Archaea   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Archaeoglobus fulgidus M64487 628 464 74% 93 78 84% 19 9 47% 32 22 69% 12 8 67% 33 21 64%
Desulfurococcus mobilis X05480 655 421 64% 106 73 69% 13 6 46% 25 0 0% 10 0 0% 65 18 28%
Haloarcula marismortui X13738 610 379 62% 101 42 42% 20 11 55% 31 10 32% 11 8 73% 43 9 21%
Haloarcula marismortui rrnA AF034619 607 358 59% 103 29 28% 20 7 35% 32 6 19% 11 8 73% 43 0 0%
Haloarcula marismortui rrnB AF034620 608 379 62% 104 43 41% 20 11 55% 32 19 59% 11 0 0% 43 0 0%
Halobacterium salinarum X03407 604 397 66% 97 77 79% 17 4 24% 32 0 0% 12 0 0% 32 5 16%
Halococcus morrhuae X05481 606 389 64% 96 56 58% 21 9 43% 31 4 13% 12 0 0% 32 0 0%
Haloferax volcanii Thesis, Achenbach-Richter L. 595 394 66% 94 46 49% 17 4 24% 31 13 42% 12 0 0% 29 3 10%
Methanococcus jannaschii U67517 L77117 656 449 68% 113 77 68% 12 5 42% 42 8 19% 13 11 85% 43 24 56%
Methanococcus vannielii X02729 623 391 63% 107 67 63% 9 5 56% 40 16 40% 14 12 86% 30 20 67%
Methanospirillum hungatei M81323 601 286 48% 96 23 24% 17 5 29% 31 0 0% 12 0 0% 28 0 0%
Methanothermobacter thermautotrophicus X05482 636 295 46% 109 33 30% 21 0 0% 34 0 0% 12 0 0% 30 10 33%
Sulfolobus acidocaldarius M67495 649 409 63% 115 67 58% 14 0 0% 38 9 24% 12 10 83% 33 10 30%
Thermococcus celer M67497 649 463 71% 105 65 62% 17 5 29% 38 9 24% 13 11 85% 38 20 53%
Thermofilum pendens X14835 663 428 65% 110 64 58% 13 0 0% 40 8 20% 12 9 75% 29 10 34%
Thermoplasma acidophilum M32298 604 397 66% 99 70 71% 17 7 41% 33 10 30% 12 0 0% 33 4 12%
Thermoproteus tenax PUBMED 661 426 64% 107 62 58% 14 0 0% 40 0 0% 12 0 0% 33 11 33%
Bacteria   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Acinetobacter calcoaceticus X87280 614 348 57% 94 14 15% 14 0 0% 49 7 14% 13 12 92% 36 10 28%
Aeromonas hydrophila X87281 610 398 65% 96 27 28% 14 6 43% 49 28 57% 13 12 92% 36 9 25%
Aquifex aeolicus AE000709 AE000751 637 412 65% 97 62 64% 19 0 0% 40 0 0% 11 0 0% 47 8 17%
Bacillus anthracis X64645 606 317 52% 99 26 26% 18 12 67% 39 14 36% 12 9 75% 34 10 29%
Bacillus sp. X60981 602 330 55% 93 29 31% 17 9 53% 40 15 38% 13 9 69% 38 18 47%
Bacillus subtilis K00637 AF008220 Z99119 617 391 63% 100 35 35% 18 7 39% 41 14 34% 13 9 69% 46 18 39%
Bartonella bacilliformis L39095 625 389 62% 73 9 12% 15 0 0% 31 11 35% 13 0 0% 45 0 0%
Bordetella bronchiseptica X70371 600 307 51% 95 21 22% 12 6 50% 47 20 43% 14 13 93% 36 2 6%
Bordetella pertussis X68323 592 247 42% 96 0 0% 12 6 50% 47 14 30% 14 0 0% 36 0 0%
Borrelia burgdorferi M88330 625 334 53% 99 25 25% 22 0 0% 38 0 0% 10 0 0% 48 8 17%
Bradyrhizobium japonicum Z35330 610 418 69% 79 38 48% 15 0 0% 32 0 0% 4 0 0% 47 8 17%
Bradyrhizobium japonicum X71840 615 421 68% 80 29 36% 15 4 27% 31 8 26% 4 0 0% 47 8 17%
Burkholderia cepacia X16368 609 381 63% 97 22 23% 12 6 50% 47 5 11% 13 12 92% 39 10 26%
Burkholderia mallei Y17183 612 374 61% 98 29 30% 12 6 50% 47 5 11% 13 12 92% 39 12 31%
