Archaea   3-10 11-20 21-30 31-40 41-50 51-60 61-70 71-80 81-90 91-100
C1 P A C P A C P A C P A C P A C P A C P A C P A C P A C P A
Archaeoglobus fulgidus M64487 154 87 56% 176 131 74% 82 52 63% 45 41 91% 36 33 92% 29 25 86% 24 16 67% 31 25 81% 29 26 90% 22 18 82%
Desulfurococcus mobilis X05480 160 94 59% 186 117 63% 101 39 39% 48 28 58% 35 26 74% 33 23 70% 24 18 75% 29 25 86% 26 26 100% 13 13 100%
Haloarcula marismortui X13738 143 73 51% 167 100 60% 89 45 51% 42 22 52% 33 20 61% 34 21 62% 22 12 55% 31 23 74% 26 16 62% 23 7 30%
Haloarcula marismortui rrnA AF034619 144 80 56% 166 106 64% 88 57 65% 42 29 69% 33 20 61% 34 17 50% 22 12 55% 31 23 74% 25 15 60% 22 8 36%
Haloarcula marismortui rrnB AF034620 144 80 56% 168 105 63% 89 56 63% 42 28 67% 33 23 70% 34 21 62% 22 12 55% 29 23 79% 25 21 84% 22 10 45%
Halobacterium salinarum X03407 146 86 59% 169 102 60% 81 53 65% 45 29 64% 31 24 77% 33 16 48% 21 13 62% 29 23 79% 27 25 93% 22 15 68%
Halococcus morrhuae X05481 146 89 61% 171 115 67% 84 58 69% 44 24 55% 34 21 62% 33 15 45% 21 12 57% 28 21 75% 24 16 67% 21 14 67%
Haloferax volcanii Thesis, Achenbach-Richter L. 147 87 59% 165 99 60% 78 49 63% 43 28 65% 31 21 68% 33 19 58% 23 16 70% 28 23 82% 29 20 69% 18 10 56%
Methanococcus jannaschii U67517 L77117 156 102 65% 183 137 75% 93 60 65% 47 35 74% 35 28 80% 36 18 50% 27 17 63% 31 29 94% 26 25 96% 22 22 100%
Methanococcus vannielii X02729 158 93 59% 173 125 72% 85 51 60% 44 29 66% 35 23 66% 30 10 33% 23 10 43% 27 20 74% 27 21 78% 21 12 57%
Methanospirillum hungatei M81323 150 85 57% 169 90 53% 77 36 47% 42 20 48% 33 10 30% 30 4 13% 23 8 35% 30 12 40% 26 14 54% 21 7 33%
Methanothermobacter thermautotrophicus X05482 156 82 53% 184 79 43% 88 35 40% 41 22 54% 37 19 51% 36 9 25% 21 11 52% 30 15 50% 27 12 44% 16 6 38%
Sulfolobus acidocaldarius M67495 165 88 53% 183 102 56% 94 43 46% 44 24 55% 33 19 58% 34 17 50% 23 11 48% 30 23 77% 24 20 83% 19 15 79%
Thermococcus celer M67497 157 90 57% 183 123 67% 92 58 63% 49 34 69% 37 24 65% 28 8 29% 21 18 86% 33 30 91% 26 26 100% 23 23 100%
Thermofilum pendens X14835 158 94 59% 193 131 68% 97 56 58% 52 32 62% 37 25 68% 31 15 48% 22 10 45% 33 21 64% 22 20 91% 18 11 61%
Thermoplasma acidophilum M32298 150 93 62% 173 113 65% 80 48 60% 42 31 74% 37 30 81% 31 14 45% 18 11 61% 22 15 68% 28 25 89% 23 17 74%
Thermoproteus tenax PUBMED 161 100 62% 188 131 70% 96 56 58% 47 26 55% 37 25 68% 31 14 45% 25 20 80% 32 27 84% 23 18 78% 21 13 62%
Bacteria   3-10 11-20 21-30 31-40 41-50 51-60 61-70 71-80 81-90 91-100
