Archaea   TL1 ESTL GVAA GHGA UWCG
C M P A C M P A C M P A C M P A C M P A
Aeropyrum pernix AP000062 11 13 10 91% 8 9 7 88% 5 6 5 100% 2 2 1 50% 1 1 1 100%
Archaeoglobus fulgidus X05567 AE000965 11 9 6 55% 10 6 6 60% 5 4 4 80% 2 0 0 0% 3 2 2 67%
Haloarcula marismortui rrnA X61688 12 9 8 67% 8 7 7 88% 4 4 4 100% 3 2 2 67% 1 1 1 100%
Haloarcula marismortui rrnB X61689 12 11 9 75% 8 7 7 88% 5 4 4 80% 2 2 2 100% 1 1 1 100%
Halobacterium sp. AE005128 12 14 11 92% 9 9 9 100% 5 5 5 100% 3 3 3 100% 1 1 1 100%
Haloferax volcanii K00421 13 15 13 100% 10 10 10 100% 6 6 6 100% 2 2 2 100% 2 2 2 100%
Methanobacterium formicicum M36508 13 12 12 92% 10 10 10 100% 5 5 5 100% 2 2 2 100% 3 3 3 100%
Methanococcus jannaschii U67517 L77117 13 10 10 77% 10 8 8 80% 6 5 5 83% 2 2 2 100% 2 1 1 50%
Methanococcus vannielii M36507 12 11 9 75% 9 6 6 67% 5 4 4 80% 2 2 2 100% 2 0 0 0%
Methanospirillum hungatei M60880 12 11 7 58% 8 7 6 75% 4 4 3 75% 2 1 1 50% 2 2 2 100%
Methanothermobacter thermautotrophicus AE000930 12 13 11 92% 9 8 8 89% 5 5 5 100% 2 2 2 100% 2 1 1 50%
Natronobacterium innermongoliae AF009601 11 12 11 100% 8 8 8 100% 5 5 5 100% 2 2 2 100% 1 1 1 100%
Natronorubrum bangense Y14028 11 12 11 100% 8 8 8 100% 5 5 5 100% 2 2 2 100% 1 1 1 100%
Pyrococcus abyssi AJ248283 13 15 11 85% 9 9 8 89% 5 6 5 100% 2 1 1 50% 2 2 2 100%
Pyrococcus furiosus U20163 13 13 11 85% 9 9 8 89% 5 6 5 100% 2 2 2 100% 2 1 1 50%
Pyrococcus horikoshii AP000001 13 14 11 85% 9 9 8 89% 5 6 5 100% 2 1 1 50% 2 2 2 100%
Pyrodictium occultum M21087 10 13 9 90% 8 9 7 88% 5 6 5 100% 2 2 1 50% 1 1 1 100%
Sulfolobus acidocaldarius D14876 12 13 9 75% 10 8 7 70% 8 7 7 88% 1 1 0 0% 1 0 0 0%
Sulfolobus P2 NPA2 13 14 10 77% 9 6 6 67% 6 6 6 100% 2 0 0 0% 1 0 0 0%
Sulfolobus solfataricus X03235 12 13 9 75% 10 8 7 70% 8 7 7 88% 1 1 0 0% 1 0 0 0%
Thermococcus celer M21529 10 11 7 70% 9 9 7 78% 5 6 5 100% 2 2 1 50% 2 1 1 50%
Thermoplasma acidophilum AL445067 M38637 12 13 11 92% 8 7 7 88% 7 6 6 86% 0 0 0 0% 1 1 1 100%
Thermoproteus tenax M35966 13 14 11 85% 11 11 9 82% 7 9 7 100% 2 1 1 50% 2 1 1 50%
Bacteria   TL1 ESTL GVAA GHGA UWCG
C M P A C M P A C M P A C M P A C M P A
Acidobacterium capsulatum D26171 16 17 13 81% 12 11 10 83% 7 6 5 71% 3 3 3 100% 2 2 2 100%
Acinetobacter calcoaceticus M34139 16 13 9 56% 10 7 7 70% 3 2 2 67% 4 3 3 75% 3 2 2 67%
Actinomyces israelii X82450 13 12 6 46% 8 6 5 63% 3 2 2 67% 4 4 3 75% 1 0 0 0%
Aeromonas hydrophila X60407 15 16 12 80% 12 11 10 83% 3 3 3 100% 4 3 3 75% 5 5 4 80%
Agrobacterium tumefaciens M11223 16 17 12 75% 12 11 11 92% 6 6 6 100% 4 3 3 75% 2 2 2 100%
Allochromatium vinosum M26629 16 17 11 69% 13 12 11 85% 3 4 3 100% 4 2 2 50% 6 6 6 100%
Anabaena sp. X59559 17 16 12 71% 12 10 10 83% 7 6 6 86% 3 2 2 67% 2 2 2 100%
Aquifex aeolicus AE000709 AE000751 14 15 11 79% 9 8 8 89% 5 5 5 100% 2 1 1 50% 2 2 2 100%
Aquifex pyrophilus M83548 11 13 7 64% 9 8 7 78% 6 5 5 83% 2 2 1 50% 1 1 1 100%
Arthrobacter globiformis M23411 15 22 14 93% 11 13 10 91% 6 8 6 100% 3 3 2 67% 2 2 2 100%
Azorhizobium caulinodans D11342 17 18 14 82% 13 13 12 92% 7 8 7 100% 4 3 3 75% 2 2 2 100%
Bacillus anthracis X55059 19 19 14 74% 10 11 9 90% 3 4 3 100% 4 4 3 75% 3 3 3 100%
Bacillus cereus X55060 17 18 11 65% 11 13 9 82% 3 3 2 67% 4 7 4 100% 4 3 3 75%
Bacillus halodurans AB013373 15 19 12 80% 12 15 11 92% 4 6 4 100% 4 5 4 100% 4 4 3 75%
Bacillus subtilis K00637 15 22 13 87% 12 13 11 92% 4 5 4 100% 4 5 4 100% 4 3 3 75%
Bacteroides fragilis M61006 16 20 15 94% 10 11 9 90% 6 7 6 100% 3 2 2 67% 1 2 1 100%
Bartonella bacilliformis Z11683 14 16 9 64% 8 8 7 88% 4 4 4 100% 3 3 2 67% 1 1 1 100%
Bartonella henselae M73229 15 17 11 73% 9 9 8 89% 4 4 4 100% 4 4 3 75% 1 1 1 100%
Bartonella quintana M11927 14 19 11 79% 10 10 9 90% 5 5 5 100% 4 4 3 75% 1 1 1 100%
Beggiatoa sp. 1401-13 L40997 16 11 8 50% 12 8 8 67% 4 4 4 100% 4 1 1 25% 4 3 3 75%
Bordetella bronchiseptica U04948 18 20 16 89% 17 15 15 88% 7 6 6 86% 4 3 3 75% 6 6 6 100%
Bordetella parapertussis U04949 18 21 15 83% 16 14 14 88% 6 5 5 83% 4 3 3 75% 6 6 6 100%
Bordetella pertussis U04950 18 19 14 78% 16 14 13 81% 6 6 5 83% 4 3 3 75% 6 5 5 83%
Borrelia burgdorferi M88329 16 14 13 81% 12 9 9 75% 7 6 6 86% 4 2 2 50% 1 1 1 100%
Borrelia hermsii U42292 17 17 14 82% 14 11 11 79% 9 8 8 89% 4 2 2 50% 1 1 1 100%
Brachyspira hyodysenteriae U23035 17 18 14 82% 14 11 11 79% 8 7 7 88% 4 3 3 75% 2 1 1 50%
Bradyrhizobium japonicum Z35330 17 20 14 82% 12 14 12 100% 6 7 6 100% 4 5 4 100% 2 2 2 100%
Brevinema andersonii L31543 18 15 13 72% 13 10 10 77% 5 4 4 80% 5 4 4 80% 3 2 2 67%
Brucella melitensis L26166 16 16 12 75% 11 11 10 91% 5 5 5 100% 4 4 3 75% 2 2 2 100%
Buchnera sp. APS AP000398 15 16 11 73% 11 10 9 82% 7 6 6 86% 2 2 1 50% 2 2 2 100%
Burkholderia mallei S55008 16 17 11 69% 11 11 10 91% 5 5 5 100% 2 3 2 100% 4 3 3 75%
Burkholderia sp. U37342 19 17 14 74% 12 10 10 83% 6 5 5 83% 4 3 3 75% 2 2 2 100%
Campylobacter jejuni Z29326 15 18 14 93% 9 9 8 89% 3 4 3 100% 4 3 3 75% 2 2 2 100%
Campylobacter sputorum X67775 15 19 10 67% 9 7 6 67% 3 4 3 100% 4 1 1 25% 2 2 2 100%
Chlamydia muridarum AE002280 16 18 14 88% 13 13 12 92% 7 7 6 86% 3 3 3 100% 3 3 3 100%
Chlamydia trachomatis U68443 16 17 13 81% 12 12 11 92% 7 7 6 86% 3 3 3 100% 2 2 2 100%
