*Details for Individual Sequences in the Dataset are Available Under the Respective Links
Sequences | Average Length | Max/Min Length | A | G | C | U | Total1 | Total2 | %GC | ||
---|---|---|---|---|---|---|---|---|---|---|---|
tRNA | |||||||||||
Overall | 569 | 76 +/- 1 | 80 | 72 | 8,425 | 12,819 | 11,240 | 9,799 | 42,283 | 43,189 | 56% |
Archaea | 76 | 77 +/- 1 | 80 | 74 | 1,003 | 1,852 | 1,730 | 1,121 | 5,706 | 5,822 | 62% |
Bacteria | 155 | 76 +/- 1 | 77 | 73 | 2,344 | 3,521 | 3,174 | 2,639 | 11,678 | 11,775 | 57% |
Eucarya (n)3 | 207 | 76 +/- 1 | 78 | 73 | 2,968 | 4,684 | 4,006 | 3,635 | 15,293 | 15,649 | 56% |
Eucarya (c) | 131 | 76 +/- 1 | 77 | 72 | 2,110 | 2,762 | 2,330 | 2,404 | 9,606 | 9,943 | 51% |
5S rRNA | |||||||||||
Overall | 90 | 120 +/- 3 | 130 | 109 | 2,432 | 3,185 | 2,975 | 2,185 | 10,777 | 10,819 | 57% |
Archaea | 12 | 125 +/- 3 | 130 | 120 | 299 | 474 | 469 | 252 | 1,494 | 1,495 | 63% |
Bacteria | 28 | 119 +/- 3 | 124 | 109 | 752 | 1,008 | 954 | 593 | 3,307 | 3,340 | 59% |
Eucarya (n) | 45 | 120 +/- 1 | 123 | 118 | 1,219 | 1,561 | 1,431 | 1,172 | 5,383 | 5,390 | 56% |
Eucarya (c) | 4 | 120 +/- 2 | 121 | 118 | 127 | 120 | 102 | 130 | 479 | 479 | 46% |
Eucarya (m) | 1 | 115 | - | - | 35 | 22 | 19 | 38 | 114 | 115 | 36% |
16S rRNA | |||||||||||
Overall | 496 | 1,485 +/- 303 | 2,741 | 547 | 195,126 | 205,441 | 155,103 | 168,805 | 724,475 | 736,412 | 48% |
Archaea | 23 | 1,486 +/- 14 | 1,512 | 1,427 | 7,433 | 11,718 | 9,265 | 5,719 | 34,135 | 34,168 | 61% |
Bacteria | 194 | 1,529 +/- 25 | 1,744 | 1,472 | 71,636 | 92,504 | 67,140 | 58,552 | 289,832 | 298,116 | 54% |
Eucarya (n) | 134 | 1,707 +/- 266 | 2,741 | 1,242 | 58,926 | 62,146 | 45,894 | 57,831 | 224,797 | 226,974 | 48% |
Eucarya (c) | 33 | 1,496 +/- 37 | 1,589 | 1,426 | 13,986 | 13,163 | 9,454 | 11,540 | 48,143 | 49,354 | 46% |
Eucarya (m) | 112 | 1,141 +/- 376 | 1,990 | 547 | 43,145 | 25,910 | 23,350 | 35,163 | 127,568 | 127,800 | 38% |
23S rRNA | |||||||||||
Overall | 256 | 2,792 +/- 820 | 5,461 | 953 | 203,626 | 193,690 | 146,072 | 169,187 | 712,575 | 714,723 | 46% |
Archaea | 17 | 3,008 +/- 187 | 3,699 | 2,905 | 12,090 | 16,883 | 13,111 | 9,048 | 51,132 | 51,141 | 59% |
Bacteria | 75 | 2,935 +/- 85 | 3,204 | 2,759 | 58,962 | 67,531 | 47,408 | 45,489 | 219,390 | 220,133 | 52% |
Eucarya (n) | 52 | 3,667 +/- 639 | 5,461 | 2,552 | 48,016 | 53,630 | 42,245 | 45,526 | 189,417 | 190,702 | 50% |
Eucarya (c) | 31 | 2,969 +/- 116 | 3,207 | 2,700 | 27,386 | 25,494 | 18,301 | 20,859 | 92,040 | 92,040 | 48% |
Eucarya (m) | 81 | 1984 +/- 813 | 4,216 | 953 | 57,172 | 30,152 | 25,007 | 48,265 | 160,596 | 160,707 | 33% |
- Total number of A, G, C or U nucleotides in the dataset only. Nucleotides are counted whether they appear in a canonical or non-canonical base-pair.
- Total nucleotide count, includes both A,G,C,U and all others (identifed by various IUPAC symbols).
- (n), Nuclear encoded sequences; (c), Chloroplast encoded sequences; (m), Mitochondrial encoded sequences.