Archaea   Paired Unpaired Ratio1 A2 G C U
C M C M C M PC UPC PM UPM PC UPC PM UPM PC UPC PM UPM PC UPC PM UPM
Aeropyrum pernix AP000062 942 982 559 519 63%/37% 65%/35% 57 221 70 208 421 148 421 148 371 87 380 78 93 103 111 85
Archaeoglobus fulgidus X05567 AE000965 942 992 550 500 63%/37% 66%/34% 76 230 94 212 406 128 402 132 345 74 346 73 115 118 150 83
Haloarcula marismortui rrnA X61688 922 950 550 522 63%/37% 65%/35% 110 238 123 225 355 121 352 124 302 79 299 82 155 112 176 91
Haloarcula marismortui rrnB X61689 922 958 550 514 63%/37% 65%/35% 122 240 137 225 343 119 342 120 291 78 286 83 166 113 193 86
Halobacterium sp. AE005128 924 960 549 513 63%/37% 65%/35% 108 234 130 212 356 127 350 133 301 75 300 76 159 113 180 92
Haloferax volcanii K00421 916 960 558 514 62%/38% 65%/35% 120 239 133 226 345 121 347 119 293 80 297 76 158 118 183 93
Methanobacterium formicicum M36508 924 922 552 554 63%/37% 62%/38% 111 237 125 223 354 118 336 136 286 69 278 77 173 128 183 118
Methanococcus jannaschii U67517 L77117 930 998 548 480 63%/37% 68%/32% 75 220 94 201 397 130 405 122 342 84 350 76 116 114 149 81
Methanococcus vannielii M36507 920 942 546 524 63%/37% 64%/36% 116 219 130 205 351 123 341 133 289 82 287 84 164 122 184 102
Methanospirillum hungatei M60880 913 894 552 571 62%/38% 61%/39% 122 234 123 233 341 130 324 147 275 72 271 76 175 116 176 115
Methanothermobacter thermautotrophicus AE000930 926 940 553 539 63%/37% 64%/36% 108 230 114 224 360 122 356 126 299 77 298 78 159 124 172 111
Natronobacterium innermongoliae AF009601 920 950 552 522 63%/38% 65%/35% 113 229 124 218 353 128 351 130 294 77 295 76 160 118 180 98
Natronorubrum bangense Y14028 922 964 553 511 63%/37% 65%/35% 116 235 132 219 350 125 350 125 293 80 298 75 163 113 184 92
Pyrococcus abyssi AJ248283 948 1000 564 512 63%/37% 66%/34% 64 227 79 212 416 139 421 134 366 79 373 72 102 119 127 94
Pyrococcus furiosus U20163 938 976 557 519 63%/37% 65%/35% 64 227 75 216 412 139 413 138 361 77 364 74 101 114 124 91
Pyrococcus horikoshii AP000001 946 988 554 512 63%/37% 66%/34% 64 225 75 214 415 139 419 135 365 75 369 71 102 115 125 92
Pyrodictium occultum M21087 935 956 559 538 63%/37% 64%/36% 51 229 62 218 424 141 416 149 373 90 376 87 87 99 102 84
Sulfolobus acidocaldarius D14876 936 988 556 504 63%/37% 66%/34% 83 240 101 222 392 127 393 126 339 79 348 70 122 110 146 86
Sulfolobus P2 NPA3 938 982 557 513 63%/37% 66%/34% 82 241 97 226 394 125 394 125 333 82 339 76 129 109 152 86
Sulfolobus solfataricus X03235 936 988 556 504 63%/37% 66%/34% 82 240 101 221 392 127 393 126 340 79 348 71 122 110 146 86
Thermococcus celer M21529 936 982 550 504 63%/37% 66%/34% 65 226 78 213 409 137 413 133 354 77 357 74 108 110 134 84
Thermoplasma acidophilum AL445067 M38637 922 938 549 533 63%/37% 64%/36% 127 239 133 233 340 116 336 120 277 75 279 73 178 119 190 107
Thermoproteus tenax M35966 950 1010 553 493 63%/37% 67%/33% 63 234 91 206 421 141 414 148 366 83 374 75 100 95 131 64
Bacteria   Paired Unpaired Ratio1 A2 G C U
C M C M C M PC UPC PM UPM PC UPC PM UPM PC UPC PM UPM PC UPC PM UPM
Acidobacterium capsulatum D26171 870 856 548 562 61%/39% 60%/40% 106 244 99 251 339 113 329 123 262 77 256 83 163 114 172 105
Acinetobacter calcoaceticus M34139 929 898 577 608 62%/38% 60%/40% 143 244 137 250 328 132 312 148 254 75 250 79 204 126 199 131
Actinomyces israelii X82450 893 904 546 535 62%/38% 63%/37% 65 190 97 158 386 148 355 179 278 59 277 60 164 149 175 138
Aeromonas hydrophila X60407 937 920 565 582 62%/38% 61%/39% 126 243 121 248 352 140 339 153 276 67 272 71 183 115 188 110
Agrobacterium tumefaciens M11223 904 942 585 547 61%/39% 63%/37% 121 243 136 228 341 130 335 136 262 82 266 78 180 130 205 105
Allochromatium vinosum M26629 905 900 578 583 61%/39% 61%/39% 103 250 109 244 358 131 341 148 282 82 280 84 162 115 170 107
Anabaena sp. X59559 912 930 577 559 61%/39% 62%/38% 132 257 135 254 332 137 330 139 263 70 264 69 185 113 201 97
Aquifex aeolicus AE000709 AE000751 994 1084 593 503 63%/37% 68%/32% 74 239 92 221 429 135 450 114 379 89 391 77 112 130 151 91
Aquifex pyrophilus M83548 989 1060 575 504 63%/37% 68%/32% 75 242 88 229 425 136 442 119 377 77 380 74 112 120 150 82
Arthrobacter globiformis M23411 940 970 591 561 61%/39% 63%/37% 105 242 120 227 372 137 365 144 288 76 289 75 175 136 196 115
Azorhizobium caulinodans D11342 904 938 563 529 62%/38% 64%/36% 115 240 130 225 343 127 339 131 276 79 274 81 170 117 195 92
Bacillus anthracis X55059 864 872 558 550 61%/39% 61%/39% 131 234 136 229 305 127 300 132 248 77 245 80 180 120 191 109
Bacillus cereus X55060 898 904 542 536 62%/38% 63%/37% 136 232 140 228 320 122 312 130 256 70 247 79 186 118 205 99
Bacillus halodurans AB013373 952 980 601 573 61%/39% 63%/37% 134 254 143 245 351 136 347 140 278 81 279 80 189 130 211 108
Bacillus subtilis K00637 956 986 596 566 62%/38% 64%/36% 136 247 135 248 354 136 358 132 281 84 292 73 185 129 201 113
Bacteroides fragilis M61006 942 958 594 578 61%/39% 62%/38% 156 249 168 237 320 126 311 135 256 73 248 81 210 146 231 125
Bartonella bacilliformis Z11683 870 884 529 515 62%/38% 63%/37% 122 221 131 212 321 116 311 126 256 72 254 74 171 120 188 103
Bartonella henselae M73229 876 874 536 538 62%/38% 62%/38% 120 226 125 221 326 120 312 134 259 71 254 76 171 119 183 107
Bartonella quintana M11927 907 936 585 556 61%/39% 63%/37% 125 240 138 227 336 129 330 135 264 83 266 81 182 133 202 113
Beggiatoa sp. 1401-13 L40997 907 904 552 555 62%/38% 62%/38% 142 245 137 250 318 127 315 130 247 67 240 74 200 113 212 101
Bordetella bronchiseptica U04948 946 944 586 588 62%/38% 62%/38% 127 251 126 252 355 135 346 144 279 84 273 90 185 116 199 102
Bordetella parapertussis U04949 908 922 550 536 62%/38% 63%/37% 124 239 127 236 338 127 334 131 271 76 266 81 175 108 195 88
Bordetella pertussis U04950 908 910 550 548 62%/38% 62%/38% 123 238 126 235 341 127 329 139 268 76 263 81 176 109 192 93
Borrelia burgdorferi M88329 954 970 583 567 62%/38% 63%/37% 179 268 189 258 306 130 296 140 225 56 216 65 244 129 269 104
Borrelia hermsii U42292 949 966 574 557 62%/38% 63%/37% 171 269 184 256 310 130 299 141 233 53 221 65 235 122 262 95
Brachyspira hyodysenteriae U23035 913 892 550 571 62%/38% 61%/39% 149 248 147 250 316 124 299 141 242 63 230 75 206 115 216 105
Bradyrhizobium japonicum Z35330 914 944 576 546 61%/39% 63%/37% 119 243 130 232 345 122 342 125 277 84 276 85 173 127 196 104
Brevinema andersonii L31543 889 888 554 555 62%/38% 62%/38% 123 254 131 246 324 130 313 141 254 60 246 68 188 110 198 100
Brucella melitensis L26166 860 868 542 534 61%/39% 62%/38% 110 225 122 213 327 125 312 140 260 73 258 75 163 119 176 106
Buchnera sp. APS AP000398 904 892 556 568 62%/38% 61%/39% 154 266 154 266 305 109 292 122 247 71 236 82 198 110 210 98
Burkholderia mallei S55008 832 826 508 514 62%/38% 62%/38% 118 223 112 229 312 121 301 132 242 66 235 73 160 98 178 80
Burkholderia sp. U37342 921 930 592 583 61%/39% 61%/39% 125 253 128 250 345 142 337 150 272 82 271 83 179 115 194 100
Campylobacter jejuni Z29326 938 924 575 589 62%/38% 61%/39% 171 246 159 258 304 125 303 126 244 79 238 85 219 125 224 120
Campylobacter sputorum X67775 910 1040 784 654 54%/46% 61%/39% 182 354 228 308 282 134 292 124 231 87 222 96 215 209 298 126
Chlamydia muridarum AE002280 964 970 586 580 62%/38% 63%/37% 157 244 162 239 333 137 323 147 252 75 251 76 222 130 234 118
Chlamydia trachomatis U68443 964 974 590 580 62%/38% 63%/37% 156 245 160 241 335 137 327 145 252 73 251 74 221 135 236 120
Chlamydophila pneumoniae L06108 966 968 588 586 62%/38% 62%/38% 172 248 183 237 319 133 301 151 246 70 243 73 229 137 241 125
Chlamydophila psittaci U68447 960 968 592 584 62%/38% 62%/38% 166 245 173 238 323 131 311 143 248 76 255 69 223 140 229 134