Chlamydophila pneumoniae L06108 16 19 14 88% 12 13 11 92% 6 7 6 100% 3 3 2 67% 3 3 3 100%
Chlamydophila psittaci U68447 16 16 13 81% 13 12 11 85% 7 8 7 100% 3 2 2 67% 3 2 2 67%
Chlorobium vibrioforme M62791 18 19 12 67% 14 11 10 71% 7 5 5 71% 3 2 2 67% 4 4 3 75%
Chlorogloeopsis sp. PCC 7518 X68780 17 17 13 76% 12 11 11 92% 7 7 7 100% 4 3 3 75% 1 1 1 100%
Chromohalobacter marismortui X87222 16 11 9 56% 13 8 8 62% 3 2 2 67% 4 2 2 50% 6 4 4 67%
Citrobacter freundii M59291 16 14 8 50% 13 8 7 54% 4 4 4 100% 4 2 1 25% 5 2 2 40%
Clostridium botulinum F L37593 17 17 14 82% 11 11 11 100% 3 3 3 100% 4 4 4 100% 4 4 4 100%
Clostridium difficile X73450 16 14 13 81% 9 9 9 100% 3 3 3 100% 2 2 2 100% 4 4 4 100%
Clostridium innocuum M23732 16 17 14 88% 12 11 10 83% 6 6 5 83% 4 3 3 75% 2 2 2 100%
Clostridium perfringens M69264 16 19 14 88% 12 11 11 92% 5 5 5 100% 3 3 3 100% 4 3 3 75%
Clostridium tetani X74770 16 14 12 75% 10 8 8 80% 3 3 3 100% 3 3 3 100% 4 2 2 50%
Comamonas testosteroni M11224 18 17 14 78% 13 11 11 85% 5 5 5 100% 4 4 4 100% 4 2 2 50%
Corynebacterium diphtheriae X84248 14 15 12 86% 10 10 9 90% 4 5 4 100% 4 3 3 75% 2 2 2 100%
Coxiella burnetii M21291 18 16 14 78% 12 10 9 75% 3 4 3 100% 4 2 2 50% 5 4 4 80%
Cristispira CP1 U42638 17 16 12 71% 9 8 7 78% 4 4 3 75% 4 4 4 100% 1 0 0 0%
Deferribacter thermophilus U75602 14 13 10 71% 11 9 8 73% 4 3 3 75% 4 3 2 50% 3 3 3 100%
Deinococcus radiodurans M21413 19 20 14 74% 14 12 11 79% 5 6 5 100% 4 2 2 50% 5 4 4 80%
Desulfovibrio desulfuricans M34113 17 15 12 71% 13 11 10 77% 6 6 5 83% 3 2 2 67% 4 3 3 75%
Dichelobacter nodosus M35016 17 18 14 82% 13 11 11 85% 6 6 6 100% 4 3 3 75% 3 2 2 67%
Edwardsiella tarda AF015259 16 17 13 81% 14 13 12 86% 5 5 5 100% 4 3 2 50% 5 5 5 100%
Enterococcus faecalis Y18293 15 16 13 87% 11 10 10 91% 3 3 3 100% 4 4 4 100% 4 3 3 75%
Enterococcus faecium AF070223 15 17 14 93% 11 10 10 91% 3 3 3 100% 4 4 4 100% 4 3 3 75%
environ.Eubacteria clone W15 NPA 16 15 12 75% 11 9 9 82% 7 7 7 100% 2 1 1 50% 2 1 1 50%
Epulopiscium sp. M99572 17 17 13 76% 13 11 11 85% 5 4 4 80% 3 3 3 100% 5 4 4 80%
Erysipelothrix rhusiopathiae M23728 16 17 13 81% 10 10 9 90% 4 4 4 100% 4 4 3 75% 2 2 2 100%
Escherichia coli J01695 16 18 12 75% 14 11 10 71% 5 5 5 100% 4 3 2 50% 5 3 3 60%
Eubacterium brachy Z36272 17 14 11 65% 8 7 7 88% 4 4 4 100% 2 2 2 100% 2 1 1 50%
Francisella tularensis Z21931 13 11 6 46% 9 5 5 56% 3 3 3 100% 4 1 1 25% 2 1 1 50%
Frankia sp. M55343 16 19 13 81% 12 12 11 92% 4 5 4 100% 5 4 4 80% 3 3 3 100%
Fusobacterium necrophorum X74408 13 15 8 62% 10 8 7 70% 3 3 2 67% 4 3 3 75% 3 2 2 67%
Fusobacterium nucleatum subsp. nucleatum M58683 15 13 11 73% 9 8 8 89% 2 2 2 100% 4 3 3 75% 3 3 3 100%
Gemmata obscuriglobus X56305 17 19 16 94% 15 15 15 100% 8 8 8 100% 5 5 5 100% 2 2 2 100%
Geotoga subterranea L10659 16 17 15 94% 11 10 10 91% 5 5 5 100% 4 4 4 100% 2 1 1 50%
Gluconacetobacter liquefaciens X75617 16 14 11 69% 14 11 10 71% 6 6 6 100% 5 4 3 60% 3 1 1 33%
Haemobartonella felis U95297 15 10 9 60% 8 8 8 100% 4 4 4 100% 1 1 1 100% 3 3 3 100%
Haemophilus influenzae X87977 18 11 10 56% 12 8 7 58% 4 4 4 100% 5 3 2 40% 3 1 1 33%
Haemophilus influenzae (operons A-F) U32741 U32744 U32755 U32847 U32697 U32708 18 14 12 67% 13 9 8 62% 5 5 5 100% 5 3 2 40% 3 1 1 33%
Halomonas halodenitrificans L04942 16 14 11 69% 14 11 10 71% 4 5 4 100% 4 2 2 50% 6 4 4 67%
Helicobacter pylori M88157 16 16 11 69% 9 7 7 78% 4 4 4 100% 3 2 2 67% 2 1 1 50%
Heliobacterium chlorum M11212 15 14 9 60% 13 9 8 62% 5 5 4 80% 4 3 3 75% 4 1 1 25%
Holophaga foetida X77215 17 17 13 76% 12 11 11 92% 6 6 6 100% 4 3 3 75% 2 2 2 100%
Isosphaera pallida X64372 15 14 11 73% 10 9 8 80% 7 8 7 100% 2 1 1 50% 1 0 0 0%
Klebsiella pneumoniae X80684 15 14 10 67% 12 10 9 75% 4 5 4 100% 4 2 2 50% 4 3 3 75%
Lactobacillus acidophilus M58802 16 19 13 81% 12 11 10 83% 3 3 3 100% 4 4 3 75% 5 4 4 80%
Lactococcus lactis subsp. lactis AE006456 16 20 15 94% 13 12 12 92% 6 6 6 100% 4 4 4 100% 3 2 2 67%
Legionella pneumophila M59157 18 15 12 67% 11 9 9 82% 3 3 3 100% 4 2 2 50% 4 4 4 100%
Leptonema illini M88719 17 17 12 71% 13 10 10 77% 7 6 6 86% 5 3 3 60% 1 1 1 100%
Leptospira interrogans X17547 18 20 17 94% 14 14 14 100% 7 7 7 100% 4 4 4 100% 3 3 3 100%
Leptospirillum ferriphilum AF356830 14 12 8 57% 11 9 8 73% 6 7 6 100% 3 1 1 33% 2 1 1 50%
Listeria monocytogenes M58822 16 19 14 88% 12 11 11 92% 4 4 4 100% 4 4 4 100% 4 3 3 75%
Mesorhizobium loti AP003001 16 19 13 81% 11 11 10 91% 6 6 6 100% 4 4 3 75% 1 1 1 100%
Methylobacterium sp. Z23160 17 13 9 53% 9 8 7 78% 3 4 3 100% 4 2 2 50% 2 2 2 100%
Methylococcus capsulatus X72771 17 11 9 53% 12 9 9 75% 4 4 4 100% 4 2 2 50% 4 3 3 75%
Micrococcus luteus M38242 17 17 13 76% 11 9 9 82% 5 4 4 80% 4 3 3 75% 2 2 2 100%
Microcystis aeruginosa U03402 Z28699 15 14 11 73% 13 11 11 85% 6 6 6 100% 4 3 3 75% 3 2 2 67%
Mycobacterium avium X52918 16 18 9 56% 9 6 5 56% 3 2 2 67% 3 2 2 67% 3 2 1 33%
Mycobacterium leprae X56657 15 19 10 67% 10 10 9 90% 5 5 5 100% 3 3 2 67% 2 2 2 100%
Mycobacterium tuberculosis X52917 15 20 10 67% 10 9 8 80% 3 3 3 100% 4 4 3 75% 3 2 2 67%
Mycoplasma capricolum X00921 18 16 11 61% 12 8 8 67% 6 4 4 67% 4 2 2 50% 2 2 2 100%
Mycoplasma gallisepticum M22441 16 19 11 69% 9 8 7 78% 6 5 5 83% 2 1 1 50% 1 2 1 100%
Mycoplasma genitalium U39694 14 17 13 93% 9 8 8 89% 6 6 6 100% 2 1 1 50% 1 1 1 100%