Burkholderia pseudomallei Y17184 612 369 60% 98 29 30% 12 6 50% 47 5 11% 13 12 92% 39 12 31%
Campylobacter coli U09611 615 376 61% 119 47 39% 13 0 0% 34 9 26% 13 0 0% 43 16 37%
Campylobacter jejuni Z29326 612 362 59% 95 19 20% 13 0 0% 42 9 21% 13 0 0% 45 8 18%
Chlamydia suis U68420 599 265 44% 90 9 10% 12 0 0% 41 0 0% 13 0 0% 38 17 45%
Chlamydia trachomatis U68443 614 300 49% 91 22 24% 15 9 60% 40 15 38% 13 0 0% 46 8 17%
Chlamydophila pneumoniae U76711 AE001668 598 283 47% 89 17 19% 12 0 0% 41 12 29% 13 0 0% 38 8 21%
Chlamydophila psittaci U68447 623 254 41% 96 32 33% 14 0 0% 39 11 28% 13 0 0% 46 8 17%
Chlorobium limicola M62805 553 362 65% 75 37 49% 15 1 7% 38 17 45% 13 9 69% 28 8 29%
Citrobacter freundii U77928 613 298 49% 96 6 6% 14 0 0% 46 0 0% 13 0 0% 39 8 21%
Clostridium botulinum A X65602 598 360 60% 96 29 30% 17 8 47% 38 17 45% 13 9 69% 46 8 17%
Clostridium botulinum B M94178 614 390 64% 98 27 28% 17 9 53% 38 0 0% 13 9 69% 46 18 39%
Clostridium botulinum B M94259 611 374 61% 98 12 12% 17 9 53% 38 0 0% 13 0 0% 46 8 17%
Clostridium botulinum E M94261 609 389 64% 97 21 22% 17 9 53% 37 16 43% 13 9 69% 46 8 17%
Coxiella burnetii X79704 555 251 45% 73 13 18% 56 20 36% 36 12 33% 12 10 83% 41 1 2%
Deinococcus radiodurans AE002087 601 282 47% 96 17 18% 18 11 61% 36 11 31% 13 0 0% 45 14 31%
Deinococcus radiodurans AE001886 602 332 55% 96 26 27% 18 11 61% 36 7 19% 13 0 0% 45 8 18%
Enterococcus faecalis X79341 613 387 63% 99 19 19% 15 0 0% 40 9 23% 13 0 0% 44 17 39%
Erysipelothrix rhusiopathiae AB019250 602 367 61% 101 31 31% 18 0 0% 38 8 21% 13 0 0% 45 0 0%
Escherichia coli J01695 620 410 66% 97 30 31% 14 0 0% 46 11 24% 13 0 0% 40 7 18%
Flexibacter flexilis M62806 563 243 43% 88 0 0% 13 0 0% 35 0 0% 13 0 0% 29 0 0%
Frankia sp. M55343 674 381 57% 84 6 7% 23 0 0% 34 0 0% 21 9 43% 39 10 26%
Geobacillus stearothermophilus K02663 615 443 72% 94 29 31% 17 9 53% 40 21 53% 13 9 69% 38 8 21%
Haemophilus influenzae (operons A-F) U32742 U32745 U32755 U32847 U32697 U32707 612 337 55% 96 16 17% 14 0 0% 45 0 0% 13 0 0% 40 7 18%
Helicobacter pylori U27270 591 309 52% 89 10 11% 12 0 0% 42 10 24% 14 0 0% 37 8 22%
Heliobacterium chlorum NPA2 624 402 64% 95 35 37% 16 12 75% 29 15 52% 18 0 0% 37 8 22%
Klebsiella pneumoniae X87284 619 375 61% 97 42 43% 14 0 0% 46 0 0% 13 0 0% 39 6 15%
Lactobacillus delbrueckii X68426 612 388 63% 97 27 28% 15 0 0% 41 0 0% 12 8 67% 46 8 17%
Lactococcus lactis X68434 616 330 54% 98 21 21% 16 0 0% 40 0 0% 13 0 0% 45 7 16%
Leptospira interrogans X14249 616 335 54% 98 17 17% 18 0 0% 40 0 0% 11 0 0% 48 8 17%
Listeria monocytogenes X64533 611 341 56% 99 19 19% 18 0 0% 40 9 23% 13 0 0% 46 19 41%
Listeria monocytogenes X68420 623 431 69% 99 38 38% 18 7 39% 39 10 26% 13 9 69% 46 10 22%
Micrococcus luteus X06484 649 368 57% 88 22 25% 22 9 41% 36 9 25% 20 0 0% 39 7 18%