C1 P A C P A C P A C P A C P A C P A C P A C P A C P A C P A
Acinetobacter calcoaceticus X87280 140 86 61% 182 120 66% 87 40 46% 40 9 23% 35 5 14% 36 5 14% 30 9 30% 32 14 44% 18 9 50% 14 6 43%
Aeromonas hydrophila X87281 144 89 62% 181 123 68% 86 43 50% 39 21 54% 35 18 51% 35 10 29% 28 14 50% 31 20 65% 17 9 53% 14 4 29%
Aquifex aeolicus AE000709 AE000751 147 87 59% 180 133 74% 95 50 53% 47 34 72% 34 19 56% 40 17 43% 27 13 48% 30 17 57% 19 13 68% 18 15 83%
Bacillus anthracis X64645 134 86 64% 185 112 61% 81 38 47% 35 15 43% 34 11 32% 38 10 26% 28 10 36% 32 19 59% 22 11 50% 17 5 29%
Bacillus sp. X60981 144 84 58% 180 107 59% 83 42 51% 32 18 56% 33 16 48% 33 11 33% 29 19 66% 30 19 63% 21 15 71% 17 11 65%
Bacillus subtilis K00637 AF008220 Z99119 142 90 63% 183 111 61% 86 35 41% 36 23 64% 34 22 65% 38 11 29% 29 16 55% 32 24 75% 22 17 77% 15 11 73%
Bartonella bacilliformis L39095 133 83 62% 174 130 75% 93 54 58% 42 24 57% 38 24 63% 38 19 50% 30 16 53% 39 28 72% 23 15 65% 15 12 80%
Bordetella bronchiseptica X70371 136 67 49% 174 91 52% 81 41 51% 40 25 63% 36 18 50% 41 14 34% 24 14 58% 32 21 66% 18 3 17% 18 0 0%
Bordetella pertussis X68323 132 64 48% 170 91 54% 82 43 52% 40 29 73% 36 16 44% 39 10 26% 27 15 56% 32 15 47% 17 5 29% 17 5 29%
Borrelia burgdorferi M88330 146 72 49% 186 95 51% 89 42 47% 37 14 38% 33 9 27% 36 9 25% 30 17 57% 34 21 62% 20 13 65% 14 5 36%
Bradyrhizobium japonicum Z35330 135 97 72% 167 126 75% 86 42 49% 37 21 57% 37 30 81% 34 15 44% 27 21 78% 42 30 71% 26 19 73% 19 14 74%
Bradyrhizobium japonicum X71840 133 93 70% 166 119 72% 89 49 55% 37 24 65% 37 32 86% 37 19 51% 29 19 66% 42 31 74% 26 21 81% 19 16 84%
Burkholderia cepacia X16368 140 98 70% 177 106 60% 84 57 68% 39 23 59% 35 22 63% 41 12 29% 27 14 52% 31 19 61% 17 9 53% 18 12 67%
Burkholderia mallei Y17183 141 96 68% 178 99 56% 84 46 55% 39 24 62% 35 20 57% 40 12 30% 27 15 56% 32 24 75% 19 11 58% 17 8 47%
Burkholderia pseudomallei Y17184 141 93 66% 178 97 54% 84 46 55% 39 24 62% 35 20 57% 40 12 30% 27 15 56% 32 24 75% 19 11 58% 17 8 47%
Campylobacter coli U09611 139 87 63% 172 109 63% 89 55 62% 41 28 68% 37 22 59% 38 18 47% 26 17 65% 32 18 56% 21 12 57% 20 11 55%
Campylobacter jejuni Z29326 141 82 58% 173 120 69% 89 50 56% 39 22 56% 34 16 47% 40 12 30% 29 7 24% 31 12 39% 18 10 56% 18 6 33%
Chlamydia suis U68420 139 71 51% 177 102 58% 84 33 39% 41 22 54% 33 16 48% 33 14 42% 24 14 58% 31 20 65% 18 11 61% 19 10 53%
Chlamydia trachomatis U68443 136 71 52% 180 101 56% 88 34 39% 42 13 31% 34 8 24% 34 11 32% 29 14 48% 32 21 66% 20 10 50% 19 5 26%