Chlorobium vibrioforme M62791 919 944 584 559 61%/39% 63%/37% 145 254 150 249 326 130 322 134 259 73 262 70 189 127 210 106
Chlorogloeopsis sp. PCC 7518 X68780 912 904 570 578 62%/38% 61%/39% 129 259 128 260 336 145 324 157 269 67 266 70 178 99 186 91
Chromohalobacter marismortui X87222 910 922 564 552 62%/38% 63%/37% 111 245 114 242 356 133 347 142 281 79 280 80 162 107 181 88
Citrobacter freundii M59291 903 882 554 575 62%/38% 61%/39% 126 242 124 244 333 130 317 146 260 72 249 83 184 110 192 102
Clostridium botulinum F L37593 895 872 556 579 62%/38% 60%/40% 137 246 129 254 321 126 307 140 248 66 246 68 189 118 190 117
Clostridium difficile X73450 905 882 557 580 62%/38% 60%/40% 141 244 149 236 322 122 292 152 255 64 242 77 187 127 199 115
Clostridium innocuum M23732 945 948 593 590 61%/39% 62%/38% 157 270 162 265 331 133 312 152 258 72 249 81 199 118 225 92
Clostridium perfringens M69264 930 934 583 579 61%/39% 62%/38% 144 256 147 253 332 130 320 142 259 74 254 79 195 123 213 105
Clostridium tetani X74770 932 906 576 602 62%/38% 60%/40% 147 255 138 264 330 131 315 146 261 74 256 79 194 116 197 113
Comamonas testosteroni M11224 930 966 606 570 61%/39% 63%/37% 130 254 134 250 343 139 349 133 271 85 275 81 186 128 208 106
Corynebacterium diphtheriae X84248 915 916 567 566 62%/38% 62%/38% 107 220 111 216 358 146 347 157 273 66 260 79 177 135 198 114
Coxiella burnetii M21291 900 912 571 559 61%/39% 62%/38% 130 239 126 243 326 135 330 131 261 69 258 72 183 128 198 113
Cristispira CP1 U42638 934 924 557 567 63%/37% 62%/38% 182 258 189 251 290 115 273 132 219 57 208 68 243 127 254 116
Deferribacter thermophilus U75602 972 976 579 575 63%/37% 63%/37% 97 249 111 235 398 135 377 156 318 71 310 79 159 124 178 105
Deinococcus radiodurans M21413 924 950 578 552 62%/38% 63%/37% 127 238 136 229 344 139 339 144 274 77 275 76 179 124 200 103
Desulfovibrio desulfuricans M34113 951 990 599 560 61%/39% 64%/36% 131 256 140 247 356 132 355 133 282 82 285 79 182 129 210 101
Dichelobacter nodosus M35016 949 918 580 611 62%/38% 60%/40% 149 261 138 272 331 134 321 144 258 72 248 82 211 113 211 113
Edwardsiella tarda AF015259 884 868 544 560 62%/38% 61%/39% 129 237 125 241 322 130 309 143 253 68 251 70 180 109 183 106
Enterococcus faecalis Y18293 896 902 553 547 62%/38% 62%/38% 135 230 130 235 320 119 321 118 260 83 261 82 181 121 190 112
Enterococcus faecium AF070223 935 940 575 570 62%/38% 62%/38% 149 241 146 244 329 123 324 128 264 86 262 88 193 125 208 110
environ.Eubacteria clone W15 NPA 895 915 538 518 62%/38% 64%/36% 188 222 175 235 274 118 282 110 216 65 215 66 217 133 243 107
Epulopiscium sp. M99572 893 862 540 571 62%/38% 60%/40% 157 249 141 265 308 119 290 137 234 65 233 66 194 107 198 103
Erysipelothrix rhusiopathiae M23728 917 912 563 568 62%/38% 62%/38% 152 259 154 257 318 131 302 147 244 59 238 65 203 114 218 99
Escherichia coli J01695 956 960 586 582 62%/38% 62%/38% 136 253 143 246 351 136 337 150 273 79 271 81 196 118 209 105
Eubacterium brachy Z36272 909 946 591 554 61%/39% 63%/37% 143 264 148 259 322 132 325 129 250 69 252 67 194 126 221 99
Francisella tularensis Z21931 936 928 585 593 62%/38% 61%/39% 143 256 151 248 332 138 313 157 247 71 242 76 214 120 222 112
Frankia sp. M55343 930 954 582 558 62%/38% 63%/37% 92 236 98 230 385 142 379 148 309 78 313 74 144 126 164 106
Fusobacterium necrophorum X74408 912 928 587 571 61%/39% 62%/38% 150 248 147 251 320 131 317 134 245 79 248 76 197 129 216 110
Fusobacterium nucleatum subsp. nucleatum M58683 923 910 571 584 62%/38% 61%/39% 162 249 163 248 310 127 292 145 234 65 223 76 217 130 232 115
Gemmata obscuriglobus X56305 875 890 577 562 60%/40% 61%/39% 118 244 112 250 331 147 333 145 270 81 276 75 156 105 169 92
Geotoga subterranea L10659 935 934 593 594 61%/39% 61%/39% 141 279 135 285 346 145 332 159 269 65 273 61 179 104 194 89
Gluconacetobacter liquefaciens X75617 918 944 568 542 62%/38% 64%/36% 118 232 113 237 353 142 359 136 269 74 275 68 178 120 197 101
Haemobartonella felis U95297 851 854 526 523 62%/38% 62%/38% 165 232 159 238 260 101 268 93 206 55 196 65 220 138 231 127
Haemophilus influenzae X87977 882 922 559 519 61%/39% 64%/36% 138 236 149 225 312 145 312 145 234 63 234 63 198 115 227 86
Haemophilus influenzae (operons A-F) U32741 U32744 U32755 U32847 U32697 U32708 940 980 599 559 61%/39% 64%/36% 150 251 157 244 331 154 333 152 246 69 249 66 213 125 241 97
Halomonas halodenitrificans L04942 947 918 579 608 62%/38% 60%/40% 123 254 126 251 358 129 333 154 285 79 280 84 181 117 179 119
Helicobacter pylori M88157 898 872 546 572 62%/38% 60%/40% 149 237 148 238 308 110 288 130 243 67 222 88 198 132 214 116
Heliobacterium chlorum M11212 939 922 573 590 62%/38% 61%/39% 119 250 114 255 367 135 347 155 284 82 283 83 169 106 178 97
Holophaga foetida X77215 939 940 561 560 63%/37% 63%/37% 118 244 122 240 361 137 348 150 275 61 263 73 185 119 207 97
Isosphaera pallida X64372 885 888 553 550 62%/38% 62%/38% 95 225 91 229 369 134 353 150 296 83 296 83 125 111 148 88
Klebsiella pneumoniae X80684 889 888 554 555 62%/38% 62%/38% 122 230 121 231 329 134 323 140 261 84 264 81 177 106 180 103
Lactobacillus acidophilus M58802 928 968 600 560 61%/39% 63%/37% 144 253 154 243 329 133 330 132 271 82 267 86 184 132 217 99
Lactococcus lactis subsp. lactis AE006456 952 992 599 559 61%/39% 64%/36% 153 258 154 257 335 130 342 123 257 76 267 66 207 135 229 113
Legionella pneumophila M59157 908 902 593 599 60%/40% 60%/40% 140 248 142 246 322 153 309 166 240 80 239 81 206 112 212 106
Leptonema illini M88719 939 946 587 580 62%/38% 62%/38% 130 261 131 260 350 128 342 136 278 89 277 90 181 109 196 94
Leptospira interrogans X17547 926 952 582 556 61%/39% 63%/37% 136 257 151 242 335 121 325 131 262 80 260 82 193 124 216 101
Leptospirillum ferriphilum AF356830 928 930 594 592 61%/39% 61%/39% 122 254 119 257 359 154 346 167 288 85 288 85 159 101 177 83
Listeria monocytogenes M58822 925 908 578 595 62%/38% 60%/40% 140 243 136 247 333 126 318 141 265 77 259 83 187 132 195 124
Mesorhizobium loti AP003001 904 928 578 554 61%/39% 63%/37% 115 240 125 230 345 130 339 136 274 84 280 78 170 124 184 110
Methylobacterium sp. Z23160 890 880 547 557 62%/38% 61%/39% 109 224 113 220 345 127 327 145 274 75 267 82 162 121 173 110
Methylococcus capsulatus X72771 915 906 557 566 62%/38% 62%/38% 118 244 119 243 347 135 334 148 269 67 262 74 181 111 191 101
Micrococcus luteus M38242 910 890 582 602 61%/39% 60%/40% 109 235 108 236 351 137 337 151 279 76 279 76 171 134 166 139
Microcystis aeruginosa U03402 Z28699 868 832 543 579 62%/38% 59%/41% 116 237 111 242 327 131 305 153 263 69 245 87 162 106 171 97
Mycobacterium avium X52918 900 934 560 526 62%/38% 64%/36% 96 225 120 201 364 132 347 149 275 70 276 69 165 133 191 107
Mycobacterium leprae X56657 952 974 596 574 61%/39% 63%/37% 109 235 128 216 375 138 359 154 286 79 286 79 182 144 201 125
Mycobacterium tuberculosis X52917 897 944 567 520 61%/39% 64%/36% 97 224 118 203 362 140 354 148 273 76 283 66 165 127 189 103
Mycoplasma capricolum X00921 936 894 587 629 61%/39% 59%/41% 164 266 162 268 314 118 285 147 239 64 224 79 219 139 223 135
Mycoplasma gallisepticum M22441 932 944 587 575 61%/39% 62%/38% 179 259 181 257 293 121 291 123 224 66 220 70 236 141 252 125
Mycoplasma genitalium U39694 930 926 589 593 61%/39% 61%/39% 178 264 187 255 289 120 276 133 218 66 213 71 245 139 250 134
Mycoplasma hyopneumoniae Y00149 942 958 595 579 61%/39% 62%/38% 190 275 197 268 287 113 282 118 228 74 217 85 237 133 262 108
Mycoplasma mycoides M23943 852 836 547 563 61%/39% 60%/40% 155 244 150 249 278 114 268 124 221 57 203 75 198 132 215 115
Mycoplasma pneumoniae M29061 898 872 563 589 61%/39% 60%/40% 173 253 170 256 282 114 266 130 212 60 206 66 231 136 230 137
Myxococcus xanthus M34114 947 972 592 567 62%/38% 63%/37% 123 261 135 249 362 126 351 137 292 80 287 85 170 125 199 96