Mycobacterium leprae X56657 656 400 61% 87 23 26% 24 19 79% 37 22 59% 19 8 42% 39 6 15%
Mycobacterium tuberculosis Z73902 664 329 50% 86 23 27% 24 15 63% 38 0 0% 19 0 0% 40 8 20%
Mycoplasma genitalium U39694 621 300 48% 99 21 21% 14 0 0% 42 0 0% 12 0 0% 44 8 18%
Mycoplasma pneumoniae X68422 U00089 616 369 60% 101 19 19% 16 7 44% 40 10 25% 13 0 0% 43 8 19%
Myroides odoratus M62807 534 187 35% 77 27 35% 17 0 0% 33 0 0% 13 0 0% 27 0 0%
Neisseria gonorrhoeae X67293 610 300 49% 99 14 14% 12 6 50% 45 13 29% 13 0 0% 40 7 18%
Neisseria meningitidis X67300 611 326 53% 99 6 6% 12 6 50% 45 20 44% 13 0 0% 40 8 20%
Parachlamydia acanthamoebae Y07555 610 318 52% 88 6 7% 13 0 0% 40 0 0% 13 0 0% 38 0 0%
Pirellula marina X07408 587 385 66% 95 49 52% 16 4 25% 38 0 0% 14 0 0% 40 11 28%
Plesiomonas shigelloides X65487 575 261 45% 82 10 12% 14 0 0% 47 11 23% 11 0 0% 33 0 0%
Pseudomonas aeruginosa Y00432 614 316 51% 96 23 24% 15 6 40% 50 33 66% 13 12 92% 36 9 25%
Rhodobacter capsulatus X06485 617 340 55% 72 22 31% 14 0 0% 32 0 0% 11 0 0% 40 8 20%
Rhodobacter sphaeroides X53853 620 394 64% 72 35 49% 15 0 0% 31 11 35% 13 0 0% 37 7 19%
Rhodococcus erythropolis AF001265 668 366 55% 82 38 46% 24 13 54% 30 11 37% 25 0 0% 39 0 0%
Rhodopseudomonas palustris X71839 612 367 60% 67 25 37% 15 0 0% 31 0 0% 13 0 0% 38 0 0%
Rickettsia prowazekii AJ235270 606 363 60% 75 14 19% 15 4 27% 42 21 50% 13 0 0% 37 10 27%
Rickettsia rickettsii U11022 596 439 74% 72 23 32% 15 4 27% 32 22 69% 0 0 0% 27 0 0%
Ruminobacter amylophilus X06765 596 289 48% 95 26 27% 15 0 0% 51 0 0% 13 0 0% 35 8 23%
Simkania negevensis U68460 604 326 54% 88 0 0% 12 0 0% 41 0 0% 13 0 0% 38 18 47%
Staphylococcus aureus X68425 622 381 61% 97 25 26% 16 3 19% 42 9 21% 13 9 69% 46 18 39%
Staphylococcus carnosus X68419 624 410 66% 96 30 31% 16 9 56% 42 19 45% 13 0 0% 46 8 17%
Streptomyces ambofaciens M27245 664 421 63% 82 26 32% 25 23 92% 38 21 55% 19 9 47% 39 16 41%
Streptomyces griseus X61478 665 330 50% 85 15 18% 23 9 39% 36 0 0% 19 0 0% 39 0 0%
Synechococcus sp. PCC 6301 X00512 597 379 63% 90 39 43% 14 0 0% 39 11 28% 13 0 0% 36 19 53%
Thermotoga maritima M67498 648 448 69% 104 60 58% 21 8 38% 42 17 40% 11 0 0% 48 8 17%
Thermus aquaticus NPA 625 399 64% 93 30 32% 12 0 0% 40 9 23% 12 0 0% 38 25 66%
Thermus thermophilus X12612 607 389 64% 94 5 5% 14 7 50% 40 10 25% 12 8 67% 38 18 47%
Treponema pallidum (rRNA A) AE001204 623 261 42% 98 12 12% 18 0 0% 42 0 0% 13 0 0% 46 8 17%
Tropheryma whipplei AF190687 629 346 55% 84 26 31% 22 0 0% 35 0 0% 19 8 42% 39 17 44%
Eukaryotic Chloroplast   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Alnus incana M75719 M75722 576 313 54% 94 26 28% 17 0 0% 40 0 0% 13 0 0% 32 0 0%
Astasia longa X14386 596 156 26% 83 4 5% 19 9 47% 56 6 11% 19 0 0% 53 15 28%
Chlamydomonas eugametos Z17234 608 266 44% 96 16 17% 27 0 0% 38 0 0% 0 0 0% 52 0 0%