Mycoplasma hyopneumoniae Y00149 17 18 13 76% 12 9 9 75% 5 4 4 80% 3 2 2 67% 4 3 3 75%
Mycoplasma mycoides M23943 17 15 9 53% 10 6 6 60% 4 4 4 100% 4 1 1 25% 2 1 1 50%
Mycoplasma pneumoniae M29061 15 16 12 80% 9 8 8 89% 6 6 6 100% 2 1 1 50% 1 1 1 100%
Myxococcus xanthus M34114 17 17 12 71% 13 11 10 77% 7 7 6 86% 4 2 2 50% 2 2 2 100%
Neisseria gonorrhoeae X07714 18 22 16 89% 13 13 12 92% 5 5 5 100% 4 5 4 100% 4 3 3 75%
Neisseria meningitidis AE002364 18 19 15 83% 12 12 11 92% 4 4 4 100% 4 4 3 75% 4 4 4 100%
Nocardia asteroides X80606 13 14 7 54% 8 9 5 63% 2 3 2 100% 4 4 2 50% 2 2 1 50%
Oscillatoria agardhii X84811 16 19 13 81% 12 11 11 92% 7 7 7 100% 3 2 2 67% 2 2 2 100%
Pasteurella multocida M35018 16 14 12 75% 11 9 9 82% 3 3 3 100% 4 2 2 50% 4 4 4 100%
Petrotoga miotherma L10657 16 17 12 75% 10 10 10 100% 4 4 4 100% 3 3 3 100% 3 3 3 100%
Pirellula marina X62912 13 12 9 69% 11 11 9 82% 5 7 5 100% 2 1 1 50% 4 3 3 75%
Pirellula staleyi M34126 17 17 13 76% 13 13 11 85% 8 10 8 100% 3 2 2 67% 2 1 1 50%
Planctomycetaceae Schlesner 670 X81948 16 17 14 88% 14 12 12 86% 8 7 7 88% 3 2 2 67% 3 3 3 100%
Plesiomonas shigelloides X74688 16 15 10 63% 13 8 8 62% 3 3 3 100% 4 2 2 50% 6 3 3 50%
Pleurocapsa sp. X78681 16 13 10 63% 9 7 7 78% 4 3 3 75% 4 3 3 75% 1 1 1 100%
Porphyromonas gingivalis L16492 17 15 12 71% 10 10 9 90% 4 4 4 100% 4 3 3 75% 2 3 2 100%
Proteus vulgaris X07652 16 16 13 81% 13 11 11 85% 4 4 4 100% 4 2 2 50% 5 5 5 100%
Pseudomonas aeruginosa M34133 16 14 12 75% 11 12 11 100% 4 4 4 100% 4 5 4 100% 3 3 3 100%
Pseudomonas putida D84020 16 17 15 94% 15 14 14 93% 5 5 5 100% 4 3 3 75% 6 6 6 100%
Pseudomonas sp. U37339 16 13 11 69% 13 10 10 77% 4 4 4 100% 4 3 3 75% 5 3 3 60%
Psychrobacter pacificensis AB016054 13 16 11 85% 9 10 8 89% 2 3 2 100% 4 4 3 75% 3 3 3 100%
Rhodobium orientis D30792 16 15 12 75% 9 9 8 89% 4 4 4 100% 3 3 2 67% 2 2 2 100%
Rhodoblastus acidophilus M34128 18 16 12 67% 12 11 10 83% 5 6 5 100% 4 3 3 75% 3 2 2 67%
Rhodococcus erythropolis AF001265 14 17 10 71% 11 9 9 82% 5 5 5 100% 4 2 2 50% 2 2 2 100%
Rickettsia bellii U11014 15 16 11 73% 11 9 9 82% 5 4 4 80% 4 3 3 75% 2 2 2 100%
Rickettsia prowazekii M21789 15 17 11 73% 11 9 9 82% 5 4 4 80% 4 3 3 75% 2 2 2 100%
Rickettsia rickettsii L36217 15 14 10 67% 9 7 7 78% 4 3 3 75% 4 3 3 75% 1 1 1 100%
Salmonella typhimurium X80681 16 14 10 63% 13 9 8 62% 4 3 3 75% 4 2 2 50% 5 4 3 60%
Serratia marcescens M59160 16 16 11 69% 13 10 10 77% 4 4 4 100% 4 2 2 50% 5 4 4 80%
Shewanella putrefaciens X81623 14 17 11 79% 13 12 10 77% 4 4 4 100% 4 2 2 50% 5 6 4 80%
Shigella dysenteriae X96966 18 17 13 72% 13 10 9 69% 4 4 4 100% 4 3 2 50% 5 3 3 60%
Spirochaeta aurantia M57740 18 19 12 67% 14 10 9 64% 7 6 5 71% 5 2 2 40% 2 2 2 100%
Staphylococcus aureus L36472 15 19 15 100% 11 12 11 100% 4 4 4 100% 4 5 4 100% 3 3 3 100%
Streptobacillus moniliformis Z35305 13 11 7 54% 6 4 4 67% 2 2 2 100% 2 2 2 100% 2 0 0 0%
Streptococcus mutans X58303 17 18 12 71% 11 11 10 91% 4 4 4 100% 4 5 4 100% 3 2 2 67%
Streptococcus pneumoniae X58312 17 14 12 71% 11 10 9 82% 4 4 4 100% 4 5 4 100% 3 1 1 33%
Streptococcus pyogenes X59029 17 17 11 65% 10 9 8 80% 3 2 2 67% 4 5 4 100% 3 2 2 67%
Streptomyces acidiscabies D63865 15 21 13 87% 12 12 11 92% 4 4 3 75% 4 4 4 100% 4 4 4 100%
Streptomyces albidoflavus Z76676 14 17 10 71% 10 10 8 80% 4 5 4 100% 3 2 2 67% 3 3 2 67%
Streptomyces albus X53163 16 15 10 63% 10 9 8 80% 2 2 1 50% 4 3 3 75% 4 4 4 100%
Streptomyces ambofaciens M27245 15 21 12 80% 12 13 10 83% 4 7 4 100% 4 3 3 75% 4 3 3 75%
Streptomyces bikiniensis X79851 14 17 8 57% 11 9 7 64% 4 5 3 75% 4 2 2 50% 3 2 2 67%
Streptomyces bluensis X79324 14 20 10 71% 11 11 10 91% 4 4 4 100% 4 4 3 75% 3 3 3 100%
Streptomyces bottropensis D63868 15 21 11 73% 12 12 10 83% 4 6 4 100% 4 2 2 50% 4 4 4 100%
Streptomyces brasiliensis X53162 15 16 9 60% 10 10 9 90% 3 4 3 100% 4 3 3 75% 3 3 3 100%
Streptomyces caelestis X80824 14 21 11 79% 11 12 9 82% 4 6 4 100% 4 3 3 75% 3 3 2 67%
Streptomyces coelicolor Y00411 14 22 12 86% 11 12 10 91% 5 6 5 100% 3 2 2 67% 3 4 3 100%
Streptomyces diastaticus X53161 15 17 10 67% 9 9 8 89% 2 3 2 100% 4 3 3 75% 3 3 3 100%
Streptomyces diastatochromogenes D63867 15 21 12 80% 12 14 12 100% 4 6 4 100% 4 4 4 100% 4 4 4 100%
Streptomyces espinosus X80826 14 18 11 79% 10 11 9 90% 4 5 4 100% 4 3 3 75% 2 3 2 100%
Streptomyces eurythermus D63870 14 21 11 79% 11 12 9 82% 4 7 4 100% 4 3 3 75% 3 2 2 67%
Streptomyces felleus Z76681 14 17 10 71% 10 10 8 80% 4 5 4 100% 3 2 2 67% 3 3 2 67%
Streptomyces galbus X79325 14 18 10 71% 11 12 9 82% 4 6 4 100% 4 2 2 50% 3 4 3 100%
Streptomyces glaucescens X79322 14 20 10 71% 11 11 8 73% 4 6 3 75% 4 3 3 75% 3 2 2 67%
Streptomyces gougerotii Z76687 14 16 10 71% 11 10 9 82% 4 5 4 100% 4 2 2 50% 3 3 3 100%
Streptomyces griseus X61478 13 18 8 62% 10 12 7 70% 4 5 4 100% 3 3 1 33% 3 4 2 67%
Streptomyces hygroscopicus X79853 14 19 11 79% 11 13 10 91% 4 6 4 100% 4 3 3 75% 3 4 3 100%
Streptomyces intermedius Z76686 14 16 10 71% 11 10 9 82% 4 5 4 100% 4 2 2 50% 3 3 3 100%
Streptomyces lavendulae X53173 16 13 10 63% 10 9 8 80% 3 4 3 100% 4 2 2 50% 3 3 3 100%
Streptomyces limosus Z76679 14 17 10 71% 10 10 8 80% 4 5 4 100% 3 2 2 67% 3 3 2 67%