Chlamydophila pneumoniae U76711 AE001668 141 84 60% 176 104 59% 84 38 45% 41 20 49% 33 13 39% 30 11 37% 25 14 56% 31 22 71% 18 12 67% 19 14 74%
Chlamydophila psittaci U68447 140 75 54% 181 98 54% 90 35 39% 44 7 16% 34 14 41% 33 16 48% 30 17 57% 32 22 69% 21 12 57% 18 4 22%
Chlorobium limicola M62805 139 97 70% 160 111 69% 74 42 57% 31 16 52% 26 14 54% 35 15 43% 24 15 63% 30 20 67% 17 13 76% 17 9 53%
Citrobacter freundii U77928 142 86 61% 178 97 54% 85 34 40% 38 11 29% 36 9 25% 39 12 31% 31 19 61% 30 17 57% 17 7 41% 17 6 35%
Clostridium botulinum A X65602 139 89 64% 176 126 72% 86 54 63% 34 15 44% 32 14 44% 35 9 26% 26 10 38% 32 19 59% 19 10 53% 19 5 26%
Clostridium botulinum B M94178 143 94 66% 180 127 71% 87 54 62% 36 24 67% 33 21 64% 36 13 36% 30 18 60% 31 17 55% 19 12 63% 19 10 53%
Clostridium botulinum B M94259 142 98 69% 179 117 65% 86 43 50% 36 21 58% 33 21 64% 36 13 36% 30 17 57% 31 20 65% 19 12 63% 19 10 53%
Clostridium botulinum E M94261 139 98 71% 181 117 65% 87 45 52% 36 21 58% 33 21 64% 36 15 42% 30 14 47% 30 19 63% 19 12 63% 18 9 50%
Coxiella burnetii X79704 135 62 46% 154 85 55% 74 17 23% 31 8 26% 27 3 11% 39 8 21% 29 14 48% 35 18 51% 17 8 47% 14 4 29%
Deinococcus radiodurans AE002087 145 84 58% 172 112 65% 80 34 43% 37 11 30% 33 10 30% 38 9 24% 28 9 32% 29 6 21% 21 3 14% 18 4 22%
Deinococcus radiodurans AE001886 145 91 63% 172 129 75% 80 41 51% 37 16 43% 33 16 48% 38 9 24% 28 15 54% 30 15 50% 21 10 48% 18 9 50%
Enterococcus faecalis X79341 143 102 71% 184 136 74% 82 46 56% 35 26 74% 34 25 74% 38 13 34% 29 20 69% 33 20 61% 18 9 50% 17 6 35%
Erysipelothrix rhusiopathiae AB019250 145 87 60% 175 118 67% 84 44 52% 33 20 61% 34 15 44% 37 9 24% 27 12 44% 33 13 39% 17 9 53% 17 11 65%
Escherichia coli J01695 144 100 69% 181 129 71% 88 58 66% 37 26 70% 37 19 51% 39 15 38% 30 19 63% 30 23 77% 17 10 59% 17 10 59%
Flexibacter flexilis M62806 143 75 52% 164 100 61% 79 38 48% 28 6 21% 26 6 23% 31 6 19% 28 1 4% 27 0 0% 19 0 0% 18 0 0%
Frankia sp. M55343 150 100 67% 193 111 58% 96 43 45% 53 25 47% 39 26 67% 37 16 43% 33 14 42% 33 16 48% 27 17 63% 13 5 38%
Geobacillus stearothermophilus K02663 148 96 65% 183 121 66% 84 53 63% 36 31 86% 33 18 55% 35 13 37% 28 15 54% 32 19 59% 20 15 75% 16 8 50%
Haemophilus influenzae (operons A-F) U32742 U32745 U32755 U32847 U32697 U32707 143 84 59% 178 124 70% 86 50 58% 36 15 42% 35 8 23% 38 7 18% 30 8 27% 32 10 31% 17 9 53% 17 6 35%
Helicobacter pylori U27270 146 74 51% 175 97 55% 76 35 46% 35 16 46% 33 17 52% 32 18 56% 27 14 52% 33 18 55% 16 13 81% 18 7 39%