Chlamydomonas frankii L43352 X68905 X68906 X68907 X68908 X68909 Z17230 577 249 43% 94 31 33% 13 0 0% 41 4 10% 13 0 0% 32 2 6%
Chlamydomonas geitleri L43353 X68891 X68892 Z15153 590 285 48% 96 8 8% 13 0 0% 40 0 0% 13 10 77% 33 0 0%
Chlamydomonas gelatinosa Z15151 580 278 48% 92 26 28% 17 0 0% 40 0 0% 13 0 0% 33 8 24%
Chlamydomonas humicola L42989 X68921 X68922 Z17235 578 275 48% 93 4 4% 17 4 24% 39 0 0% 13 0 0% 33 2 6%
Chlamydomonas indica X68893 X68894 X68895 X68896 X68897 X68898 Z17228 606 265 44% 99 22 22% 27 0 0% 34 0 0% 11 0 0% 41 0 0%
Chlamydomonas iyengarii L43354 X68885 X68886 Z15148 578 312 54% 94 34 36% 17 4 24% 40 0 0% 9 0 0% 37 10 27%
Chlamydomonas komma L43502 X68927 X68928 X68929 Z17237 582 323 55% 94 42 45% 14 2 14% 40 11 28% 13 0 0% 32 0 0%
Chlamydomonas mexicana L49148 X68910 X68911 X68912 Z17231 586 308 53% 93 12 13% 18 0 0% 36 0 0% 16 0 0% 33 10 30%
Chlamydomonas pallidostigmatica L43503 X68899 X68900 X68901 X68902 X68903 X68904 Z17229 601 300 50% 109 20 18% 17 0 0% 38 0 0% 0 0 0% 51 6 12%
Chlamydomonas peterfii L43538 X68887 X68888 Z15149 581 310 53% 88 23 26% 23 10 43% 40 0 0% 11 0 0% 36 8 22%
Chlamydomonas pitschmannii Z15152 588 302 51% 83 35 42% 25 4 16% 40 0 0% 4 0 0% 42 0 0%
Chlamydomonas reinhardtii X15727 X16686 X16687 596 335 56% 100 16 16% 15 0 0% 40 0 0% 13 11 85% 41 17 41%
Chlamydomonas sp. SAG 66.72 L43539 X68923 X68924 X68925 X68926 Z17236 608 321 53% 94 27 29% 17 0 0% 38 0 0% 6 6 100% 46 8 17%
Chlamydomonas starrii L43504 X68889 X68890 Z15150 580 285 49% 90 28 31% 13 0 0% 44 0 0% 4 0 0% 46 10 22%
Chlamydomonas zebra L43356 Z17233 578 317 55% 93 10 11% 17 0 0% 40 0 0% 11 9 82% 35 0 0%
Chlorella ellipsoidea M36158 578 291 50% 74 17 23% 34 0 0% 34 0 0% 17 0 0% 35 7 20%
Conopholis americana X59768 X58863 555 179 32% 85 0 0% 24 0 0% 38 0 0% 12 0 0% 32 0 0%
Epifagus virginiana X62099 566 218 39% 89 17 19% 17 9 53% 41 13 32% 12 0 0% 32 0 0%
Euglena gracilis X12890 X13310 595 263 44% 103 11 11% 19 0 0% 37 0 0% 14 0 0% 37 6 16%
Marchantia polymorpha X04465 576 250 43% 92 32 35% 19 0 0% 41 0 0% 12 0 0% 34 6 18%
Nicotiana tabacum Z00044 583 316 54% 97 23 24% 17 9 53% 40 0 0% 13 0 0% 32 0 0%
Odontella sinensis Z67753 583 274 47% 92 8 9% 14 9 64% 39 13 33% 13 0 0% 36 0 0%
Oryza sativa X15901 599 276 46% 73 18 25% 32 0 0% 37 1 3% 20 7 35% 33 6 18%
Palmaria palmata Z18289 587 300 51% 90 19 21% 17 3 18% 37 11 30% 13 2 15% 35 10 29%
Pisum sativum X55033 M37430 579 229 40% 88 0 0% 24 0 0% 40 0 0% 13 0 0% 32 0 0%
Plasmodium falciparum (plastid-like) X61660 X95275 566 133 23% 71 2 3% 21 4 19% 41 10 24% 10 0 0% 34 8 24%
Toxoplasma gondii (plastid-like) U18086 533 242 45% 65 26 40% 22 7 32% 41 0 0% 7 0 0% 25 0 0%
Zea mays Z00028 605 281 46% 78 7 9% 31 0 0% 39 1 3% 20 7 35% 41 0 0%
Eukaryotic Mitochondrion   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Acanthamoeba castellanii U03732 544 222 41% 68 8 12% 14 4 29% 44 6 14% 12 0 0% 39 0 0%