Streptomyces lincolnensis X79854 14 20 10 71% 11 12 9 82% 4 6 4 100% 4 2 2 50% 3 4 3 100%
Streptomyces macrosporus Z68099 16 22 12 75% 12 12 10 83% 4 4 3 75% 4 4 3 75% 4 4 4 100%
Streptomyces mashuensis X79323 15 23 13 87% 12 12 11 92% 4 5 4 100% 4 4 4 100% 4 3 3 75%
Streptomyces megasporus Z68100 14 22 10 71% 11 12 9 82% 4 6 3 75% 4 3 3 75% 3 3 3 100%
Streptomyces neyagawaensis D63869 15 19 10 67% 12 12 9 75% 4 6 4 100% 4 2 2 50% 4 4 3 75%
Streptomyces nodosus AF114033 14 19 10 71% 11 10 9 82% 4 4 4 100% 4 3 2 50% 3 3 3 100%
Streptomyces odorifer Z76682 14 17 10 71% 10 10 8 80% 4 5 4 100% 3 2 2 67% 3 3 2 67%
Streptomyces ornatus X79326 15 17 8 53% 11 11 7 64% 4 5 4 100% 4 3 1 25% 3 3 2 67%
Streptomyces pseudogriseolus X80827 14 19 10 71% 11 10 9 82% 4 5 4 100% 4 2 2 50% 3 3 3 100%
Streptomyces purpureus X53170 15 16 10 67% 9 9 8 89% 2 3 2 100% 4 3 3 75% 3 3 3 100%
Streptomyces rimosus X62884 15 20 10 67% 12 11 9 75% 4 6 4 100% 4 3 3 75% 4 2 2 50%
Streptomyces rutgersensis Z76688 14 16 10 71% 11 10 9 82% 4 5 4 100% 4 2 2 50% 3 3 3 100%
Streptomyces sampsonii D63871 14 17 10 71% 11 11 9 82% 4 5 4 100% 4 3 3 75% 3 3 2 67%
Streptomyces scabiei D63862 17 23 15 88% 13 14 13 100% 5 6 5 100% 4 4 4 100% 4 4 4 100%
Streptomyces setonii D63872 15 18 10 67% 12 11 9 75% 4 6 4 100% 4 2 2 50% 4 3 3 75%
Streptomyces sp. D63866 15 20 12 80% 12 11 10 83% 4 5 4 100% 4 4 4 100% 4 2 2 50%
Streptomyces subrutilus X80825 15 19 10 67% 11 11 8 73% 4 6 4 100% 4 2 2 50% 3 3 2 67%
Streptomyces tendae D63873 14 15 10 71% 11 10 9 82% 5 6 5 100% 3 1 1 33% 3 3 3 100%
Streptomyces thermodiastaticus Z68101 14 21 11 79% 11 12 9 82% 4 7 4 100% 4 3 3 75% 3 2 2 67%
Streptomyces thermolineatus Z68097 15 20 12 80% 12 12 10 83% 4 6 4 100% 4 2 2 50% 4 4 4 100%
Streptomyces thermoviolaceus Z68096 14 21 11 79% 11 12 9 82% 4 7 4 100% 4 3 3 75% 3 2 2 67%
Streptomyces thermovulgaris Z68098 15 21 12 80% 11 10 10 91% 4 4 4 100% 4 3 3 75% 3 3 3 100%
Synechococcus sp. PCC 6301 X03538 17 16 11 65% 14 10 10 71% 6 4 4 67% 4 2 2 50% 4 4 4 100%
Synechocystis sp. PCC 6803 D64000 D90916 16 15 11 69% 12 11 10 83% 7 8 7 100% 3 2 2 67% 2 1 1 50%
Thermomicrobium roseum M34115 14 16 10 71% 10 10 9 90% 5 4 4 80% 3 4 3 100% 2 2 2 100%
Thermotoga maritima M21774 16 15 14 88% 14 13 13 93% 7 7 7 100% 3 3 3 100% 4 3 3 75%
Thermus aquaticus L09663 16 19 14 88% 11 12 11 100% 6 7 6 100% 3 3 3 100% 2 2 2 100%
Thermus thermophilus X07998 15 17 13 87% 13 13 12 92% 7 8 7 100% 3 2 2 67% 3 3 3 100%
Treponema pallidum (rRNA A) AE001204 16 18 13 81% 12 11 11 92% 7 7 7 100% 4 3 3 75% 1 1 1 100%
Tropheryma whipplei X99636 15 17 12 80% 12 11 9 75% 7 9 7 100% 3 2 2 67% 2 0 0 0%
Ureaplasma urealyticum AE002112 15 15 10 67% 9 6 6 67% 6 4 4 67% 2 1 1 50% 1 1 1 100%
Vibrio cholerae X76337 17 16 13 76% 13 12 10 77% 5 6 5 100% 3 2 1 33% 5 4 4 80%
Vibrio parahaemolyticus X56580 14 19 8 57% 11 10 7 64% 3 5 3 100% 4 2 1 25% 4 3 3 75%
Xanthomonas albilineans X95918 16 17 13 81% 14 11 11 79% 5 4 4 80% 4 3 3 75% 5 4 4 80%
Xanthomonas campestris NPA 18 14 13 72% 13 9 9 69% 3 3 3 100% 4 3 3 75% 6 3 3 50%
Xylella fastidiosa AE003861 16 16 10 63% 13 9 8 62% 4 4 4 100% 5 2 1 20% 4 3 3 75%
Yersinia pestis L37604 18 13 12 67% 12 9 8 67% 4 4 4 100% 4 2 1 25% 4 3 3 75%
Yersinia pseudotuberculosis Z21939 16 18 11 69% 12 11 9 75% 4 5 4 100% 4 2 1 25% 4 4 4 100%
Eukaryotic Chloroplast   TL1 ESTL GVAA GHGA UWCG
C M P A C M P A C M P A C M P A C M P A
Apodanthes sp NPA 15 15 11 73% 10 8 8 80% 6 4 4 67% 2 2 2 100% 2 2 2 100%
Astasia longa X14386 13 14 9 69% 6 4 4 67% 4 3 3 75% 2 1 1 50% 0 0 0 0%
Babesia bovis U06105 12 9 5 42% 5 3 3 60% 3 3 3 100% 2 0 0 0% 0 0 0 0%
Chlamydomonas humicola AF374186 16 14 11 69% 9 9 9 100% 6 6 6 100% 2 2 2 100% 1 1 1 100%
Chlamydomonas reinhardtii J01395 16 17 9 56% 11 6 6 55% 6 5 5 83% 3 0 0 0% 2 1 1 50%
Chlorella vulgaris AB001684 15 16 12 80% 10 8 8 80% 6 5 5 83% 3 2 2 67% 1 1 1 100%
Corethron criophilum NPA 17 14 11 65% 11 8 8 73% 7 7 7 100% 2 1 1 50% 2 0 0 0%
Cryptomonas sp. X56805 16 18 11 69% 12 11 9 75% 7 9 7 100% 3 0 0 0% 2 2 2 100%
Cyanidium caldarium X52985 15 15 8 53% 8 7 6 75% 5 5 5 100% 2 1 1 50% 1 1 0 0%
Cyanophora paradoxa X81840 15 16 11 73% 11 9 8 73% 7 7 6 86% 3 1 1 33% 1 1 1 100%
Cynomorium coccineum U67743 15 17 6 40% 10 7 5 50% 7 6 4 57% 2 0 0 0% 1 1 1 100%
Cytinus ruber U47845 14 12 9 64% 7 6 6 86% 4 4 4 100% 2 1 1 50% 1 1 1 100%
Emiliania huxleyi X82156 15 22 11 73% 11 9 8 73% 6 5 4 67% 4 3 3 75% 1 1 1 100%
Euglena gracilis X12890 V00159 16 14 7 44% 11 6 6 55% 6 4 4 67% 3 0 0 0% 2 2 2 100%
Glaucocystis nostochinearum X82496 14 15 12 86% 12 10 10 83% 7 6 6 86% 3 2 2 67% 2 2 2 100%
Gloeochaete wittrockiana X82495 16 13 11 69% 13 9 9 69% 9 7 7 78% 2 1 1 50% 2 1 1 50%
Heterosigma akashiwo M82860 16 14 10 63% 11 9 8 73% 5 6 5 100% 3 2 2 67% 3 1 1 33%
Hydnora africana U67745 12 13 8 67% 8 5 5 63% 6 5 5 83% 1 0 0 0% 1 0 0 0%
Marchantia polymorpha X04465 15 14 13 87% 10 8 8 80% 6 6 6 100% 2 1 1 50% 2 1 1 50%
Mitrastema yamamotoi U67742 14 14 8 57% 9 6 6 67% 7 5 5 71% 1 0 0 0% 1 1 1 100%
Nicotiana tabacum V00165 16 17 11 69% 12 10 10 83% 8 8 8 100% 2 1 1 50% 2 1 1 50%
Palmaria palmata Z18289 16 14 10 63% 11 7 7 64% 7 4 4 57% 3 2 2 67% 1 1 1 100%
Pilostyles thurberi U67741 9 6 3 33% 4 2 2 50% 3 2 2 67% 1 0 0 0% 0 0 0 0%