Neisseria gonorrhoeae X07714 936 968 608 576 61%/39% 63%/37% 131 249 138 242 347 145 346 146 267 90 275 82 191 124 209 106
Neisseria meningitidis AE002364 936 950 608 594 61%/39% 62%/38% 138 252 139 251 340 142 336 146 266 89 268 87 192 125 207 110
Nocardia asteroides X80606 908 934 561 535 62%/38% 64%/36% 103 230 114 219 361 136 353 144 284 75 283 76 160 120 184 96
Oscillatoria agardhii X84811 896 886 567 577 61%/39% 61%/39% 128 259 128 259 335 136 315 156 261 70 263 68 172 102 180 94
Pasteurella multocida M35018 924 918 576 582 62%/38% 61%/39% 146 246 144 248 325 143 315 153 247 66 242 71 206 121 217 110
Petrotoga miotherma L10657 811 786 516 541 61%/39% 59%/41% 129 244 118 255 293 138 275 156 224 50 222 52 165 84 171 78
Pirellula marina X62912 890 910 582 562 60%/40% 62%/38% 119 239 127 231 341 133 328 146 254 84 258 80 176 126 197 105
Pirellula staleyi M34126 935 924 586 597 61%/39% 61%/39% 130 246 138 238 350 132 324 158 275 73 259 89 180 135 203 112
Planctomycetaceae Schlesner 670 X81948 921 950 569 540 62%/38% 64%/36% 127 238 136 229 344 136 339 141 276 69 274 71 174 126 201 99
Plesiomonas shigelloides X74688 901 888 553 566 62%/38% 61%/39% 133 237 130 240 327 132 314 145 256 67 251 72 185 117 193 109
Pleurocapsa sp. X78681 892 900 569 561 61%/39% 62%/38% 138 245 132 251 317 132 318 131 250 72 246 76 187 120 204 103
Porphyromonas gingivalis L16492 911 932 556 535 62%/38% 64%/36% 142 235 142 235 318 125 324 119 259 75 253 81 192 121 213 100
Proteus vulgaris X07652 954 970 589 573 62%/38% 63%/37% 146 256 150 252 340 138 335 143 264 72 261 75 204 123 224 103
Pseudomonas aeruginosa M34133 914 912 570 572 62%/38% 61%/39% 131 248 134 245 334 136 322 148 264 70 256 78 185 116 200 101
Pseudomonas putida D84020 951 950 576 577 62%/38% 62%/38% 139 247 143 243 345 131 332 144 266 78 262 82 201 120 213 108
Pseudomonas sp. U37339 913 902 556 567 62%/38% 61%/39% 128 239 128 239 336 132 323 145 263 70 259 74 186 115 192 109
Psychrobacter pacificensis AB016054 946 926 590 610 62%/38% 60%/40% 143 262 141 264 342 130 322 150 260 75 254 81 201 123 209 115
Rhodobium orientis D30792 871 884 537 524 62%/38% 63%/37% 111 224 119 216 333 120 323 130 265 78 267 76 162 115 175 102
Rhodoblastus acidophilus M34128 886 934 568 520 61%/39% 64%/36% 125 239 142 222 326 123 325 124 259 82 250 91 176 124 217 83
Rhodococcus erythropolis AF001265 932 930 587 589 61%/39% 61%/39% 107 238 108 237 369 140 357 152 289 81 295 75 167 128 170 125
Rickettsia bellii U11014 926 944 575 557 62%/38% 63%/37% 146 251 155 242 323 124 317 130 254 67 250 71 203 133 222 114
Rickettsia prowazekii M21789 926 940 576 562 62%/38% 63%/37% 146 254 155 245 323 122 315 130 249 65 251 63 208 135 219 124
Rickettsia rickettsii L36217 896 904 544 536 62%/38% 63%/37% 145 238 148 235 309 120 304 125 245 62 244 63 197 124 208 113
Salmonella typhimurium X80681 942 962 591 571 61%/39% 63%/37% 135 255 146 244 346 138 335 149 269 80 266 83 192 118 215 95
Serratia marcescens M59160 928 928 583 583 61%/39% 61%/39% 134 251 140 245 336 136 324 148 266 76 260 82 192 120 204 108
Shewanella putrefaciens X81623 948 952 586 582 62%/38% 62%/38% 128 251 127 252 353 138 349 142 275 75 276 74 192 122 200 114
Shigella dysenteriae X96966 910 928 577 559 61%/39% 62%/38% 132 243 136 239 332 140 328 144 259 82 262 79 187 112 202 97
Spirochaeta aurantia M57740 939 934 581 586 62%/38% 61%/39% 136 253 146 243 344 139 321 162 266 59 257 68 193 130 210 113
Staphylococcus aureus L36472 950 982 605 573 61%/39% 63%/37% 162 255 174 243 321 131 317 135 258 84 257 85 209 135 234 110
Streptobacillus moniliformis Z35305 912 936 573 549 61%/39% 63%/37% 173 262 180 255 293 134 288 139 223 58 220 61 223 119 248 94
Streptococcus mutans X58303 797 808 510 499 61%/39% 62%/38% 125 215 126 214 278 116 278 116 222 68 225 65 172 111 179 104
Streptococcus pneumoniae X58312 796 794 494 496 62%/38% 62%/38% 118 205 119 204 286 111 278 119 224 67 223 68 168 111 174 105
Streptococcus pyogenes X59029 783 772 495 506 61%/39% 60%/40% 122 213 109 226 281 113 277 117 219 65 211 73 161 104 175 90
Streptomyces acidiscabies D63865 936 974 594 556 61%/39% 64%/36% 105 239 113 231 373 143 374 142 301 85 304 82 157 127 183 101
Streptomyces albidoflavus Z76676 910 916 565 559 62%/38% 62%/38% 100 231 101 230 365 139 357 147 296 75 289 82 149 120 169 100
Streptomyces albus X53163 755 786 485 454 61%/39% 63%/37% 82 188 94 176 299 127 299 127 245 62 239 68 129 108 154 83
Streptomyces ambofaciens M27245 938 950 590 578 61%/39% 62%/38% 105 237 103 239 373 142 372 143 304 84 305 83 156 127 170 113
Streptomyces bikiniensis X79851 934 936 583 581 62%/38% 62%/38% 106 236 100 242 371 141 368 144 299 84 295 88 158 122 173 107
Streptomyces bluensis X79324 936 964 584 556 62%/38% 63%/37% 105 235 106 234 372 144 376 140 301 80 303 78 158 125 179 104
Streptomyces bottropensis D63868 936 956 595 575 61%/39% 62%/38% 109 239 104 244 369 144 374 139 298 85 302 81 160 127 176 111
Streptomyces brasiliensis X53162 748 772 490 466 60%/40% 62%/38% 83 191 89 185 297 128 297 128 244 66 240 70 124 105 146 83
Streptomyces caelestis X80824 936 944 582 574 62%/38% 62%/38% 106 235 108 233 371 142 364 149 304 81 302 83 155 124 170 109
Streptomyces coelicolor Y00411 933 956 595 572 61%/39% 63%/37% 106 240 109 237 368 142 369 141 304 86 303 87 155 127 175 107
Streptomyces diastaticus X53161 716 754 473 435 60%/40% 63%/37% 82 183 91 174 282 123 286 119 236 61 235 62 116 106 142 80
Streptomyces diastatochromogenes D63867 936 962 595 569 61%/39% 63%/37% 109 239 107 241 369 145 374 140 297 85 298 84 161 126 183 104
Streptomyces espinosus X80826 934 990 584 528 62%/38% 65%/35% 102 231 112 221 375 145 383 137 308 93 317 84 149 115 178 86
Streptomyces eurythermus D63870 934 950 597 581 61%/39% 62%/38% 107 239 109 237 370 144 366 148 300 85 299 86 157 129 176 110
Streptomyces felleus Z76681 910 916 565 559 62%/38% 62%/38% 100 231 101 230 365 139 357 147 296 75 289 82 149 120 169 100
Streptomyces galbus X79325 934 950 583 567 62%/38% 63%/37% 110 237 112 235 364 141 363 142 294 79 296 77 166 126 179 113
Streptomyces glaucescens X79322 938 936 581 583 62%/38% 62%/38% 107 236 107 236 371 139 361 149 300 84 298 86 160 122 170 112
Streptomyces gougerotii Z76687 912 922 564 554 62%/38% 62%/38% 101 232 97 236 365 138 364 139 297 75 296 76 149 119 165 103
Streptomyces griseus X61478 936 962 592 566 61%/39% 63%/37% 108 238 118 228 371 140 363 148 294 85 296 83 163 129 185 107
Streptomyces hygroscopicus X79853 934 948 583 569 62%/38% 62%/38% 109 237 110 236 367 140 364 143 297 81 299 79 161 125 175 111
Streptomyces intermedius Z76686 910 920 564 554 62%/38% 62%/38% 102 232 97 237 363 138 363 138 296 75 295 76 149 119 165 103
Streptomyces lavendulae X53173 718 728 465 455 61%/39% 62%/38% 84 182 81 185 281 119 283 117 228 63 230 61 125 101 134 92
Streptomyces limosus Z76679 910 916 565 559 62%/38% 62%/38% 100 231 101 230 365 139 357 147 296 75 289 82 149 120 169 100
Streptomyces lincolnensis X79854 936 952 583 567 62%/38% 63%/37% 108 237 107 238 369 140 369 140 299 81 293 87 160 125 183 102
Streptomyces macrosporus Z68099 918 918 564 564 62%/38% 62%/38% 101 226 96 231 369 146 363 152 302 76 304 74 146 116 155 107
Streptomyces mashuensis X79323 932 966 586 552 61%/39% 64%/36% 109 236 115 230 368 142 368 142 299 83 303 79 156 125 180 101
Streptomyces megasporus Z68100 927 946 561 542 62%/38% 64%/36% 94 223 96 221 381 144 377 148 313 78 312 79 139 116 161 94
Streptomyces neyagawaensis D63869 936 964 595 567 61%/39% 63%/37% 107 238 111 234 371 146 371 146 299 85 302 82 159 126 180 105
Streptomyces nodosus AF114033 934 968 594 560 61%/39% 63%/37% 103 236 106 233 373 144 378 139 304 86 313 77 154 128 171 111