Aedes albopictus X01078 248 53 21% 31 0 0% 12 0 0% 15 0 0% 1 0 0% 0 0 0%
Albinaria caerulea X83390 185 48 26% 39 6 15% 11 0 0% 7 0 0% 0 0 0% 0 0 0%
Albinaria turrita X71393 X71394 185 36 19% 37 0 0% 11 0 0% 6 0 0% 0 0 0% 0 0 0%
Allomyces macrogynus U41288 543 274 50% 73 16 22% 14 0 0% 29 0 0% 26 0 0% 50 13 26%
Antilocapra americana M55540 261 114 44% 44 0 0% 16 0 0% 8 0 0% 6 0 0% 0 0 0%
Apis mellifera L06178 236 31 13% 35 0 0% 11 0 0% 12 0 0% 4 0 0% 0 0 0%
Artemia salina X12965 207 49 24% 32 0 0% 2 0 0% 16 0 0% 0 0 0% 1 0 0%
Ascaris suum X54253 166 32 19% 10 0 0% 14 5 36% 4 4 100% 0 0 0% 0 0 0%
Aspergillus nidulans J01390 X06961 478 236 49% 81 58 72% 44 0 0% 23 0 0% 6 0 0% 38 15 39%
Balaenoptera musculus X72204 256 115 45% 46 11 24% 14 0 0% 8 0 0% 5 0 0% 0 0 0%
Bos taurus J01394 258 90 35% 45 4 9% 15 0 0% 8 0 0% 6 0 0% 0 0 0%
Cacozeliana lacertina AF101007 241 82 34% 35 0 0% 12 0 0% 10 0 0% 6 0 0% 1 0 0%
Caenorhabditis elegans X54252 172 59 34% 11 4 36% 14 0 0% 4 0 0% 0 0 0% 0 0 0%
Cafeteria roenbergensis UNP00173 525 284 54% 68 21 31% 16 7 44% 41 12 29% 9 0 0% 26 8 31%
Capra hircus M55541 235 123 52% 34 4 12% 16 0 0% 7 0 0% 6 0 0% 0 0 0%
Cepaea nemoralis U23045 174 58 33% 24 9 38% 11 0 0% 5 0 0% 0 0 0% 0 0 0%
Cervus unicolor M35875 232 109 47% 35 0 0% 16 0 0% 7 0 0% 6 0 0% 0 0 0%
Chlamydomonas eugametos AF008237 349 137 39% 59 12 20% 15 0 0% 16 0 0% 0 0 0% 19 11 58%
Chlamydomonas reinhardtii X54860 U03843 336 144 43% 39 12 31% 14 3 21% 30 0 0% 0 0 0% 19 8 42%
Chondrus crispus Z46224 Z47547 498 224 45% 67 20 30% 22 0 0% 38 11 29% 9 0 0% 27 18 67%
Crithidia fasciculata X02548 108 2 2% 24 0 0% 12 0 0% 0 0 0% 0 0 0% 0 0 0%
Crithidia oncopelti X51736 103 0 0% 19 4 21% 11 0 0% 0 0 0% 0 0 0% 0 0 0%
Crossostoma lacustre M91245 253 119 47% 41 13 32% 24 6 25% 0 0 0% 14 0 0% 0 0 0%
Damaliscus pygargus M86499 261 125 48% 45 0 0% 16 0 0% 8 0 0% 6 0 0% 0 0 0%
Dictyostelium discoideum D16466 494 162 33% 87 20 23% 17 0 0% 31 0 0% 19 0 0% 25 0 0%
Didelphis virginiana Z29573 263 110 42% 44 0 0% 16 0 0% 8 0 0% 6 0 0% 0 0 0%
Drosophila melanogaster X53506 244 64 26% 29 0 0% 13 0 0% 16 0 0% 0 0 0% 1 0 0%
Drosophila yakuba X03240 227 60 26% 30 0 0% 12 0 0% 13 0 0% 0 0 0% 0 0 0%
Equus caballus X79547 266 123 46% 42 4 10% 18 0 0% 7 0 0% 6 0 0% 0 0 0%
Euhadra herklotsi Z71693 177 54 31% 30 8 27% 12 0 0% 5 0 0% 0 0 0% 0 0 0%
Gallus gallus X52392 250 62 25% 33 12 36% 24 7 29% 3 0 0% 11 0 0% 0 0 0%
Homo sapiens D38112 251 89 35% 41 10 24% 16 0 0% 7 0 0% 6 0 0% 0 0 0%
Hydropotes inermis M35876 233 110 47% 36 4 11% 15 0 0% 7 0 0% 6 0 0% 0 0 0%
Katharina tunicata U09810 220 49 22% 29 0 0% 15 0 0% 16 0 0% 0 0 0% 1 0 0%
Leishmania tarentolae X02354 110 13 12% 21 0 0% 11 0 0% 0 0 0% 0 0 0% 0 0 0%
Leptomonas sp. J03814 103 0 0% 20 0 0% 11 5 45% 0 0 0% 0 0 0% 0 0 0%
Locusta migratoria X80245 226 78 35% 34 0 0% 10 0 0% 16 8 50% 0 0 0% 0 0 0%
Loligo bleekeri AB009838 236 49 21% 29 0 0% 8 0 0% 16 0 0% 0 0 0% 0 0 0%