Plasmodium falciparum (plastid-like) X57167 X95275 9 10 6 67% 6 4 4 67% 5 4 4 80% 1 0 0 0% 0 0 0 0%
Plasmodium vivax AF040974 14 7 3 21% 4 2 2 50% 3 2 2 67% 1 0 0 0% 0 0 0 0%
Polytoma obtusum AF374187 15 12 9 60% 8 8 7 88% 5 6 5 100% 2 1 1 50% 1 1 1 100%
Polytoma oviforme AF374188 17 16 12 71% 8 7 7 88% 5 5 5 100% 2 1 1 50% 1 1 1 100%
Polytoma uvella AF374189 16 19 11 69% 9 9 8 89% 6 7 6 100% 2 1 1 50% 1 1 1 100%
Pylaiella littoralis X14873 12 14 8 67% 9 7 6 67% 5 5 4 80% 3 2 2 67% 1 0 0 0%
Ricinus communis L37580 15 13 8 53% 12 8 8 67% 7 5 5 71% 2 1 1 50% 3 2 2 67%
Skeletonema pseudocostatum X82155 15 14 11 73% 11 9 8 73% 6 7 6 100% 3 1 1 33% 2 1 1 50%
Toxoplasma gondii U87145 13 16 8 62% 6 7 5 83% 4 5 4 100% 2 2 1 50% 0 0 0 0%
Zea mays Z00028 15 18 12 80% 11 9 9 82% 7 7 7 100% 2 1 1 50% 2 1 1 50%
Eukaryotic Mitochondrion   TL1 ESTL GVAA GHGA UWCG
C M P A C M P A C M P A C M P A C M P A
Acanthamoeba castellanii U03732 14 13 8 57% 7 4 4 57% 3 3 3 100% 4 1 1 25% 0 0 0 0%
Afrixalus fornasini NPA 8 8 4 50% 5 4 3 60% 4 3 3 75% 1 1 0 0% 0 0 0 0%
Albinaria caerulea X83390 5 6 3 60% 3 2 2 67% 3 2 2 67% 0 0 0 0% 0 0 0 0%
Alligator mississippiensis L28074 8 8 4 50% 2 3 2 100% 2 3 2 100% 0 0 0 0% 0 0 0 0%
Amblysomus hottentotus M95108 9 4 2 22% 3 3 2 67% 3 3 2 67% 0 0 0 0% 0 0 0 0%
Anas platyrhynchos L16770 7 7 2 29% 2 2 2 100% 2 2 2 100% 0 0 0 0% 0 0 0 0%
Anopheles gambiae L20934 4 2 2 50% 2 2 2 100% 2 2 2 100% 0 0 0 0% 0 0 0 0%
Anopheles quadrimaculatus L04272 4 4 2 50% 2 2 2 100% 2 2 2 100% 0 0 0 0% 0 0 0 0%
Antilocapra americana M55540 7 6 5 71% 3 3 3 100% 3 3 3 100% 0 0 0 0% 0 0 0 0%
Apis mellifera L06178 S51650 5 4 1 20% 2 1 1 50% 2 1 1 50% 0 0 0 0% 0 0 0 0%
Artemia franciscana X69067 3 4 1 33% 1 1 1 100% 1 1 1 100% 0 0 0 0% 0 0 0 0%
Ascaris suum X54253 2 3 2 100% 1 1 1 100% 1 1 1 100% 0 0 0 0% 0 0 0 0%
Aspergillus nidulans J01393 10 11 7 70% 6 4 4 67% 4 4 4 100% 2 0 0 0% 0 0 0 0%
Asterina pectinifera D16387 7 6 3 43% 1 2 1 100% 1 2 1 100% 0 0 0 0% 0 0 0 0%
Balaenoptera musculus X72204 8 11 5 63% 3 4 3 100% 3 4 3 100% 0 0 0 0% 0 0 0 0%
Bos taurus J01394 V00654 6 6 4 67% 3 2 2 67% 3 2 2 67% 0 0 0 0% 0 0 0 0%
Bufo boreas boreas Thesis, Goebel A. 7 7 2 29% 3 2 2 67% 2 2 2 100% 1 0 0 0% 0 0 0 0%
Bufo peltocephalus Thesis, Goebel A. 6 5 2 33% 3 1 1 33% 2 1 1 50% 1 0 0 0% 0 0 0 0%
Caenorhabditis elegans X54252 2 5 1 50% 1 1 1 100% 1 1 1 100% 0 0 0 0% 0 0 0 0%
Cafeteria roenbergensis AF193903 10 9 3 30% 6 3 2 33% 4 2 2 50% 2 1 0 0% 0 0 0 0%
Ceratophrys sp. Thesis, Goebel A. 6 10 3 50% 3 3 2 67% 2 3 2 100% 1 0 0 0% 0 0 0 0%
Chlamydomonas eugametos AF008237 8 8 4 50% 2 2 2 100% 2 2 2 100% 0 0 0 0% 0 0 0 0%
Chlamydomonas reinhardtii X54860 5 11 4 80% 3 5 3 100% 3 5 3 100% 0 0 0 0% 0 0 0 0%
Chondrus crispus Z30950 Z47547 12 7 5 42% 6 4 4 67% 4 2 2 50% 2 2 2 100% 0 0 0 0%
Chorthippus parallelus ESC X95574 3 2 1 33% 1 1 1 100% 1 1 1 100% 0 0 0 0% 0 0 0 0%
Chorthippus parallelus NOR X95575 3 2 1 33% 1 1 1 100% 1 1 1 100% 0 0 0 0% 0 0 0 0%
Chrysodidymus synuroideus NPA 11 10 5 45% 4 3 3 75% 2 2 2 100% 2 1 1 50% 0 0 0 0%
Chrysodidymus synuroideus mg AF222718 11 10 6 55% 4 2 2 50% 2 2 2 100% 2 0 0 0% 0 0 0 0%
Coscoroba coscoroba S76216 7 6 2 29% 1 1 1 100% 1 1 1 100% 0 0 0 0% 0 0 0 0%
Coturnix coturnix X57245 7 1 1 14% 0 0 0 0% 0 0 0 0% 0 0 0 0% 0 0 0 0%
Crithidia fasciculata X02548 1 1 0 0% 0 0 0 0% 0 0 0 0% 0 0 0 0% 0 0 0 0%
Crossostoma lacustre M91245 8 6 2 25% 3 2 2 67% 2 2 2 100% 1 0 0 0% 0 0 0 0%
Cygnus melancoryphus S76217 8 5 2 25% 2 1 1 50% 2 1 1 50% 0 0 0 0% 0 0 0 0%
Cyprinus carpio X61010 6 4 3 50% 3 2 3 100% 2 2 2 100% 1 0 1 100% 0 0 0 0%
Damaliscus pygargus M86499 8 9 4 50% 3 3 2 67% 3 2 2 67% 0 1 0 0% 0 0 0 0%
Daphnia pulex Z15015 4 4 1 25% 1 2 1 100% 1 2 1 100% 0 0 0 0% 0 0 0 0%
Dictyostelium discoideum D16466 10 13 6 60% 7 7 5 71% 5 6 4 80% 2 1 1 50% 0 0 0 0%
Didelphis virginiana Z29573 7 6 3 43% 2 2 2 100% 2 2 2 100% 0 0 0 0% 0 0 0 0%
Drosophila teissieri X54011 4 8 2 50% 2 2 2 100% 2 2 2 100% 0 0 0 0% 0 0 0 0%
Drosophila virilis X05914 4 6 1 25% 2 2 1 50% 2 2 1 50% 0 0 0 0% 0 0 0 0%
Drosophila yakuba X03240 4 8 2 50% 2 2 2 100% 2 2 2 100% 0 0 0 0% 0 0 0 0%
Eleutherodactylus coqui NPA 7 6 2 29% 1 1 1 100% 1 1 1 100% 0 0 0 0% 0 0 0 0%
Equus caballus X79547 7 4 3 43% 3 3 3 100% 3 3 3 100% 0 0 0 0% 0 0 0 0%
Farfantepenaeus notialis X84357 3 1 0 0% 1 0 0 0% 1 0 0 0% 0 0 0 0% 0 0 0 0%
Felis catus U20753 8 7 4 50% 3 2 2 67% 3 2 2 67% 0 0 0 0% 0 0 0 0%
Gallus gallus X52392 8 5 2 25% 1 1 1 100% 1 1 1 100% 0 0 0 0% 0 0 0 0%
Glycine max M16859 12 14 7 58% 4 5 3 75% 3 5 3 100% 1 0 0 0% 0 0 0 0%
Harpactes ardens U94810 5 8 1 20% 1 1 1 100% 1 1 1 100% 0 0 0 0% 0 0 0 0%
Harpochytrium sp. JEL94 AY182005 12 11 6 50% 4 6 3 75% 3 3 2 67% 1 2 1 100% 0 1 0 0%
Herpetomonas megaseliae U01006 0 3 0 0% 0 0 0 0% 0 0 0 0% 0 0 0 0% 0 0 0 0%
Homo sapiens J01415 8 12 4 50% 4 5 4 100% 4 5 4 100% 0 0 0 0% 0 0 0 0%
Katharina tunicata U09810 4 7 2 50% 0 1 0 0% 0 1 0 0% 0 0 0 0% 0 0 0 0%
Latimeria chalumnae Z21921 7 5 4 57% 3 2 2 67% 2 2 2 100% 1 0 0 0% 0 0 0 0%
Leishmania tarentolae M10126 1 4 1 100% 0 0 0 0% 0 0 0 0% 0 0 0 0% 0 0 0 0%
Locusta migratoria X80245 4 3 1 25% 1 1 1 100% 1 1 1 100% 0 0 0 0% 0 0 0 0%
Loxodonta africana U60182 D50847 7 7 4 57% 2 3 2 100% 2 3 2 100% 0 0 0 0% 0 0 0 0%