Streptomyces odorifer Z76682 912 916 563 559 62%/38% 62%/38% 100 231 101 230 366 138 357 147 297 74 289 82 149 120 169 100
Streptomyces ornatus X79326 932 956 585 561 61%/39% 63%/37% 106 239 118 227 371 139 360 150 293 81 294 80 162 126 184 104
Streptomyces pseudogriseolus X80827 934 956 582 560 62%/38% 63%/37% 105 237 103 239 371 140 375 136 302 81 305 78 156 124 173 107
Streptomyces purpureus X53170 716 716 469 469 60%/40% 60%/40% 86 184 83 187 282 120 275 127 226 62 219 69 122 103 139 86
Streptomyces rimosus X62884 934 988 595 541 61%/39% 65%/35% 106 234 117 223 370 145 377 138 303 87 307 83 155 129 187 97
Streptomyces rutgersensis Z76688 912 922 564 554 62%/38% 62%/38% 101 232 97 236 365 138 364 139 297 74 296 75 149 120 165 104
Streptomyces sampsonii D63871 936 958 595 573 61%/39% 63%/37% 102 238 107 233 376 143 372 147 304 83 300 87 154 131 179 106
Streptomyces scabiei D63862 948 962 582 568 62%/38% 63%/37% 115 235 107 243 373 140 374 139 298 83 298 83 162 124 183 103
Streptomyces setonii D63872 938 952 594 580 61%/39% 62%/38% 106 241 105 242 372 139 371 140 297 85 300 82 163 129 176 116
Streptomyces sp. D63866 936 978 594 552 61%/39% 64%/36% 105 239 116 228 372 142 373 141 298 84 302 80 161 129 187 103
Streptomyces subrutilus X80825 934 950 582 566 62%/38% 63%/37% 109 239 107 241 367 139 368 138 295 80 295 80 163 124 180 107
Streptomyces tendae D63873 936 956 594 574 61%/39% 62%/38% 104 240 106 238 373 140 372 141 306 85 310 81 153 129 168 114
Streptomyces thermodiastaticus Z68101 915 902 568 581 62%/38% 61%/39% 102 230 102 230 364 141 349 156 300 77 295 82 149 120 156 113
Streptomyces thermolineatus Z68097 917 922 564 559 62%/38% 62%/38% 103 227 106 224 366 141 355 152 298 79 291 86 150 117 170 97
Streptomyces thermoviolaceus Z68096 917 912 566 571 62%/38% 61%/39% 102 230 102 230 367 140 354 153 298 79 294 83 150 117 162 105
Streptomyces thermovulgaris Z68098 933 926 553 560 63%/37% 62%/38% 104 223 99 228 377 137 364 150 304 73 303 74 148 120 160 108
Synechococcus sp. PCC 6301 X03538 906 926 582 562 61%/39% 62%/38% 119 251 130 240 341 135 333 143 270 80 263 87 176 116 200 92
Synechocystis sp. PCC 6803 D64000 D90916 912 920 577 569 61%/39% 62%/38% 132 252 130 254 334 134 330 138 265 70 260 75 181 121 200 102
Thermomicrobium roseum M34115 941 966 581 556 62%/38% 63%/37% 73 222 78 217 409 176 405 180 327 89 348 68 132 94 135 91
Thermotoga maritima M21774 968 1016 594 546 62%/38% 65%/35% 80 247 88 239 416 148 420 144 353 77 359 71 119 122 149 92
Thermus aquaticus L09663 921 930 549 540 63%/37% 63%/37% 87 226 87 226 386 145 378 153 318 77 323 72 130 101 142 89
Thermus thermophilus X07998 936 970 579 545 62%/38% 64%/36% 80 230 80 230 398 146 405 139 333 92 347 78 125 111 138 98
Treponema pallidum (rRNA A) AE001204 956 960 593 589 62%/38% 62%/38% 121 254 138 237 363 154 342 175 273 63 270 66 199 122 210 111
Tropheryma whipplei X99636 936 942 586 580 61%/39% 62%/38% 111 247 114 244 367 136 357 146 292 73 291 74 166 130 180 116
Ureaplasma urealyticum AE002112 936 946 609 599 61%/39% 61%/39% 182 268 190 260 290 118 283 125 224 68 220 72 240 155 253 142
Vibrio cholerae X76337 936 960 600 576 61%/39% 63%/38% 140 252 145 247 337 148 335 150 259 82 261 80 200 118 219 99
Vibrio parahaemolyticus X56580 921 890 558 589 62%/38% 60%/40% 141 238 136 243 328 138 309 157 260 66 243 83 192 116 202 106
Xanthomonas albilineans X95918 931 933 567 565 62%/38% 62%/38% 128 247 143 232 345 136 323 158 273 71 265 79 185 113 202 96
Xanthomonas campestris NPA 909 922 575 562 61%/39% 62%/38% 123 246 134 235 338 137 327 148 265 75 262 78 183 117 199 101
Xylella fastidiosa AE003861 950 976 595 569 61%/39% 63%/37% 129 256 155 230 351 144 333 162 267 70 262 75 203 125 226 102
Yersinia pestis L37604 902 930 565 537 61%/39% 63%/37% 129 242 135 236 328 137 330 135 257 75 264 68 188 111 201 98
Yersinia pseudotuberculosis Z21939 923 938 554 539 62%/38% 64%/36% 130 242 147 225 336 132 322 146 266 68 265 69 191 112 204 99
Eukaryotic Chloroplast   Paired Unpaired Ratio1 A2 G C U
C M C M C M PC UPC PM UPM PC UPC PM UPM PC UPC PM UPM PC UPC PM UPM
Apodanthes sp. NPA 914 960 588 542 61%/39% 64%/36% 140 239 144 235 334 130 336 128 249 79 257 71 191 140 223 108
Astasia longa X14386 932 952 588 568 61%/39% 63%/37% 203 266 211 258 265 117 265 117 192 42 178 56 272 163 298 137
Babesia bovis U06105 861 886 587 562 59%/41% 61%/39% 291 271 287 275 153 87 156 84 103 57 108 52 314 172 335 151
Chlamydomonas humicola AF374186 799 786 526 539 60%/40% 59%/41% 137 228 131 234 270 119 262 127 223 64 216 71 169 115 177 107
Chlamydomonas reinhardtii J01395 880 896 594 578 60%/40% 61%/39% 136 246 142 240 312 139 306 145 251 83 249 85 181 126 199 108
Chlorella vulgaris AB001684 912 948 579 543 61%/39% 64%/36% 145 250 154 241 321 136 320 137 258 73 260 71 188 120 214 94
Corethron criophilum NPA 900 922 577 555 61%/39% 62%/38% 176 234 166 244 294 128 295 127 224 77 230 71 206 138 231 113
Cryptomonas sp. X56805 898 930 595 563 60%/40% 62%/38% 164 250 162 252 300 132 303 129 231 80 235 76 203 133 230 106
Cyanidium caldarium X52985 900 892 592 600 60%/40% 60%/40% 169 251 151 269 299 123 295 127 224 76 232 68 208 142 214 136
Cyanophora paradoxa X81840 904 914 600 590 60%/40% 61%/39% 138 258 132 264 323 137 325 135 255 74 256 73 188 131 201 118
Cynomorium coccineum U67743 890 896 590 584 60%/40% 61%/39% 145 252 141 256 312 129 307 134 247 82 247 82 186 127 201 112
Cytinus ruber U47845 904 870 593 627 60%/40% 58%/42% 160 258 137 281 305 122 298 129 241 80 238 83 198 133 197 134
Emiliania huxleyi X82156 892 914 591 569 60%/40% 62%/38% 157 238 150 245 303 128 307 124 240 79 244 75 192 146 213 125
Euglena gracilis X12890 V00159 906 908 585 583 61%/39% 61%/39% 168 257 177 248 291 130 277 144 216 65 204 77 231 133 250 114
Glaucocystis nostochinearum X82496 915 942 597 570 61%/39% 62%/38% 147 247 147 247 327 139 324 142 246 80 256 70 195 131 215 111
Gloeochaete wittrockiana X82495 913 954 599 558 60%/40% 63%/37% 162 254 161 255 305 137 316 126 233 70 242 61 213 138 235 116
Heterosigma akashiwo M82860 912 914 625 623 59%/41% 59%/41% 185 249 166 268 285 136 291 130 219 85 228 76 223 155 229 149
Hydnora africana U67745 896 894 608 610 60%/40% 59%/41% 204 283 185 302 258 114 262 110 206 71 211 66 228 140 236 132
Marchantia polymorpha X04465 890 912 606 584 59%/41% 61%/39% 136 244 126 254 323 148 330 141 251 100 267 84 180 114 189 105
Mitrastema yamamotoi U67742 866 884 599 581 59%/41% 60%/40% 176 262 170 268 265 126 272 119 213 74 211 76 212 137 231 118
Nicotiana tabacum V00165 898 916 588 570 60%/40% 62%/38% 128 235 127 236 334 149 331 152 264 94 278 80 172 110 180 102
Palmaria palmata Z18289 888 928 598 558 60%/40% 62%/38% 151 246 146 251 306 130 318 118 247 89 253 83 184 133 211 106
Pilostyles thurberi U67741 828 908 636 556 57%/43% 62%/38% 230 254 249 235 191 99 205 85 137 58 131 64 270 225 323 172
Plasmodium falciparum (plastid-like) X57167 X95275 864 870 562 556 61%/39% 61%/39% 298 288 289 297 132 66 146 52 104 34 91 47 330 174 344 160
Plasmodium vivax AF040974 573 570 376 379 60%/40% 60%/40% 202 194 198 198 89 41 87 43 71 32 65 38 211 109 220 100
Polytoma obtusum AF374187 808 780 521 549 61%/39% 59%/41% 170 239 159 250 247 109 231 125 195 59 186 68 196 114 204 106
Polytoma oviforme AF374188 786 818 525 493 60%/40% 62%/38% 146 238 153 231 254 118 256 116 203 61 202 62 183 108 207 84
Polytoma uvella AF374189 950 1010 636 576 60%/40% 64%/36% 200 290 214 276 285 126 291 120 221 69 216 74 244 151 289 106
Pylaiella littoralis X14873 904 914 601 591 60%/40% 61%/39% 187 250 178 259 280 133 279 134 207 84 214 77 230 134 243 121
Ricinus communis L37580 877 860 546 563 62%/38% 60%/40% 112 237 104 245 329 137 326 140 273 69 267 75 163 103 163 103
Skeletonema pseudocostatum X82155 899 910 586 575 61%/39% 61%/39% 179 238 166 251 289 125 289 125 222 76 224 74 209 147 231 125