Heliobacterium chlorum NPA2 142 83 58% 176 116 66% 84 42 50% 41 25 61% 34 15 44% 37 7 19% 27 15 56% 38 30 79% 23 17 74% 22 16 73%
Klebsiella pneumoniae X87284 145 101 70% 180 123 68% 87 53 61% 36 20 56% 37 22 59% 39 22 56% 30 19 63% 31 18 58% 17 8 47% 17 7 41%
Lactobacillus delbrueckii X68426 143 89 62% 184 130 71% 83 54 65% 36 28 78% 33 13 39% 39 11 28% 26 13 50% 31 25 81% 19 17 89% 18 15 83%
Lactococcus lactis X68434 145 93 64% 180 96 53% 81 31 38% 37 14 38% 35 12 34% 39 8 21% 29 14 48% 33 16 48% 20 7 35% 17 0 0%
Leptospira interrogans X14249 146 83 57% 175 97 55% 90 49 54% 42 22 52% 31 12 39% 36 17 47% 30 11 37% 34 17 50% 19 15 79% 13 6 46%
Listeria monocytogenes X64533 139 85 61% 183 112 61% 85 37 44% 35 12 34% 34 13 38% 38 8 21% 29 14 48% 30 15 50% 22 16 73% 16 9 56%
Listeria monocytogenes X68420 144 94 65% 185 124 67% 87 46 53% 36 22 61% 34 23 68% 37 18 49% 30 20 67% 32 22 69% 22 15 68% 16 6 38%
Micrococcus luteus X06484 148 81 55% 193 131 68% 90 43 48% 45 20 44% 37 18 49% 36 9 25% 26 14 54% 35 12 34% 23 10 43% 16 2 13%
Mycobacterium leprae X56657 150 96 64% 189 124 66% 96 52 54% 48 33 69% 34 22 65% 35 16 46% 21 4 19% 34 16 47% 27 18 67% 22 11 50%
Mycobacterium tuberculosis Z73902 148 72 49% 195 96 49% 97 41 42% 51 14 27% 35 5 14% 35 0 0% 21 5 24% 32 10 31% 26 10 38% 24 8 33%
Mycoplasma genitalium U39694 144 70 49% 184 105 57% 86 34 40% 37 18 49% 31 17 55% 41 16 39% 29 15 52% 35 19 54% 18 7 39% 16 0 0%
Mycoplasma pneumoniae X68422 U00089 144 95 66% 182 129 71% 85 39 46% 37 13 35% 32 11 34% 40 12 30% 30 23 77% 32 19 59% 19 10 53% 15 7 47%
Myroides odoratus M62807 133 51 38% 153 67 44% 72 29 40% 26 10 38% 28 8 29% 32 3 9% 24 4 17% 28 5 18% 21 4 19% 17 0 0%
Neisseria gonorrhoeae X67293 143 88 62% 178 113 63% 84 41 49% 43 19 44% 33 11 33% 39 10 26% 26 12 46% 30 11 37% 17 6 35% 17 4 24%
Neisseria meningitidis X67300 143 85 59% 178 112 63% 85 34 40% 43 27 63% 33 18 55% 39 7 18% 26 8 31% 30 10 33% 17 4 24% 17 0 0%
Parachlamydia acanthamoebae Y07555 143 86 60% 180 113 63% 85 43 51% 43 23 53% 32 18 56% 34 15 44% 25 14 56% 34 19 56% 18 8 44% 16 4 25%
Pirellula marina X07408 138 83 60% 173 119 69% 84 48 57% 35 25 71% 32 17 53% 36 9 25% 23 13 57% 31 18 58% 19 12 63% 16 6 38%
Plesiomonas shigelloides X65487 135 75 56% 171 99 58% 81 35 43% 32 7 22% 33 14 42% 39 10 26% 27 5 19% 23 9 39% 18 8 44% 16 4 25%
Pseudomonas aeruginosa Y00432 142 91 64% 181 121 67% 88 41 47% 39 20 51% 33 20 61% 40 8 20% 28 3 11% 32 8 25% 17 3 18% 14 4 29%
Rhodobacter capsulatus X06485 141 89 63% 170 96 56% 88 44 50% 39 26 67% 38 26 68% 35 21 60% 26 17 65% 38 21 55% 22 11 50% 20 7 35%