Lumbricus terrestris U24570 5 6 3 60% 1 2 1 100% 1 2 1 100% 0 0 0 0% 0 0 0 0%
Lutreolina crassicaudata U33494 9 6 3 33% 2 2 2 100% 2 2 2 100% 0 0 0 0% 0 0 0 0%
Macropus giganteus X86941 9 5 4 44% 2 2 2 100% 2 2 2 100% 0 0 0 0% 0 0 0 0%
Magicicada tredecim NPA 5 3 2 40% 1 1 1 100% 1 1 1 100% 0 0 0 0% 0 0 0 0%
Marchantia polymorpha M68292 11 14 6 55% 3 5 3 100% 3 5 3 100% 0 0 0 0% 0 0 0 0%
Metridium senile S75445 6 9 5 83% 3 5 3 100% 3 5 3 100% 0 0 0 0% 0 0 0 0%
Monosiga brevicollis AF538053 10 13 4 40% 5 4 3 60% 4 3 2 50% 0 0 0 0% 1 1 1 100%
Mus musculus J01420 10 7 5 50% 3 3 3 100% 3 3 3 100% 0 0 0 0% 0 0 0 0%
Muscardinus avellanarius X84384 8 7 3 38% 3 2 2 67% 3 2 2 67% 0 0 0 0% 0 0 0 0%
Mytilus edulis M83756 5 6 3 60% 2 2 2 100% 2 2 2 100% 0 0 0 0% 0 0 0 0%
Nephroselmis olivacea AF110138 11 14 10 91% 6 7 5 83% 3 4 3 100% 2 2 1 50% 1 1 1 100%
Neurospora crassa L33367 8 14 3 38% 5 3 2 40% 3 2 1 33% 2 1 1 50% 0 0 0 0%
Ochromonas danica AF287134 10 11 5 50% 7 4 4 57% 4 4 4 100% 3 0 0 0% 0 0 0 0%
Oenothera berteriana X61277 12 15 6 50% 4 6 4 100% 3 3 3 100% 1 2 1 100% 0 1 0 0%
Oncorhynchus mykiss L29771 8 7 4 50% 4 4 3 75% 3 4 3 100% 1 0 0 0% 0 0 0 0%
Ornithorhynchus anatinus U33498 X83427 8 9 4 50% 3 2 2 67% 3 2 2 67% 0 0 0 0% 0 0 0 0%
Pan troglodytes D38113 7 10 4 57% 4 4 4 100% 4 4 4 100% 0 0 0 0% 0 0 0 0%
Paracentrotus lividus J04815 3 3 2 67% 0 0 0 0% 0 0 0 0% 0 0 0 0% 0 0 0 0%
Paramecium tetraurelia K01751 9 11 1 11% 4 3 1 25% 3 3 1 33% 1 0 0 0% 0 0 0 0%
Pedinomonas minor AF116775 10 4 3 30% 2 1 0 0% 2 1 0 0% 0 0 0 0% 0 0 0 0%
Penicillium chrysogenum Z23072 9 12 6 67% 7 6 5 71% 5 4 4 80% 2 2 1 50% 0 0 0 0%
Petromyzon marinus U11880 9 7 3 33% 3 3 3 100% 3 3 3 100% 0 0 0 0% 0 0 0 0%
Phalanger orientalis U33496 8 4 2 25% 2 2 2 100% 2 2 2 100% 0 0 0 0% 0 0 0 0%
Phascogale tapoatafa U33497 8 5 4 50% 2 2 2 100% 2 2 2 100% 0 0 0 0% 0 0 0 0%
Phoca vitulina X63726 7 9 3 43% 3 2 2 67% 3 2 2 67% 0 0 0 0% 0 0 0 0%
Physarum polycephalum X75592 11 7 5 45% 5 3 3 60% 2 1 1 50% 3 2 2 67% 0 0 0 0%
Phytophthora infestans U17009 10 7 6 60% 5 2 2 40% 4 2 2 50% 1 0 0 0% 0 0 0 0%
Pichia canadensis D49702 D31785 8 9 2 25% 4 2 2 50% 3 2 2 67% 1 0 0 0% 0 0 0 0%
Podospora anserina X14734 11 18 5 45% 5 4 2 40% 3 3 1 33% 2 1 1 50% 0 0 0 0%
Porphyra purpurea AF114794 9 11 6 67% 6 4 4 67% 5 4 4 80% 1 0 0 0% 0 0 0 0%
Protopterus dolloi L42813 5 6 2 40% 1 0 0 0% 1 0 0 0% 0 0 0 0% 0 0 0 0%
Prototheca wickerhamii X15435 13 16 11 85% 7 6 6 86% 5 5 5 100% 2 1 1 50% 0 0 0 0%
Puma concolor U33495 8 6 4 50% 3 3 2 67% 3 3 2 67% 0 0 0 0% 0 0 0 0%
Pylaiella littoralis X14874 11 9 7 64% 4 4 4 100% 3 3 3 100% 1 1 1 100% 0 0 0 0%
Rana catesbeiana X12841 7 7 4 57% 3 2 2 67% 2 2 2 100% 1 0 0 0% 0 0 0 0%
Rattus norvegicus J01438 9 6 4 44% 3 3 3 100% 3 3 3 100% 0 0 0 0% 0 0 0 0%
Reclinomonas americana AF007261 13 13 12 92% 8 9 8 100% 5 5 5 100% 2 3 2 100% 1 1 1 100%
Rhizopus stolonifer NPA 11 11 9 82% 5 6 5 100% 3 4 3 100% 2 2 2 100% 0 0 0 0%
Rhodomonas salina AF288090 10 11 7 70% 5 5 5 100% 5 5 5 100% 0 0 0 0% 0 0 0 0%
Saccharomyces cerevisiae V00704 10 12 6 60% 7 6 5 71% 7 6 5 71% 0 0 0 0% 0 0 0 0%
Salmo salar U12143 9 6 4 44% 4 4 3 75% 3 3 2 67% 1 1 1 100% 0 0 0 0%
Sceloporus undulatus L28075 5 6 3 60% 1 1 1 100% 1 1 1 100% 0 0 0 0% 0 0 0 0%
Schizosaccharomyces pombe X15738 12 7 6 50% 5 3 3 60% 5 3 3 60% 0 0 0 0% 0 0 0 0%
Scyliorhinus canicula Y16067 7 8 4 57% 3 3 3 100% 2 2 2 100% 1 1 1 100% 0 0 0 0%
Secale cereale Z14059 12 10 4 33% 4 3 3 75% 3 3 3 100% 1 0 0 0% 0 0 0 0%
Sphenodon punctatus L28076 6 6 2 33% 3 2 2 67% 2 2 2 100% 1 0 0 0% 0 0 0 0%
Spizellomyces punctatus AF404303 10 7 4 40% 4 3 3 75% 3 3 3 100% 1 0 0 0% 0 0 0 0%
Stenella coeruleoalba X78169 6 7 4 67% 3 4 3 100% 3 4 3 100% 0 0 0 0% 0 0 0 0%
Suillus sinuspaulianus L47584 13 13 7 54% 3 2 2 67% 2 2 2 100% 1 0 0 0% 0 0 0 0%
Tetrahymena pyriformis M12714 9 9 6 67% 4 4 3 75% 3 4 3 100% 1 0 0 0% 0 0 0 0%
Trachemys scripta L28077 6 5 3 50% 2 3 2 100% 1 2 1 100% 1 1 1 100% 0 0 0 0%
Triticum aestivum Z14078 12 14 9 75% 4 7 4 100% 3 4 3 100% 1 2 1 100% 0 1 0 0%
Trypanosoma brucei X02547 1 2 0 0% 0 0 0 0% 0 0 0 0% 0 0 0 0% 0 0 0 0%
Williopsis saturnus var. mrakii X71392 7 9 3 43% 5 4 3 60% 4 3 3 75% 1 1 0 0% 0 0 0 0%
Xenopus laevis M27605 6 8 4 67% 3 3 3 100% 2 2 2 100% 1 1 1 100% 0 0 0 0%
Zea mays X00794 9 12 6 67% 4 6 4 100% 3 4 3 100% 1 2 1 100% 0 0 0 0%
Eukaryotic Nuclear   TL1 ESTL GVAA GHGA UWCG
C M P A C M P A C M P A C M P A C M P A
Acanthamoeba castellanii U07413 12 16 7 58% 6 5 4 67% 5 5 4 80% 1 0 0 0% 0 0 0 0%
Agmasoma penaei NPA 10 6 2 20% 3 4 2 67% 3 3 2 67% 0 1 0 0% 0 0 0 0%
Ahnfeltia plicata Z14139 10 11 4 40% 4 4 2 50% 2 4 1 50% 2 0 1 50% 0 0 0 0%
Alexandrium fundyense U09048 10 16 5 50% 5 6 4 80% 3 5 3 100% 1 0 0 0% 1 1 1 100%
Amblyospora sp. U68474 12 10 4 33% 6 6 3 50% 3 3 2 67% 3 3 1 33% 0 0 0 0%
Ameson michaelis L15741 11 7 3 27% 3 3 1 33% 2 2 1 50% 1 1 0 0% 0 0 0 0%
Androctonus australis X77908 12 7 5 42% 5 2 2 40% 3 1 1 33% 1 0 0 0% 1 1 1 100%
Antonospora scoticae AF024655 10 15 7 70% 4 6 3 75% 1 3 1 100% 3 2 2 67% 0 1 0 0%
Artemia salina X01723 12 16 5 42% 5 7 2 40% 2 5 0 0% 2 1 1 50% 1 1 1 100%
Audouinella dasyae L26181 12 19 8 67% 4 4 2 50% 3 4 2 67% 1 0 0 0% 0 0 0 0%
Audouinella hermannii AF026040 12 18 9 75% 7 8 6 86% 4 5 3 75% 2 2 2 100% 1 1 1 100%