Toxoplasma gondii U87145 906 910 594 590 60%/40% 61%/39% 250 273 229 294 219 97 226 90 159 57 156 60 278 167 299 146
Zea mays Z00028 904 922 586 568 61%/39% 62%/38% 123 252 123 252 335 141 338 138 277 79 279 77 169 114 182 101
Eukaryotic Mitochondrion   Paired Unpaired Ratio1 A2 G C U
C M C M C M PC UPC PM UPM PC UPC PM UPM PC UPC PM UPM PC UPC PM UPM
Acanthamoeba castellanii U03732 892 922 668 638 57%/43% 59%/41% 223 277 216 284 233 125 245 113 156 70 172 54 280 196 289 187
Afrixalus fornasini NPA 482 482 422 422 53%/47% 53%/47% 122 193 118 197 123 48 123 48 115 88 103 100 122 93 138 77
Albinaria caerulea X83390 410 452 349 307 54%/46% 60%/40% 140 155 140 155 75 42 86 31 56 42 60 38 139 110 166 83
Alligator mississippiensis L28074 480 472 459 467 51%/49% 50%/50% 101 218 88 231 134 57 148 43 141 110 132 119 104 74 104 74
Amblysomus hottentotus M95108 514 540 438 412 54%/46% 57%/43% 137 210 151 196 119 42 119 42 107 80 98 89 151 106 172 85
Anas platyrhynchos L16770 514 514 471 471 52%/48% 52%/48% 111 201 104 208 151 56 153 54 144 135 134 145 108 79 123 64
Anopheles gambiae L20934 440 476 360 324 55%/45% 60%/41% 154 148 168 134 59 44 70 33 35 25 39 21 192 143 199 136
Anopheles quadrimaculatus L04272 440 502 354 292 55%/45% 63%/37% 157 152 184 125 56 40 67 29 34 25 36 23 193 137 215 115
Antilocapra americana M55540 532 514 426 444 56%/44% 54%/46% 125 218 116 227 140 38 141 37 129 89 109 109 138 81 148 71
Apis mellifera L06178 S51650 424 490 362 296 54%/46% 62%/38% 149 180 180 149 61 39 65 35 25 21 28 18 189 122 217 94
Artemia franciscana X69067 392 420 320 292 55%/45% 59%/41% 96 132 100 128 101 52 110 43 74 48 70 52 121 88 140 69
Ascaris suum X54253 374 430 327 271 53%/47% 61%/39% 104 120 126 98 81 52 89 44 39 25 47 17 150 130 168 112
Aspergillus nidulans J01393 844 866 593 571 59%/41% 60%/40% 234 266 226 274 193 106 207 92 150 59 151 58 267 162 282 147
Asterina pectinifera D16387 468 484 482 466 49%/51% 51%/49% 124 221 119 226 111 57 123 45 113 107 112 108 120 97 130 87
Balaenoptera musculus X72204 518 538 454 434 53%/47% 55%/45% 131 217 127 221 127 53 142 38 125 104 124 105 135 80 145 70
Bos taurus J01394 V00654 522 518 433 437 55%/45% 54%/46% 139 212 119 232 126 46 140 32 126 90 119 97 131 85 140 76
Bufo boreas boreas Thesis, Goebel A. 493 460 418 451 54%/46% 50%/50% 107 180 94 193 138 43 136 45 130 92 119 103 118 103 111 110
Bufo peltocephalus Thesis, Goebel A. 490 516 426 400 53%/47% 56%/44% 110 190 114 186 133 44 144 33 126 86 117 95 121 106 141 86
Caenorhabditis elegans X54252 378 434 319 263 54%/46% 62%/38% 116 134 137 113 72 43 80 35 45 23 47 21 145 119 170 94
Cafeteria roenbergensis AF193903 880 1014 782 648 53%/47% 61%/39% 231 330 269 292 219 147 238 128 139 80 157 62 291 225 350 166
Ceratophrys sp. Thesis, Goebel A. 482 460 426 448 53%/47% 51%/49% 110 196 90 216 133 48 140 41 128 95 126 97 111 87 104 94
Chlamydomonas eugametos AF008237 724 786 533 471 58%/42% 63%/37% 189 250 204 235 183 86 189 80 132 63 146 49 220 134 247 107
Chlamydomonas reinhardtii X54860 608 694 592 506 51%/49% 58%/42% 115 228 127 216 194 116 220 90 147 105 168 84 152 143 179 116
Chondrus crispus Z30950 Z47547 808 830 568 546 59%/41% 60%/40% 245 255 232 268 176 93 183 86 128 56 131 53 259 164 284 139
Chorthippus parallelus ESC X95574 424 492 370 302 53%/47% 62%/38% 113 134 152 95 83 50 94 39 51 29 53 27 177 157 193 141
Chorthippus parallelus NOR X95575 424 492 370 302 53%/47% 62%/38% 113 134 152 95 83 50 94 39 52 29 54 27 176 157 192 141
Chrysodidymus synuroideus NPA 948 956 658 650 59%/41% 60%/40% 262 276 252 286 213 113 226 100 152 62 143 71 321 207 335 193
Chrysodidymus synuroideus mg AF222718 930 968 649 611 59%/41% 61%/39% 249 277 258 268 207 116 226 97 149 63 144 68 325 193 340 178
Coscoroba coscoroba S76216 518 514 465 469 53%/47% 52%/48% 110 202 103 209 152 54 154 52 144 129 138 135 112 80 119 73
Coturnix coturnix X57245 502 488 469 483 52%/48% 50%/50% 115 215 100 230 137 42 144 35 141 122 126 137 109 90 118 81
Crithidia fasciculata X02548 136 350 476 262 22%/78% 57%/43% 46 191 128 109 17 50 47 20 13 36 22 27 60 199 153 106
Crossostoma lacustre M91245 518 544 433 407 54%/46% 57%/43% 103 189 105 187 158 64 167 55 144 101 143 102 113 79 129 63
Cygnus melancoryphus S76217 526 518 463 471 53%/47% 52%/48% 112 197 97 212 154 54 162 46 146 131 141 136 114 81 118 77
Cyprinus carpio X61010 504 480 447 471 53%/47% 50%/50% 103 206 87 222 150 54 153 51 144 112 139 117 107 75 101 81
Damaliscus pygargus M86499 524 508 429 445 55%/45% 53%/47% 134 206 114 226 131 49 140 40 132 98 125 105 127 76 129 74
Daphnia pulex Z15015 414 480 337 271 55%/45% 64%/36% 110 148 133 125 90 61 107 44 62 35 66 31 152 93 174 71
Dictyostelium discoideum D16466 770 858 781 693 50%/50% 55%/45% 192 381 206 367 204 162 223 143 150 68 166 52 224 170 263 131
Didelphis virginiana Z29573 514 526 437 425 54%/46% 55%/45% 140 225 140 225 116 41 123 34 108 80 108 80 150 91 155 86
Drosophila teissieri X54011 424 500 366 290 54%/46% 63%/37% 152 167 174 145 59 44 76 27 35 26 38 23 178 129 212 95
Drosophila virilis X05914 466 472 318 312 59%/41% 60%/40% 164 145 167 142 69 39 69 39 40 20 34 26 193 114 202 105
Drosophila yakuba X03240 424 506 365 283 54%/46% 64%/36% 152 167 175 144 59 44 78 25 35 25 39 21 178 129 214 93
Eleutherodactylus coqui NPA 448 434 427 441 51%/49% 50%/50% 105 193 94 204 117 42 123 36 111 107 110 108 115 85 107 93
Equus caballus X79547 510 470 465 505 52%/48% 48%/52% 132 226 106 252 125 47 129 43 121 114 108 127 132 78 127 83
Farfantepenaeus notialis X84357 448 500 410 358 52%/48% 58%/42% 118 186 135 169 108 68 115 61 64 41 72 33 158 115 178 95
Felis catus U20753 504 448 456 512 53%/48% 47%/53% 127 220 91 256 125 47 133 39 115 112 117 110 137 77 107 107
Gallus gallus X52392 510 490 466 486 52%/48% 50%/50% 118 198 104 212 135 43 141 37 144 138 129 153 113 87 116 84
Glycine max M16859 900 1296 1090 694 45%/55% 65%/35% 141 360 210 291 317 293 438 172 243 210 337 116 199 227 311 115
Harpactes ardens U94810 464 492 493 465 48%/52% 51%/49% 93 213 99 207 138 52 147 43 131 128 130 129 102 100 116 86
Harpochytrium sp. JEL94 AY182005 718 818 650 550 52%/48% 60%/40% 174 264 192 246 201 113 217 97 151 92 168 75 192 181 241 132
Herpetomonas megaseliae U01006 84 340 463 207 15%/85% 62%/38% 30 189 124 95 10 48 46 12 4 41 20 25 40 185 150 75
Homo sapiens J01415 532 516 422 438 56%/44% 54%/46% 130 185 116 199 134 47 142 39 137 116 126 127 131 74 132 73
Katharina tunicata U09810 412 495 469 386 47%/53% 56%/44% 132 211 156 187 72 46 91 27 60 63 64 59 148 149 184 113
Latimeria chalumnae Z21921 498 454 477 521 51%/49% 47%/53% 120 231 88 263 131 56 139 48 141 121 122 140 106 69 105 70
Leishmania tarentolae M10126 136 402 534 268 20%/80% 60%/40% 46 207 149 104 17 52 52 17 12 40 33 19 61 235 168 128
Locusta migratoria X80245 420 488 407 339 51%/49% 59%/41% 116 135 150 101 73 50 94 29 48 28 50 26 183 194 194 183
Loxodonta africana U60182 D50847 510 494 451 467 53%/47% 51%/49% 119 211 105 225 135 48 142 41 120 100 111 109 136 92 136 92
Lumbricus terrestris U24570 404 402 381 383 51%/49% 51%/49% 94 181 91 184 101 46 110 37 95 75 87 83 114 79 114 79
Lutreolina crassicaudata U33494 518 514 435 439 54%/46% 54%/46% 140 209 131 218 119 45 126 38 109 85 104 90 150 96 153 93
Macropus giganteus X86941 506 490 446 462 53%/47% 51%/49% 124 228 108 244 126 50 137 39 121 92 114 99 135 76 131 80
Magicicada tredecim NPA 408 444 319 283 56%/44% 61%/39% 122 145 149 118 69 42 73 38 43 23 41 25 174 109 181 102
Marchantia polymorpha M68292 884 1250 1090 724 45%/55% 63%/37% 157 398 233 322 296 232 392 136 226 194 308 112 205 266 317 154
Metridium senile S75445 612 664 526 474 54%/46% 58%/42% 122 227 132 217 187 114 200 101 138 58 147 49 165 127 185 107