Lumbricus terrestris U24570 204 70 34% 37 9 24% 0 0 0% 13 0 0% 0 0 0% 0 0 0%
Marchantia polymorpha M68929 547 273 50% 65 23 35% 20 0 0% 32 0 0% 13 0 0% 28 0 0%
Meloidogyne javanica L76261 120 6 5% 5 0 0% 14 0 0% 0 0 0% 0 0 0% 0 0 0%
Muntiacus reevesi M35877 282 95 34% 54 8 15% 16 0 0% 10 0 0% 6 0 0% 1 0 0%
Mus musculus J01420 264 93 35% 39 0 0% 18 0 0% 7 0 0% 7 0 0% 0 0 0%
Mytilus edulis M83756 227 53 23% 32 0 0% 12 0 0% 16 0 0% 0 0 0% 1 0 0%
Neurospora crassa X55443 450 231 51% 96 23 24% 44 13 30% 17 0 0% 27 0 0% 44 11 25%
Ochromonas danica AF287134 531 243 46% 67 8 12% 12 8 67% 46 23 50% 10 10 100% 26 0 0%
Odocoileus virginianus M35874 239 91 38% 36 0 0% 15 0 0% 7 0 0% 6 0 0% 0 0 0%
Oenothera berteriana X02559 508 201 40% 57 23 40% 9 9 100% 43 11 26% 4 0 0% 47 0 0%
Pan troglodytes D38113 247 93 38% 41 4 10% 15 0 0% 8 0 0% 6 0 0% 0 0 0%
Paracentrotus lividus J04815 256 84 33% 30 9 30% 26 0 0% 0 0 0% 14 0 0% 0 0 0%
Paracrostoma paludiformis AF101008 239 79 33% 31 0 0% 10 0 0% 9 0 0% 6 0 0% 1 0 0%
Paramecium primaurelia K00634 435 117 27% 76 17 22% 22 0 0% 35 0 0% 11 8 73% 19 0 0%
Paramecium tetraurelia K01749 477 148 31% 74 42 57% 20 0 0% 38 13 34% 8 8 100% 19 0 0%
Pecten maximus X92688 237 67 28% 25 0 0% 16 0 0% 5 0 0% 10 0 0% 1 0 0%
Penicillium chrysogenum D13859 S56867 459 182 40% 94 29 31% 30 0 0% 30 0 0% 14 4 29% 43 0 0%
Phoca vitulina X63726 257 100 39% 41 0 0% 16 0 0% 8 0 0% 6 0 0% 0 0 0%
Physarum polycephalum AF080601 480 164 34% 67 9 13% 14 4 29% 28 0 0% 26 0 0% 31 0 0%
Pichia canadensis D31785 477 241 51% 62 13 21% 77 0 0% 5 0 0% 6 0 0% 45 27 60%
Podospora anserina X14735 X55026 478 250 52% 62 2 3% 62 0 0% 28 0 0% 14 11 79% 40 0 0%
Porphyra purpurea AF114794 500 180 36% 66 23 35% 29 8 28% 42 12 29% 0 0 0% 26 0 0%
Prototheca wickerhamii X68722 551 354 64% 72 27 38% 17 11 65% 29 24 83% 6 0 0% 41 21 51%
Pylaiella littoralis Z48620 509 172 34% 71 8 11% 15 0 0% 42 0 0% 13 0 0% 18 0 0%
Pyura stolonifera X74513 160 35 22% 33 0 0% 5 0 0% 8 0 0% 0 0 0% 0 0 0%
Rana catesbeiana X12841 232 112 48% 34 4 12% 14 0 0% 6 0 0% 7 0 0% 0 0 0%
Rattus norvegicus JO1438 219 48 22% 26 0 0% 17 0 0% 6 0 0% 6 0 0% 0 0 0%
Reclinomonas americana AF007261 578 270 47% 66 10 15% 15 0 0% 42 7 17% 14 11 79% 27 8 30%
Rhizopus stolonifer NPA 491 247 50% 91 36 40% 17 3 18% 40 8 20% 19 0 0% 18 0 0%
Rhodomonas salina AF288090 530 232 44% 70 6 9% 19 0 0% 41 9 22% 10 0 0% 27 0 0%
Saccharomyces cerevisiae J01527 461 113 25% 65 3 5% 59 0 0% 23 0 0% 0 0 0% 51 15 29%
Sceloporus undulatus L28075 246 90 37% 37 3 8% 11 0 0% 8 0 0% 5 0 0% 0 0 0%
Schizosaccharomyces pombe X06597 502 220 44% 83 22 27% 16 0 0% 25 13 52% 27 16 59% 27 16 59%
Strongylocentrotus purpuratus X12631 200 68 34% 15 0 0% 18 0 0% 1 0 0% 12 0 0% 0 0 0%
Suillus sinuspaulianus L47585 481 171 36% 66 11 17% 27 0 0% 32 0 0% 5 0 0% 78 0 0%