Aulacoseira ambigua X85404 11 12 4 36% 5 3 1 20% 3 2 0 0% 2 1 1 50% 0 0 0 0%
Babesia bigemina X59604 12 13 6 50% 6 6 4 67% 4 5 3 75% 1 0 0 0% 1 1 1 100%
Bacillidium sp. AF104087 12 12 4 33% 4 6 3 75% 2 4 2 100% 2 1 1 50% 0 1 0 0%
Balamuthia mandrillaris AF019071 12 14 8 67% 8 9 7 88% 6 8 6 100% 1 0 0 0% 1 1 1 100%
Balbiania investiens AF132294 11 14 6 55% 5 5 3 60% 3 4 2 67% 1 0 0 0% 1 1 1 100%
Bangia sp. (Northwest Territories/NWT) AF043355 13 15 7 54% 5 5 3 60% 3 4 2 67% 1 0 0 0% 1 1 1 100%
Bangiopsis subsimplex AF168627 11 13 5 45% 6 7 4 67% 3 4 2 67% 1 0 0 0% 2 3 2 100%
Batrachospermum gelatinosum AF026045 10 14 6 60% 4 4 2 50% 2 3 1 50% 2 1 1 50% 0 0 0 0%
Batrachospermum macrosporum AF026048 11 16 8 73% 5 6 4 80% 3 5 3 100% 2 1 1 50% 0 0 0 0%
Bonnemaisonia hamifera L26182 8 13 4 50% 4 4 2 50% 3 4 2 67% 1 0 0 0% 0 0 0 0%
Bostrychia moritziana AF203893 9 13 5 56% 4 4 2 50% 3 3 2 67% 1 1 0 0% 0 0 0 0%
Candida albicans M60302 13 16 10 77% 6 8 5 83% 3 6 3 100% 2 1 1 50% 1 1 1 100%
Ceramium rubrum L26183 9 14 5 56% 4 5 2 50% 3 5 2 67% 1 0 0 0% 0 0 0 0%
Chlorella luteoviridis X73998 14 14 8 57% 4 3 2 50% 3 2 1 33% 1 1 1 100% 0 0 0 0%
Chondrus crispus Z14140 10 12 6 60% 4 4 2 50% 2 3 1 50% 2 1 1 50% 0 0 0 0%
Compsopogon coeruleus AF087124 12 15 6 50% 6 7 4 67% 4 6 3 75% 1 0 0 0% 1 1 1 100%
Corallina officinalis L26184 10 11 4 40% 5 4 2 40% 4 4 2 50% 1 0 0 0% 0 0 0 0%
Crossodonthina koreana Z36893 13 11 6 46% 6 3 2 33% 4 3 2 50% 1 0 0 0% 1 0 0 0%
Cryptocercus punctulatus NPA 9 15 5 56% 6 7 4 67% 4 6 3 75% 2 1 1 50% 0 0 0 0%
Cryptococcus neoformans var. neoformans L05428 13 14 9 69% 7 5 5 71% 4 4 4 100% 2 1 1 50% 1 0 0 0%
Culicosporella lunata AF027683 11 10 7 64% 5 5 4 80% 4 5 4 100% 1 0 0 0% 0 0 0 0%
Cyanophora paradoxa X68483 9 15 5 56% 5 5 3 60% 4 5 3 75% 1 0 0 0% 0 0 0 0%
Cymatosira belgica X85387 11 14 6 55% 6 5 4 67% 3 2 2 67% 2 1 1 50% 1 2 1 100%
Cyrtohymena citrina AF164135 10 14 7 70% 4 5 3 75% 2 4 2 100% 2 1 1 50% 0 0 0 0%
Dixonielloa grisea L26187 9 12 6 67% 4 6 3 75% 2 5 2 100% 1 0 0 0% 1 1 1 100%
Drosophila melanogaster M21017 10 11 6 60% 5 3 3 60% 3 2 2 67% 2 1 1 50% 0 0 0 0%
Echinococcus granulosus U27015 10 11 3 30% 5 4 2 40% 3 2 2 67% 2 1 0 0% 0 1 0 0%
Edhazardia aedis AF027684 12 11 7 58% 3 3 2 67% 2 3 2 100% 1 0 0 0% 0 0 0 0%
Encephalitozoon cuniculi X98467 13 5 3 23% 5 3 3 60% 3 3 3 100% 1 0 0 0% 1 0 0 0%
Encephalitozoon hellem AF118143 13 8 4 31% 3 3 3 100% 2 2 2 100% 1 1 1 100% 0 0 0 0%
Encephalitozoon sp. L16867 13 7 4 31% 4 4 3 75% 3 3 3 100% 1 1 0 0% 0 0 0 0%
Endoreticulatus schubergi L39109 9 9 5 56% 4 4 3 75% 4 4 3 75% 0 0 0 0% 0 0 0 0%
Engelmanniella mobilis AF164134 11 13 6 55% 4 4 2 50% 2 3 1 50% 2 1 1 50% 0 0 0 0%
Enterocytozoonidae gen. sp. AF201911 10 7 4 40% 3 3 2 67% 2 2 1 50% 0 0 0 0% 1 1 1 100%
Erythrotrichia carnea L26189 11 12 6 55% 4 4 2 50% 3 4 2 67% 1 0 0 0% 0 0 0 0%
Euglypha rotunda X77692 13 12 7 54% 6 5 4 67% 4 4 3 75% 2 1 1 50% 0 0 0 0%
Euplotes aediculatus M14590 14 14 8 57% 6 4 3 50% 4 4 3 75% 1 0 0 0% 1 0 0 0%
Flabelliforma montana AJ252962 11 8 4 36% 4 2 2 50% 2 1 1 50% 2 1 1 50% 0 0 0 0%
Fragaria x ananassa X15590 9 10 2 22% 4 5 1 25% 2 4 1 50% 1 0 0 0% 1 1 0 0%
Gastrostyla steinei AF164133 10 9 4 40% 4 3 2 50% 2 2 1 50% 2 1 1 50% 0 0 0 0%
Gelidium vagum L26190 9 9 4 44% 4 4 2 50% 2 3 1 50% 2 1 1 50% 0 0 0 0%
Genicularia spirotaenia X74753 12 18 8 67% 8 8 6 75% 4 5 4 100% 1 1 0 0% 3 2 2 67%
Giardia ardeae Z17210 11 13 5 45% 4 3 3 75% 2 1 1 50% 2 2 2 100% 0 0 0 0%
Giardia intestinalis X52949 10 12 4 40% 5 4 3 60% 1 2 1 100% 4 2 2 50% 0 0 0 0%
Giardia muris X65063 10 9 6 60% 3 3 3 100% 2 2 2 100% 1 1 1 100% 0 0 0 0%
Glaucocystis nostochinearum X70803 11 15 5 45% 5 4 2 40% 3 4 2 67% 1 0 0 0% 1 0 0 0%
Gloeochaete wittrockiana X81901 10 16 6 60% 5 4 3 60% 3 3 2 67% 1 0 0 0% 1 1 1 100%
Glomus intraradices X58725 10 14 6 60% 7 7 5 71% 6 7 5 83% 1 0 0 0% 0 0 0 0%
Glugea atherinae U15987 12 14 7 58% 5 5 4 80% 3 4 3 100% 2 1 1 50% 0 0 0 0%
Glugea stephani AF056015 11 10 5 45% 5 5 4 80% 3 4 3 100% 2 1 1 50% 0 0 0 0%
Gracilariopsis sp. M33639 9 16 6 67% 5 7 4 80% 3 5 3 100% 2 2 1 50% 0 0 0 0%
Halymenia plana U33133 11 13 6 55% 5 6 3 60% 3 5 2 67% 2 1 1 50% 0 0 0 0%
Hexamita sp. Z17224 13 11 6 46% 3 4 2 67% 3 3 2 67% 0 1 0 0% 0 0 0 0%
Hildenbrandia rubra L19345 13 15 8 62% 6 6 4 67% 5 5 4 80% 1 1 0 0% 0 0 0 0%
Homo sapiens K03432 13 15 7 54% 4 3 1 25% 2 2 0 0% 2 1 1 50% 0 0 0 0%
Ichthyosporidium sp. L39110 10 11 4 40% 3 3 0 0% 2 2 0 0% 1 1 0 0% 0 0 0 0%
Janacekia debaisieuxi AJ252950 11 10 6 55% 4 6 4 100% 2 4 2 100% 2 2 2 100% 0 0 0 0%
Lecanora dispersa NPA 13 13 6 46% 7 7 5 71% 5 7 5 100% 1 0 0 0% 1 0 0 0%
Lilioceris lilii NPA 15 17 10 67% 8 7 6 75% 3 3 2 67% 2 1 1 50% 3 3 3 100%
Loma acerinae AJ252951 10 14 8 80% 6 7 6 100% 4 5 4 100% 2 2 2 100% 0 0 0 0%
Mastigamoeba balamuthi L23799 14 24 10 71% 8 13 7 88% 8 12 7 88% 0 1 0 0% 0 0 0 0%
Microgemma sp. AJ252952 8 7 4 50% 5 4 3 60% 3 3 2 67% 2 1 1 50% 0 0 0 0%
Microsporidium 57864 U90885 7 6 3 43% 4 3 3 75% 3 3 3 100% 1 0 0 0% 0 0 0 0%
Mus musculus X00686 13 15 6 46% 5 3 1 20% 3 2 0 0% 2 1 1 50% 0 0 0 0%
Mytilus edulis L24489 13 14 8 62% 7 5 4 57% 6 5 4 67% 1 0 0 0% 0 0 0 0%
Naegleria gruberi Thesis, Mullican J. 12 14 4 33% 7 9 3 43% 4 4 1 25% 1 0 0 0% 2 5 2 100%