Monosiga brevicollis AF538053 816 938 780 658 51%/49% 59%/41% 244 358 284 318 168 115 185 98 126 54 128 52 278 253 341 190
Mus musculus J01420 518 482 438 474 54%/46% 50%/50% 144 217 127 234 108 46 114 40 111 77 93 95 155 98 148 105
Muscardinus avellanarius X84384 524 512 432 444 55%/45% 54%/46% 140 194 125 209 122 48 131 39 123 79 107 95 139 111 149 101
Mytilus edulis M83756 450 588 495 357 48%/52% 62%/38% 123 186 149 160 104 110 145 69 71 54 94 31 152 145 200 97
Nephroselmis olivacea AF110138 894 934 615 575 59%/41% 62%/38% 175 259 167 267 278 134 300 112 214 85 214 85 227 137 253 111
Neurospora crassa L33367 722 1142 1150 730 39%/61% 61%/39% 189 426 283 332 183 226 288 121 134 158 209 83 216 340 362 194
Ochromonas danica AF287134 944 996 619 567 60%/40% 64%/36% 237 255 249 243 238 124 249 113 160 55 164 51 309 185 334 160
Oenothera berteriana X61277 894 1178 1006 722 47%/53% 62%/38% 138 340 170 308 314 274 419 169 242 198 333 107 200 194 256 138
Oncorhynchus mykiss L29771 516 512 428 432 55%/45% 54%/46% 101 184 93 192 159 56 163 52 155 104 138 121 101 84 118 67
Ornithorhynchus anatinus U33498 X83427 498 478 446 466 53%/47% 51%/49% 126 218 112 232 123 45 127 41 114 96 104 106 135 87 135 87
Pan troglodytes D38113 512 498 437 451 54%/46% 52%/48% 125 190 115 200 129 50 134 45 127 117 114 130 131 80 135 76
Paracentrotus lividus J04815 470 484 408 394 54%/46% 55%/45% 121 202 113 210 119 49 129 39 114 80 115 79 116 77 127 66
Paramecium tetraurelia K01751 773 1008 902 667 46%/54% 60%/40% 214 345 249 310 190 157 255 92 132 140 179 93 237 260 325 172
Pedinomonas minor AF116775 684 758 494 420 58%/42% 64%/36% 240 208 265 183 98 64 114 48 66 47 61 52 280 175 318 137
Penicillium chrysogenum Z23072 754 904 695 545 52%/48% 62%/38% 204 299 242 261 184 114 210 88 137 75 140 72 229 207 312 124
Petromyzon marinus U11880 480 450 420 450 53%/47% 50%/50% 115 186 95 206 124 44 130 38 130 104 116 118 111 86 109 88
Phalanger orientalis U33496 510 486 440 464 54%/46% 51%/49% 131 232 113 250 122 39 130 31 125 94 104 115 132 75 139 68
Phascogale tapoatafa U33497 522 552 435 405 55%/45% 58%/42% 113 198 121 190 146 62 155 53 124 81 124 81 139 94 152 81
Phoca vitulina X63726 502 468 459 493 52%/48% 49%/51% 131 224 98 257 120 46 136 30 116 113 111 118 135 76 123 88
Physarum polycephalum X75592 870 1142 991 719 47%/53% 61%/39% 184 374 267 291 243 175 304 114 188 136 220 104 255 306 351 210
Phytophthora infestans U17009 908 902 595 601 60%/40% 60%/40% 245 276 232 289 211 110 219 102 155 59 162 52 297 150 289 158
Pichia canadensis D49702 D31785 702 886 835 651 46%/54% 58%/42% 243 429 314 358 124 83 129 78 92 52 93 51 243 271 350 164
Podospora anserina X14734 766 1118 1013 661 43%/57% 63%/37% 198 381 294 285 195 181 265 111 137 139 192 84 236 312 367 181
Porphyra purpurea AF114794 834 840 573 567 59%/41% 60%/40% 206 273 201 278 214 95 219 90 170 71 169 72 244 134 251 127
Protopterus dolloi L42813 492 510 441 423 53%/47% 55%/45% 104 193 101 196 138 57 154 41 132 102 130 104 118 89 125 82
Prototheca wickerhamii X15435 940 1088 735 587 56%/44% 65%/35% 229 312 265 276 247 132 279 100 184 82 193 73 280 209 351 138
Puma concolor U33495 504 502 456 458 53%/48% 52%/48% 127 220 116 231 125 48 135 38 118 114 112 120 134 74 139 69
Pylaiella littoralis X14874 788 922 731 597 52%/48% 61%/39% 159 298 188 269 247 151 273 125 177 81 197 61 205 201 264 142
Rana catesbeiana X12841 498 520 439 417 53%/47% 55%/45% 116 175 121 170 136 51 139 48 124 95 114 105 122 118 146 94
Rattus norvegicus J01438 514 512 439 441 54%/46% 54%/46% 134 211 131 214 117 47 125 39 115 89 102 102 148 92 154 86
Reclinomonas americana AF007261 984 980 611 615 62%/38% 61%/39% 213 267 203 277 286 117 287 116 215 70 221 64 270 157 269 158
Rhizopus stolonifer NPA 829 878 601 552 58%/42% 61%/39% 180 269 190 259 242 117 249 110 196 68 201 63 211 147 238 120
Rhodomonas salina AF288090 876 890 607 593 59%/41% 60%/40% 287 259 270 276 162 97 175 84 120 55 121 54 307 196 324 179
Saccharomyces cerevisiae V00704 806 1066 880 620 48%/52% 63%/37% 282 425 376 331 131 91 157 65 100 57 102 55 293 307 431 169
Salmo salar U12143 520 520 426 426 55%/45% 55%/45% 102 188 96 194 156 55 164 47 160 97 146 111 102 86 114 74
Sceloporus undulatus L28075 486 454 460 492 51%/49% 48%/52% 119 235 98 256 122 43 129 36 126 109 109 126 119 73 118 74
Schizosaccharomyces pombe X15738 810 854 588 544 58%/42% 61%/39% 226 253 236 243 185 93 191 87 136 57 135 58 263 185 292 156
Scyliorhinus canicula Y16067 506 518 454 442 53%/47% 54%/46% 115 193 114 194 132 58 145 45 135 90 123 102 124 113 136 101
Secale cereale Z14059 898 1218 1079 759 45%/55% 62%/38% 141 360 187 314 315 289 422 182 244 220 337 127 198 210 272 136
Sphenodon punctatus L28076 472 438 432 466 52%/48% 48%/52% 114 214 90 238 127 45 129 43 118 101 110 109 113 72 109 76
Spizellomyces punctatus AF404303 698 764 515 449 58%/42% 63%/37% 152 224 181 195 192 84 201 75 163 66 158 71 191 141 224 108
Stenella coeruleoalba X78169 520 498 454 476 53%/47% 51%/49% 135 216 113 238 128 51 136 43 127 98 116 109 130 89 133 86
Suillus sinuspaulianus L47584 1088 1232 899 755 55%/45% 62%/38% 328 408 369 367 227 121 247 101 161 84 169 76 372 286 447 211
Tetrahymena pyriformis M12714 796 1000 873 669 48%/52% 60%/40% 230 382 289 323 178 122 211 89 128 84 141 71 260 285 359 186
Trachemys scripta L28077 480 492 486 474 50%/50% 51%/49% 122 236 110 248 123 44 136 31 122 111 120 113 113 95 126 82
Triticum aestivum Z14078 898 1224 1059 733 46%/54% 63%/37% 141 359 178 322 315 280 434 161 244 211 341 114 198 209 271 136
Trypanosoma brucei X02547 136 358 485 263 22%/78% 58%/42% 51 202 137 116 16 53 42 27 9 27 18 18 60 203 161 102
Williopsis saturnus var. mrakii X71392 712 994 898 616 44%/56% 62%/38% 234 410 338 306 131 97 159 69 94 56 97 53 253 335 400 188
Xenopus laevis M27605 502 498 443 447 53%/47% 53%/47% 105 198 102 201 142 41 147 36 144 102 134 112 111 102 115 98
Zea mays X00794 910 1226 1052 736 46%/54% 62%/38% 133 358 183 308 323 279 430 172 254 209 345 118 200 206 268 138
Eukaryotic Nuclear   Paired Unpaired Ratio1 A2 G C U
C M C M C M PC UPC PM UPM PC UPC PM UPM PC UPC PM UPM PC UPC PM UPM
Acanthamoeba castellanii U07413 1088 1488 1202 802 48%/52% 65%/35% 181 347 222 306 357 296 522 131 280 262 388 154 270 297 356 211
Agmasoma penaei NPA 663 660 448 451 60%/40% 59%/41% 151 207 148 210 188 82 182 88 121 50 139 32 203 109 191 121
Ahnfeltia plicata Z14139 990 1122 775 643 56%/44% 64%/36% 146 272 168 250 349 182 393 138 282 111 302 91 213 210 259 164
Alexandrium fundyense U09048 885 1163 912 634 49%/51% 65%/35% 182 316 254 244 261 190 327 124 191 124 235 80 251 282 347 186
Amblyospora sp. U68474 802 842 546 506 59%/41% 62%/38% 133 222 147 208 275 124 274 125 192 67 207 52 202 133 214 121
Ameson michaelis L15741 740 790 535 485 58%/42% 62%/38% 159 233 173 219 216 119 222 113 156 59 166 49 209 124 229 104
Androctonus australis X77908 966 1132 846 680 53%/47% 62%/38% 174 296 212 258 319 172 354 137 255 155 288 122 218 223 278 163
Antonospora scoticae AF024655 813 838 558 533 59%/41% 61%/39% 100 216 83 233 329 198 336 191 249 74 275 48 135 70 144 61
Artemia salina X01723 962 1168 848 642 53%/47% 65%/35% 168 286 202 252 324 179 382 121 249 168 300 117 221 215 284 152
Audouinella dasyae L26181 992 1126 779 645 56%/44% 64%/36% 156 278 190 244 337 177 373 141 275 100 281 94 224 224 282 166
Audouinella hermannii AF026040 992 1072 779 699 56%/44% 61%/39% 153 274 172 255 340 178 364 154 281 106 287 100 218 221 249 190
Aulacoseira ambigua X85404 998 1146 846 698 54%/46% 62%/38% 185 298 222 261 313 185 351 147 241 117 262 96 259 246 311 194
Babesia bigemina X59604 902 1062 799 639 53%/47% 62%/38% 169 247 210 206 279 161 321 119 221 119 242 98 233 272 289 216
Bacillidium sp. AF104087 791 806 595 580 57%/43% 58%/42% 189 277 186 280 217 108 217 108 163 52 166 49 222 158 237 143