Tetrahymena pyriformis M58010 493 221 45% 75 38 51% 29 19 66% 40 20 50% 3 3 100% 27 14 52%
Tetrahymena pyriformis M58011 487 211 43% 73 34 47% 28 15 54% 39 19 49% 3 3 100% 27 14 52%
Tragulus napu M55539 240 118 49% 34 0 0% 16 10 63% 7 0 0% 6 0 0% 0 0 0%
Triticum aestivum Z11889 Z14078 509 188 37% 57 13 23% 9 0 0% 34 0 0% 0 0 0% 59 0 0%
Trypanosoma brucei X02547 106 8 8% 19 0 0% 12 0 0% 0 0 0% 0 0 0% 0 0 0%
Xenopus laevis M10217 270 119 44% 35 4 11% 23 0 0% 0 0 0% 13 0 0% 0 0 0%
Zea mays K01868 510 170 33% 58 17 29% 9 0 0% 32 11 34% 0 0 0% 68 0 0%
Eukaryotic Nuclear   2-100 101-200 201-300 301-400 401-500 501+
C1 P A C P A C P A C P A C P A C P A
Aedes albopictus L22060 650 345 53% 137 69 50% 32 10 31% 15 0 0% 42 11 26% 48 6 13%
Arabidopsis thaliana X52320 686 341 50% 134 55 41% 30 22 73% 17 0 0% 33 11 33% 30 0 0%
Babesia bigemina NPA 587 208 35% 122 28 23% 15 4 27% 21 0 0% 32 0 0% 28 0 0%
Brassica napus D10840 689 328 48% 134 37 28% 28 11 39% 15 0 0% 31 0 0% 30 0 0%
Caenorhabditis elegans X03680 725 430 59% 137 70 51% 32 14 44% 10 0 0% 40 0 0% 28 0 0%
Candida albicans L28817 710 322 45% 146 37 25% 20 9 45% 20 0 0% 32 11 34% 29 0 0%
Chlorella ellipsoidea D17810 D13340 700 328 47% 145 47 32% 21 4 19% 15 0 0% 35 0 0% 29 0 0%
Crithidia fasciculata Y00055 623 334 54% 98 26 27% 42 22 52% 15 6 40% 15 0 0% 66 0 0%
Dictyostelium discoideum X00601 V00189 588 350 60% 111 50 45% 30 18 60% 15 12 80% 45 11 24% 19 12 63%
Didymium iridis X60210 709 319 45% 111 32 29% 36 12 33% 16 0 0% 38 8 21% 40 0 0%
Drosophila melanogaster M21017 X15707 682 349 51% 132 57 43% 40 26 65% 28 12 43% 24 9 38% 53 19 36%
Encephalitozoon cuniculi AJ005581 477 196 41% 57 18 32% 24 8 33% 26 0 0% 14 0 0% 11 6 55%
Entamoeba histolytica X65163 651 354 54% 98 37 38% 30 26 87% 17 0 0% 30 4 13% 36 0 0%
Euglena gracilis X53361 696 175 25% 139 12 9% 45 14 31% 2 0 0% 25 0 0% 53 0 0%
Filobasidiella neoformans var. bacillispora L14067 726 453 62% 139 67 48% 27 16 59% 17 0 0% 34 0 0% 29 0 0%
Fragaria x ananassa X15589 X58118 675 264 39% 133 22 17% 26 0 0% 17 0 0% 31 11 35% 29 0 0%
Giardia ardeae X58290 584 232 40% 83 34 41% 11 1 9% 42 11 26% 13 0 0% 17 0 0%
Giardia intestinalis X52949 590 203 34% 92 42 46% 12 4 33% 41 8 20% 13 0 0% 26 0 0%
Giardia muris X65063 571 236 41% 82 32 39% 14 0 0% 40 0 0% 14 0 0% 18 0 0%
Herdmania momus X53538 683 210 31% 102 36 35% 21 0 0% 27 8 30% 29 0 0% 30 0 0%
Hexamita inflata NPA 526 272 52% 114 54 47% 7 7 100% 24 4 17% 25 10 40% 27 0 0%
Homo sapiens J01866 M11167 648 228 35% 118 31 26% 64 20 31% 4 0 0% 27 0 0% 93 0 0%
Lycopersicon esculentum X13557 X52265 701 328 47% 135 52 39% 29 4 14% 13 0 0% 37 0 0% 29 0 0%
Microsporidium 57864 U90885 464 173 37% 76 31 41% 25 9 36% 37 0 0% 4 0 0% 11 0 0%
Mucor racemosus M26190 666 331 50% 130 37 28% 31 17 55% 21 6 29% 27 0 0% 16 0 0%
Mus musculus J01871 X00525 656 307 47% 126 44 35% 55 32 58% 14 0 0% 26 9 35% 85 27 32%