Nemalion helminthoides L26196 11 17 8 73% 5 6 4 80% 2 3 1 50% 2 2 2 100% 1 1 1 100%
Nemalionopsis shawii AF506272 13 16 9 69% 7 9 6 86% 4 7 4 100% 2 1 1 50% 1 1 1 100%
Nosema algerae AF069063 12 11 5 42% 4 3 1 25% 2 2 1 50% 2 1 0 0% 0 0 0 0%
Nosema apis U97150 8 9 4 50% 4 3 3 75% 3 3 3 100% 1 0 0 0% 0 0 0 0%
Nosema necatrix U11051 10 7 3 30% 5 3 3 60% 4 3 3 75% 1 0 0 0% 0 0 0 0%
Okanagana utahensis U06478 12 16 7 58% 7 6 4 57% 4 4 2 50% 2 1 1 50% 1 1 1 100%
Onychodromus quadricornutus X53485 10 10 4 40% 4 3 2 50% 2 2 1 50% 2 1 1 50% 0 0 0 0%
Ophiopholis aculeata L28056 11 13 6 55% 5 4 2 40% 3 3 1 33% 1 0 0 0% 1 1 1 100%
Oxytricha granulifera AF164122 10 15 6 60% 4 4 2 50% 2 3 1 50% 2 1 1 50% 0 0 0 0%
Oxytricha longa AF164125 11 15 6 55% 4 5 3 75% 2 4 2 100% 2 1 1 50% 0 0 0 0%
Palmaria palmata Z14142 12 14 7 58% 5 4 3 60% 3 3 2 67% 1 0 0 0% 1 1 1 100%
Paraurostyla weissei AF164127 10 14 5 50% 3 4 2 67% 2 4 2 100% 1 0 0 0% 0 0 0 0%
Paruroleptus lepisma AF164132 10 10 4 40% 5 4 3 60% 3 4 3 100% 1 0 0 0% 1 0 0 0%
Paulinella chromatophora X81811 11 11 5 45% 7 4 4 57% 4 3 3 75% 1 0 0 0% 2 1 1 50%
Placopecten magellanicus X53899 13 13 8 62% 7 5 5 71% 6 5 5 83% 1 0 0 0% 0 0 0 0%
Plasmodium falciparum (A gene) M19172 9 11 7 78% 4 5 4 100% 3 4 3 100% 0 0 0 0% 1 1 1 100%
Plasmodium falciparum (S gene) M19173 10 13 6 60% 4 4 3 75% 4 4 3 75% 0 0 0 0% 0 0 0 0%
Plasmodium vivax (A gene) U07367 10 10 7 70% 5 6 5 100% 3 4 3 100% 0 0 0 0% 2 2 2 100%
Plasmodium vivax (O gene) U93095 9 14 5 56% 5 7 4 80% 3 3 3 100% 0 2 0 0% 2 2 1 50%
Plasmodium vivax (S gene) U07368 11 15 8 73% 3 4 3 100% 2 3 2 100% 0 0 0 0% 1 1 1 100%
Pleistophora hippoglossoideos AJ252953 10 14 7 70% 4 6 4 100% 2 4 2 100% 2 2 2 100% 0 0 0 0%
Pleistophora sp. U10342 11 7 5 45% 4 4 3 75% 4 4 3 75% 0 0 0 0% 0 0 0 0%
Pleurotricha lanceolota AF164128 10 12 6 60% 4 4 3 75% 2 3 2 100% 2 1 1 50% 0 0 0 0%
Plocamiocolax pulvinata U09618 9 13 5 56% 5 7 4 80% 3 6 3 100% 2 1 1 50% 0 0 0 0%
Polydispyrenia simulii AJ252960 11 9 3 27% 4 2 2 50% 2 1 1 50% 2 1 1 50% 0 0 0 0%
Porphyra miniata AF175540 12 12 4 33% 5 3 1 20% 3 3 1 33% 1 0 0 0% 1 0 0 0%
Porphyridium aerugineum L27635 15 16 9 60% 9 9 7 78% 7 8 6 86% 1 0 0 0% 1 1 1 100%
Reticulitermes flavipes NPA 11 13 6 55% 7 7 4 57% 4 4 2 50% 2 2 1 50% 1 1 1 100%
Rhodella maculata U21217 13 14 6 46% 6 7 5 83% 2 3 2 100% 1 1 0 0% 3 3 3 100%
Rhodochaete parvula AF139462 10 13 5 50% 5 6 4 80% 3 5 3 100% 1 0 0 0% 1 1 1 100%
Rhodogorgon carriebowensis AF006089 9 14 6 67% 5 5 4 80% 3 4 3 100% 1 0 0 0% 1 1 1 100%
Rhodymenia leptophylla U09621 12 12 5 42% 4 5 2 50% 2 4 1 50% 2 1 1 50% 0 0 0 0%
Saccharomyces cerevisiae U53879 12 16 8 67% 6 7 5 83% 3 5 3 100% 2 1 1 50% 1 1 1 100%
Spraguea lophii AF033197 9 10 4 44% 5 6 3 60% 4 5 3 75% 1 1 0 0% 0 0 0 0%
Staurastrum sp. M752 X74752 12 16 8 67% 6 7 5 83% 4 5 4 100% 1 1 0 0% 1 1 1 100%
Strongylocentrotus purpuratus L28055 12 18 9 75% 5 6 3 60% 4 5 3 75% 1 1 0 0% 0 0 0 0%
Stylonychia lemnae AF164124 11 13 7 64% 4 4 2 50% 2 3 1 50% 2 1 1 50% 0 0 0 0%
Stylonychia mytilus AF164123 10 12 6 60% 4 4 3 75% 2 3 2 100% 2 1 1 50% 0 0 0 0%
Thalassiosira eccentrica X85396 12 13 5 42% 6 5 3 50% 3 3 2 67% 2 1 1 50% 1 1 0 0%
Thelohania solenopsae AF031538 9 7 3 33% 4 2 2 50% 2 1 1 50% 2 1 1 50% 0 0 0 0%
Thelohania sp. AF031537 12 8 3 25% 4 3 2 50% 3 2 2 67% 1 1 0 0% 0 0 0 0%
Thorea hispida AF506273 12 16 7 58% 7 8 5 71% 4 6 3 75% 2 1 1 50% 1 1 1 100%
Thorea violacea AF026042 13 16 8 62% 7 7 5 71% 4 5 3 75% 2 1 1 50% 1 1 1 100%
Thorea violacea AF506274 13 16 8 62% 7 9 6 86% 4 6 3 75% 2 2 2 100% 1 1 1 100%
Toxoplasma gondii (P) X75453 13 13 7 54% 4 5 3 75% 2 4 2 100% 1 0 0 0% 1 1 1 100%
Trachipleistophora hominis AJ002605 10 13 7 70% 4 4 3 75% 2 3 2 100% 2 1 1 50% 0 0 0 0%
Tritrichomonas foetus M81842 10 11 6 60% 4 5 3 75% 4 4 3 75% 0 1 0 0% 0 0 0 0%
Uroleptus gallina AF164130 9 15 6 67% 4 5 3 75% 2 4 2 100% 2 1 1 50% 0 0 0 0%
Uroleptus pisces AF164131 9 10 4 44% 4 4 2 50% 2 3 1 50% 2 1 1 50% 0 0 0 0%
Urostyla grandis AF164129 10 8 4 40% 5 4 3 60% 2 2 1 50% 2 1 1 50% 1 1 1 100%
Vairimorpha necatrix Y00266 M24612 9 7 3 33% 4 3 3 75% 3 3 3 100% 1 0 0 0% 0 0 0 0%
Vairimorpha sp. Argentina AF031539 11 11 7 64% 5 7 4 80% 4 5 3 75% 1 2 1 100% 0 0 0 0%
Vavraia culicis AJ252961 9 12 5 56% 4 5 4 100% 2 3 2 100% 2 2 2 100% 0 0 0 0%
Visvesvaria acridophagus AF024658 9 8 5 56% 3 1 1 33% 2 1 1 50% 1 0 0 0% 0 0 0 0%
Weiseria palustris AF132544 12 11 6 50% 5 3 3 60% 3 2 2 67% 1 1 1 100% 1 0 0 0%
Xenopus laevis X04025 13 17 7 54% 5 4 2 40% 3 3 1 33% 2 1 1 50% 0 0 0 0%
  1. TL, Tetraloop, hairpin loop of size 4; ESTL, Extra-stable tetraloops, hairpin loops of size 4 with sequence compositions of either GVAA, GHGA or UWCG; GVAA, Tetraloop with sequence composition of GGAA, GCAA or GAAA; GHGA, Tetraloop with sequence composition of GAGA, GCGA, GUGA; UWCG, Tetraloop with sequence composition of UACG or UUCG; C, Number in the comparatively predicted structure model; M, Number in the MFold 3.1 optimal structure prediction; P - Number Predicted Correctly in the MFold 3.1 optimal structure prediction; A - Percent Predicted Correctly in the MFold 3.1 optimal structure prediction.
  2. NPA, Not Publically Available - The sequence used for analysis has not been deposited in Genbank.