Balamuthia mandrillaris AF019071 992 1258 1025 759 49%/51% 62%/38% 186 340 229 297 306 235 400 141 230 184 298 116 270 266 331 205
Balbiania investiens AF132294 953 1092 762 623 56%/44% 64%/36% 150 267 180 237 328 174 366 136 263 103 284 82 212 218 262 168
Bangia sp. (Northwest Territories/NWT) AF043355 990 1084 807 713 55%/45% 60%/40% 172 284 180 276 324 162 362 124 256 127 269 114 238 234 273 199
Bangiopsis subsimplex AF168627 996 1100 773 669 56%/44% 62%/38% 179 288 203 264 313 151 347 117 255 119 259 115 249 215 291 173
Batrachospermum gelatinosum AF026045 982 1114 783 651 56%/44% 63%/37% 145 280 184 241 344 178 373 149 277 105 285 97 216 220 272 164
Batrachospermum macrosporum AF026048 994 1112 776 658 56%/44% 63%/37% 156 272 181 247 345 174 375 144 287 106 290 103 206 224 266 164
Bonnemaisonia hamifera L26182 986 1162 778 602 56%/44% 66%/34% 153 269 187 235 344 184 394 134 276 102 288 90 213 223 293 143
Bostrychia moritziana AF203893 1006 1090 787 703 56%/44% 61%/39% 180 297 202 275 321 161 343 139 257 98 262 93 248 231 283 196
Candida albicans M60302 990 1122 797 665 55%/45% 63%/37% 182 300 216 266 311 150 345 116 248 99 252 95 249 248 309 188
Ceramium rubrum L26183 998 1130 780 648 56%/44% 64%/36% 151 278 189 240 343 170 376 137 274 103 283 94 230 229 282 177
Chlorella luteoviridis X73998 982 1180 818 620 55%/45% 66%/34% 159 288 214 233 331 168 376 123 264 145 295 114 228 217 295 150
Chondrus crispus Z14140 998 1136 780 642 56%/44% 64%/36% 165 272 199 238 339 182 369 152 270 99 282 87 224 227 286 165
Compsopogon coeruleus AF087124 965 1096 763 632 56%/44% 63%/37% 169 269 202 236 311 170 346 135 242 98 253 87 243 226 295 174
Corallina officinalis L26184 1012 1134 774 652 57%/43% 63%/37% 170 288 205 253 339 162 362 139 268 102 275 95 235 222 292 165
Crossodonthina koreana Z36893 970 1084 841 727 54%/46% 60%/40% 180 286 201 265 312 172 341 143 237 135 260 112 241 248 282 207
Cryptocercus punctulatus NPA 982 1320 1034 696 49%/51% 65%/35% 158 308 210 256 336 236 450 122 273 240 365 148 215 250 295 170
Cryptococcus neoformans var. neoformans L05428 994 1122 808 680 55%/45% 62%/38% 172 297 207 262 329 159 354 134 250 124 265 109 243 228 296 175
Culicosporella lunata AF027683 830 880 513 463 62%/38% 66%/34% 184 231 197 218 241 108 243 106 179 62 182 59 226 112 258 80
Cyanophora paradoxa X68483 1016 1144 791 663 56%/44% 63%/37% 197 291 229 259 314 148 343 119 240 115 254 101 265 237 318 184
Cymatosira belgica X85387 999 1438 1317 878 43%/57% 62%/38% 188 426 295 319 312 233 424 121 243 239 321 161 256 419 398 277
Cyrtohymena citrina AF164135 962 1096 810 676 54%/46% 62%/38% 187 292 216 263 294 160 332 122 239 110 247 102 242 248 301 189
Dixonielloa grisea L26187 984 1106 805 683 55%/45% 62%/38% 181 318 218 281 315 178 335 158 225 86 244 67 263 223 309 177
Drosophila melanogaster M21017 996 1230 999 765 50%/50% 62%/38% 204 359 266 297 286 187 349 124 233 142 266 109 273 311 349 235
Echinococcus granulosus U27015 948 1580 1446 814 40%/60% 66%/34% 156 337 221 272 326 438 569 195 248 293 414 127 218 378 376 220
Edhazardia aedis AF027684 898 904 550 544 62%/38% 62%/38% 165 227 178 214 302 130 274 158 194 57 197 54 237 136 255 118
Encephalitozoon cuniculi X98467 784 798 511 497 61%/39% 62%/38% 116 180 131 165 286 160 268 178 179 51 188 42 203 120 211 112
Encephalitozoon hellem AF118143 782 814 532 500 60%/40% 62%/38% 126 195 159 162 275 147 248 174 163 45 168 40 218 145 239 124
Encephalitozoon sp. L16867 776 782 519 513 60%/40% 60%/40% 122 196 130 188 278 163 261 180 176 46 179 43 200 114 212 102
Endoreticulatus schubergi L39109 752 738 500 514 60%/40% 59%/41% 135 224 125 234 256 143 244 155 185 55 190 50 176 78 179 75
Engelmanniella mobilis AF164134 962 1090 811 683 54%/46% 61%/39% 187 292 221 258 293 161 324 130 240 111 254 97 242 247 291 198
Enterocytozoonidae gen. sp. AF201911 733 792 567 508 56%/44% 61%/39% 136 232 146 222 239 135 250 124 177 68 190 55 181 132 206 107
Erythrotrichia carnea L26189 1002 1138 793 657 56%/44% 63%/37% 178 287 208 257 317 155 361 111 256 111 266 101 251 240 303 188
Euglypha rotunda X77692 996 1146 815 665 55%/45% 63%/37% 188 296 240 244 307 150 333 124 246 118 255 109 255 251 318 188
Euplotes aediculatus M14590 940 1176 942 706 50%/50% 62%/38% 186 322 247 261 285 177 341 121 232 142 260 114 237 301 328 210
Flabelliforma montana AJ252962 634 674 481 441 57%/43% 60%/40% 97 182 103 176 231 135 234 132 169 72 189 52 137 92 148 81
Fragaria x ananassa X15590 992 1126 812 678 55%/45% 62%/38% 168 283 202 249 323 168 361 130 264 134 281 117 237 227 282 182
Gastrostyla steinei AF164133 960 1098 811 673 54%/46% 62%/38% 189 292 225 256 291 158 324 125 235 109 246 98 245 252 303 194
Gelidium vagum L26190 998 1148 771 621 56%/44% 65%/35% 155 271 193 233 345 172 381 136 277 102 287 92 221 226 287 160
Genicularia spirotaenia X74753 990 1130 813 673 55%/45% 63%/37% 187 291 232 246 307 159 333 133 237 129 257 109 259 234 308 185
Giardia ardeae Z17210 788 950 647 485 55%/45% 66%/34% 69 171 63 177 324 224 412 136 301 173 362 112 94 79 113 60
Giardia intestinalis X52949 794 964 658 488 55%/45% 66%/34% 62 166 53 175 331 222 429 124 325 207 389 143 76 63 93 46
Giardia muris X65063 770 864 662 568 54%/46% 60%/40% 109 241 117 233 285 216 315 186 239 106 267 78 137 99 165 71
Glaucocystis nostochinearum X70803 998 1130 821 689 55%/45% 62%/38% 184 297 219 262 311 156 346 121 236 125 267 94 267 243 298 212
Gloeochaete wittrockiana X81901 996 1164 805 637 55%/45% 65%/35% 178 281 215 244 318 163 367 114 245 126 272 99 255 235 310 180
Glomus intraradices X58725 928 1114 811 625 53%/47% 64%/36% 186 296 239 243 278 160 318 120 204 118 229 93 260 237 328 169
Glugea atherinae U15987 778 782 557 553 58%/42% 59%/41% 135 249 122 262 282 146 269 159 195 64 211 48 166 98 180 84
Glugea stephani AF056015 686 656 479 509 59%/41% 56%/44% 127 216 96 247 248 129 232 145 168 56 179 45 143 78 149 72
Gracilariopsis sp. M33639 998 1134 784 648 56%/44% 64%/36% 158 285 199 244 343 172 368 147 265 107 282 90 232 220 285 167
Halymenia plana U33133 998 1114 772 656 56%/44% 63%/37% 162 272 191 243 339 173 366 146 270 101 277 94 227 226 280 173
Hexamita sp. Z17224 822 964 728 586 53%/47% 62%/38% 137 254 158 233 272 177 324 125 220 128 254 94 193 169 228 134
Hildenbrandia rubra L19345 1004 1162 776 618 56%/44% 65%/35% 165 282 194 253 346 178 387 137 254 111 282 83 239 205 299 145
Homo sapiens K03432 1048 1212 822 658 56%/44% 65%/35% 165 254 181 238 358 191 425 124 312 188 349 151 213 189 257 145
Ichthyosporidium sp. L39110 774 802 578 550 57%/43% 59%/41% 140 246 130 256 273 145 272 146 198 72 212 58 163 115 188 90
Janacekia debaisieuxi AJ252950 800 842 617 575 56%/44% 59%/41% 186 275 212 249 227 106 209 124 162 57 154 65 225 179 267 137
Lecanora dispersa NPA 848 1016 796 628 52%/48% 62%/38% 156 265 182 239 273 171 326 118 208 132 234 106 211 228 274 165
Lilioceris lilii NPA 993 1158 889 724 53%/47% 62%/38% 161 300 192 269 340 182 387 135 270 182 318 134 222 225 261 186
Loma acerinae AJ252951 788 794 564 558 58%/42% 59%/41% 136 238 105 269 291 175 292 174 205 72 227 50 156 79 170 65
Mastigamoeba balamuthi L23799 1090 1814 1634 910 40%/60% 67%/33% 204 511 340 375 336 402 567 171 252 295 401 146 298 426 506 218
Microgemma sp. AJ252952 790 804 558 544 59%/41% 60%/40% 157 247 129 275 273 146 273 146 192 55 203 44 168 110 199 79
Microsporidium 57864 U90885 766 770 479 475 62%/38% 62%/38% 194 209 190 213 195 91 195 91 126 46 124 48 251 133 261 123
Mus musculus X00686 1008 1212 861 657 54%/46% 65%/35% 155 262 182 235 354 196 424 126 295 202 347 150 204 201 259 146
Mytilus edulis L24489 982 1172 844 654 54%/46% 64%/36% 170 286 208 248 327 173 378 122 264 154 290 128 221 231 296 156