Naegleria gruberi Thesis, Mullican J. 661 364 55% 114 53 46% 33 22 67% 5 0 0% 48 11 23% 30 10 33%
Nosema apis U76706 461 216 47% 74 30 41% 26 7 27% 36 0 0% 5 0 0% 9 0 0%
Nosema apis U97150 467 186 40% 73 12 16% 26 7 27% 35 0 0% 5 0 0% 9 0 0%
Oryza sativa M11585 M16845 M35384 M82048 M19228 700 377 54% 138 49 36% 22 14 64% 17 0 0% 35 9 26% 29 0 0%
Physarum polycephalum V01159 V01160 700 240 34% 113 19 17% 39 0 0% 16 0 0% 38 0 0% 41 0 0%
Phytophthora megasperma X75631 X75632 718 465 65% 135 94 70% 17 9 53% 15 3 20% 47 22 47% 30 10 33%
Plasmodium falciparum (A gene) U21939 738 412 56% 128 60 47% 37 22 59% 11 0 0% 51 0 0% 33 0 0%
Plasmodium falciparum (S gene) U48228 770 342 44% 145 60 41% 31 6 19% 20 12 60% 40 10 25% 64 9 14%
Plasmodium vivax (A gene) NPA 745 392 53% 134 47 35% 38 17 45% 10 0 0% 46 0 0% 37 0 0%
Plasmodium vivax (O gene) NPA 678 318 47% 108 47 44% 25 6 24% 24 9 38% 18 0 0% 65 9 14%
Plasmodium vivax (S gene) NPA 569 232 41% 85 38 45% 52 27 52% 11 0 0% 12 0 0% 101 14 14%
Pneumocystis carinii M86760 719 387 54% 145 85 59% 19 15 79% 19 0 0% 34 0 0% 30 10 33%
Prorocentrum micans M14649 M19230 X15973 638 304 48% 121 42 35% 31 17 55% 14 0 0% 38 8 21% 28 0 0%
Rattus norvegicus J01881 V01270 J01438 488 188 39% 109 62 57% 31 4 13% 4 0 0% 27 0 0% 57 0 0%
Saccharomyces cerevisiae U53879 739 405 55% 152 60 39% 21 10 48% 19 0 0% 35 11 31% 39 0 0%
Schizosaccharomyces japonicus Z32848 717 349 49% 145 54 37% 25 14 56% 17 0 0% 35 0 0% 29 0 0%
Schizosaccharomyces pombe J01359 Z19136 X51920 737 337 46% 142 46 32% 33 17 52% 11 0 0% 38 0 0% 32 10 31%
Sinapis alba X15915 X57137 699 338 48% 135 16 12% 30 18 60% 15 0 0% 32 0 0% 29 0 0%
Tetrahymena thermophila X54512 705 382 54% 126 80 63% 25 10 40% 23 0 0% 32 11 34% 28 0 0%
Theileria parva L28036 L28998 L26332 L26331 613 329 54% 117 47 40% 32 4 13% 20 0 0% 30 18 60% 29 0 0%
Toxoplasma gondii (P) X75453 664 377 57% 125 62 50% 34 4 12% 15 0 0% 38 0 0% 29 0 0%
Trepomonas agilis AF015455 459 182 40% 93 58 62% 11 8 73% 19 0 0% 22 0 0% 17 0 0%
Trypanosoma brucei X05682 X14553 X04986 617 229 37% 92 14 15% 48 0 0% 15 3 20% 14 0 0% 67 0 0%
Vairimorpha necatrix NPA 482 216 45% 77 29 38% 26 2 8% 33 16 48% 6 1 17% 11 0 0%
Xenopus laevis X59734 679 276 41% 124 63 51% 31 15 48% 33 0 0% 36 0 0% 55 0 0%
Zea mays NPA 483 177 37% 106 64 60% 17 4 24% 14 0 0% 36 20 56% 29 10 34%
  1. C, Number of comparative, canonical base-pairs (G-C,C-G,A-U,U-A,G-U,U-G); P, Number of base-pairs predicted in the MFold 3.1 optimal structure prediction that match comparative, canonical base-pairs; A, Accuracy of base-pair predictions in the MFold 3.1 optimal structure prediction, accuracy is calculated by dividing the number of correctly predicted Mfold base pairs by the number of canoncial, comparative base pairs within the RNA Contact Distance category.
  2. NPA, Not Publically Available - The sequence used for analysis has not been deposited in Genbank.