Naegleria gruberi Thesis, Mullican J. 890 1256 1129 763 44%/56% 62%/38% 183 333 223 293 264 273 405 132 224 203 306 121 219 320 322 217
Nemalion helminthoides L26196 998 1070 771 699 56%/44% 60%/40% 164 273 183 254 336 172 352 156 273 106 279 100 225 220 256 189
Nemalionopsis shawii AF506272 979 1110 757 626 56%/44% 64%/36% 156 272 187 241 333 163 368 128 266 102 282 86 224 220 273 171
Nosema algerae AF069063 838 888 552 502 60%/40% 64%/36% 159 219 173 205 263 132 271 124 190 66 199 57 226 135 245 116
Nosema apis U97150 744 736 498 506 60%/40% 59%/41% 175 212 176 211 200 97 192 105 131 52 129 54 238 137 239 136
Nosema necatrix U11051 710 756 537 491 57%/43% 61%/39% 180 225 191 214 183 108 187 104 117 54 118 53 230 150 260 120
Okanagana utahensis U06478 1010 1202 907 715 53%/47% 63%/37% 161 306 199 268 347 188 402 133 290 181 341 130 212 232 260 184
Onychodromus quadricornutus X53485 960 1118 810 652 54%/46% 63%/37% 187 294 227 254 292 159 332 119 233 109 249 93 248 248 310 186
Ophiopholis aculeata L28056 894 1148 907 653 50%/50% 64%/36% 170 287 199 258 286 209 375 120 232 178 297 113 206 233 277 162
Oxytricha granulifera AF164122 962 1102 812 672 54%/46% 62%/38% 190 296 227 259 291 156 324 123 240 107 243 104 241 253 308 186
Oxytricha longa AF164125 958 1116 812 654 54%/46% 63%/37% 181 291 224 248 297 159 334 122 243 107 253 97 237 255 305 187
Palmaria palmata Z14142 998 1126 773 645 56%/44% 64%/36% 151 277 184 244 346 172 379 139 283 102 287 98 218 222 276 164
Paraurostyla weissei AF164127 960 1100 811 671 54%/46% 62%/38% 186 296 225 257 294 156 325 125 241 114 254 101 239 245 296 188
Paruroleptus lepisma AF164132 960 1066 812 706 54%/46% 60%/40% 186 297 210 273 295 161 323 133 236 107 243 100 243 247 290 200
Paulinella chromatophora X81811 1003 1136 812 679 55%/45% 63%/37% 173 293 203 263 327 156 365 118 260 122 280 102 243 241 288 196
Placopecten magellanicus X53899 972 1132 843 683 54%/46% 62%/38% 173 284 202 255 321 167 364 124 252 155 286 121 226 237 280 183
Plasmodium falciparum (A gene) M19172 1074 1302 1016 788 51%/49% 62%/38% 266 379 354 291 270 150 297 123 214 110 226 98 324 377 425 276
Plasmodium falciparum (S gene) M19173 1076 1316 1069 829 50%/50% 61%/39% 287 419 365 341 251 162 293 120 192 104 200 96 346 384 458 272
Plasmodium vivax (A gene) U07367 1048 1298 1015 765 51%/49% 63%/37% 242 372 333 281 281 160 316 125 229 121 241 109 296 362 408 250
Plasmodium vivax (O gene) U93095 1108 1486 1121 743 50%/50% 67%/33% 268 388 367 289 292 212 376 128 236 157 291 102 312 364 452 224
Plasmodium vivax (S gene) U07368 1094 1388 1053 759 51%/49% 65%/35% 253 393 340 306 294 170 354 110 224 137 248 113 323 353 446 230
Pleistophora hippoglossoideos AJ252953 802 802 570 570 58%/42% 58%/42% 141 242 132 251 288 165 269 184 206 64 213 57 167 99 188 78
Pleistophora sp. U10342 730 726 502 506 59%/41% 59%/41% 133 218 132 219 250 144 231 163 176 59 183 52 171 81 180 72
Pleurotricha lanceolota AF164128 960 1080 811 691 54%/46% 61%/39% 189 294 221 262 291 157 319 129 236 108 250 94 244 252 290 206
Plocamiocolax pulvinata U09618 1002 1106 769 665 57%/43% 62%/38% 169 277 189 257 335 169 364 140 261 104 267 98 237 219 286 170
Polydispyrenia simulii AJ252960 734 784 557 507 57%/43% 61%/39% 112 207 123 196 256 154 269 141 198 90 222 66 168 106 170 104
Porphyra miniata AF175540 993 1116 808 685 55%/45% 62%/38% 169 282 213 238 324 168 345 147 256 118 261 113 244 240 297 187
Porphyridium aerugineum L27635 995 1116 767 646 56%/44% 63%/37% 180 269 210 239 319 176 347 148 247 104 258 93 249 218 301 166
Reticulitermes flavipes NPA 996 1170 886 712 53%/47% 62%/38% 167 290 199 258 332 185 386 131 273 176 312 137 224 235 273 186
Rhodella maculata U21217 974 1120 781 635 55%/45% 64%/36% 167 287 213 241 321 163 347 137 249 103 251 101 237 228 309 156
Rhodochaete parvula AF139462 974 1100 784 658 55%/45% 63%/37% 174 285 207 252 308 152 343 117 252 111 260 103 240 236 290 186
Rhodogorgon carriebowensis AF006089 1030 1168 811 673 56%/44% 63%/37% 159 280 190 249 359 188 394 153 279 112 293 98 233 231 291 173
Rhodymenia leptophylla U09621 1000 1132 771 639 56%/44% 64%/36% 161 274 195 240 341 169 371 139 273 102 280 95 225 226 286 165
Saccharomyces cerevisiae U53879 994 1070 806 730 55%/45% 59%/41% 185 298 208 275 311 148 327 132 248 100 250 98 250 260 285 225
Spraguea lophii AF033197 785 798 613 600 56%/44% 57%/43% 155 267 135 287 269 171 264 176 184 66 198 52 177 109 201 85
Staurastrum sp. M752 X74752 988 1122 815 681 55%/45% 62%/38% 175 293 225 243 314 163 336 141 239 133 263 109 260 226 298 188
Strongylocentrotus purpuratus L28055 892 1146 904 650 50%/50% 64%/36% 159 279 195 243 293 210 378 125 236 194 296 134 204 221 277 148
Stylonychia lemnae AF164124 960 1096 810 674 54%/46% 62%/38% 185 292 224 253 294 159 324 129 238 108 243 103 243 251 305 189
Stylonychia mytilus AF164123 960 1090 811 681 54%/46% 62%/38% 187 293 217 263 293 157 328 122 239 109 252 96 241 252 293 200
Thalassiosira eccentrica X85396 995 1116 805 684 55%/45% 62%/38% 191 289 228 252 310 151 330 131 240 111 253 98 254 254 305 203
Thelohania solenopsae AF031538 821 840 561 542 59%/41% 61%/39% 175 242 184 233 235 113 236 112 169 60 164 65 242 146 256 132
Thelohania sp. AF031537 612 662 518 468 54%/46% 59%/41% 133 218 144 207 185 104 187 102 120 55 134 41 174 141 197 118
Thorea hispida AF506273 998 1108 761 651 57%/43% 63%/37% 155 275 173 257 348 177 381 144 272 90 282 80 223 219 272 170
Thorea violacea AF026042 1094 1210 822 706 57%/43% 63%/37% 181 286 213 254 367 178 392 153 285 107 291 101 261 251 314 198
Thorea violacea AF506274 993 1116 759 636 57%/43% 64%/36% 154 274 177 251 346 177 381 142 267 90 278 79 226 218 280 164
Toxoplasma gondii (P) X75453 890 1156 903 637 50%/50% 64%/36% 168 302 234 236 272 186 344 114 219 143 263 99 231 272 315 188
Trachipleistophora hominis AJ002605 796 800 566 562 58%/42% 59%/41% 129 231 111 249 297 181 289 189 215 66 235 46 155 88 165 78
Tritrichomonas foetus M81842 894 1002 677 569 57%/43% 64%/36% 180 229 190 219 285 145 311 119 221 110 234 97 208 193 267 134
Uroleptus gallina AF164130 962 1104 813 671 54%/46% 62%/38% 187 290 227 250 293 160 325 128 239 115 251 103 243 248 301 190
Uroleptus pisces AF164131 962 1054 810 718 54%/46% 59%/41% 186 295 214 267 296 161 313 144 240 110 237 113 240 244 290 194
Urostyla grandis AF164129 960 1080 808 688 54%/46% 61%/39% 193 292 223 262 284 158 317 125 232 103 234 101 251 255 306 200
Vairimorpha necatrix Y00266 M24612 740 754 504 490 59%/41% 61%/39% 181 220 190 211 196 97 187 106 125 47 119 53 238 140 258 120
Vairimorpha sp. Argentina AF031539 706 766 546 486 56%/44% 61%/39% 114 220 122 212 266 160 261 165 179 72 211 40 147 94 172 69
Vavraia culicis AJ252961 802 806 562 558 59%/41% 59%/41% 132 225 110 247 301 177 293 185 217 75 236 56 152 85 167 70
Visvesvaria acridophagus AF024658 856 880 543 519 61%/39% 63%/37% 185 232 198 219 240 110 242 108 177 64 180 61 254 137 260 131
Weiseria palustris AF132544 806 856 568 518 59%/41% 62%/38% 133 225 149 209 272 136 279 129 206 83 219 70 195 124 209 110
Xenopus laevis X04025 976 1172 850 654 53%/47% 64%/36% 159 274 197 236 333 183 389 127 275 191 327 139 209 202 259 152

† We count the number of A,G,C and U nucleotides paired or unpaired, regardless of the type of base-pair they appear in (i.e., canonical or non-canonical).
1 Paired and Unpaired percentages are calculated by dividing the number of paired or unpaired nucleotides in a given category by the total number of nucelotides for all sequences in that category.
2 C, Comparative; M, Mfold 3.1; PC, Comparative, Paired Nucleotides; UPC, Comparative, Unpaired Nucleotides; PM, Nucleotides Predicted to be Paired by MFold; UPM, Nucleotides Predicted to be Unpaired by MFold.
3 NPA, Not Publically Available - The sequence used for analysis has not been deposited in Genbank.