Rhodobacter sphaeroides X53853 143 87 61% 169 109 64% 90 51 57% 42 29 69% 35 27 77% 37 23 62% 27 17 63% 38 26 68% 21 14 67% 18 11 61%
Rhodococcus erythropolis AF001265 148 98 66% 189 135 71% 94 45 48% 56 22 39% 41 17 41% 36 15 42% 27 12 44% 38 21 55% 25 17 68% 14 4 29%
Rhodopseudomonas palustris X71839 137 97 71% 168 130 77% 87 55 63% 40 23 58% 38 24 63% 37 19 51% 28 15 54% 42 20 48% 20 10 50% 15 5 33%
Rickettsia prowazekii AJ235270 135 86 64% 175 120 69% 88 57 65% 37 21 57% 35 20 57% 35 15 43% 27 8 30% 38 22 58% 22 12 55% 14 8 57%
Rickettsia rickettsii U11022 133 90 68% 173 127 73% 87 55 63% 37 22 59% 35 21 60% 32 14 44% 26 10 38% 38 22 58% 21 13 62% 14 8 57%
Ruminobacter amylophilus X06765 143 78 55% 173 101 58% 79 30 38% 38 16 42% 34 14 41% 38 11 29% 30 12 40% 30 15 50% 17 4 24% 14 0 0%
Simkania negevensis U68460 141 82 58% 178 115 65% 87 44 51% 43 17 40% 31 9 29% 31 6 19% 24 14 58% 34 16 47% 17 9 53% 18 7 39%
Staphylococcus aureus X68425 147 85 58% 184 120 65% 86 45 52% 36 25 69% 34 28 82% 38 14 37% 29 14 48% 30 13 43% 22 11 50% 16 7 44%
Staphylococcus carnosus X68419 146 88 60% 186 117 63% 86 33 38% 36 23 64% 34 26 76% 37 15 41% 29 15 52% 31 15 48% 22 10 45% 17 5 29%
Streptomyces ambofaciens M27245 150 94 63% 187 127 68% 100 54 54% 49 27 55% 38 19 50% 32 10 31% 29 21 72% 38 20 53% 23 14 61% 18 8 44%
Streptomyces griseus X61478 151 82 54% 187 110 59% 98 43 44% 49 20 41% 37 12 32% 38 14 37% 28 22 79% 37 16 43% 24 14 58% 16 7 44%
Synechococcus sp. PCC 6301 X00512 143 85 59% 177 99 56% 82 42 51% 32 19 59% 32 9 28% 36 13 36% 25 13 52% 33 23 70% 18 8 44% 19 2 11%
Thermotoga maritima M67498 152 99 65% 180 122 68% 97 67 69% 42 29 69% 34 19 56% 45 23 51% 33 23 70% 33 27 82% 19 15 79% 13 10 77%
Thermus aquaticus NPA 154 105 68% 185 140 76% 83 46 55% 40 22 55% 32 14 44% 34 4 12% 20 11 55% 28 21 75% 25 18 72% 24 14 58%
Thermus thermophilus X12612 150 100 67% 181 140 77% 81 41 51% 39 21 54% 32 20 63% 29 10 34% 20 11 55% 27 17 63% 24 22 92% 24 21 88%
Treponema pallidum (rRNA A) AE001204 147 69 47% 186 87 47% 89 32 36% 34 1 3% 32 1 3% 36 2 6% 31 8 26% 31 4 13% 22 3 14% 15 0 0%
Tropheryma whipplei AF190687 144 82 57% 182 104 57% 90 30 33% 50 26 52% 36 11 31% 35 9 26% 27 14 52% 32 16 50% 19 5 26% 14 5 36%
Eukaryotic Chloroplast   3-10 11-20 21-30 31-40 41-50 51-60 61-70 71-80 81-90 91-100
C1 P A C P A C P A C P A C P A C P A C P A C P A C P A C P A
Alnus incana M75719 M75722 141 91 65% 171 105 61% 79 47 59% 31 21 68% 31 15 48% 35 14 40% 28 8 29% 31 18 58% 15 11 73% 14 4 29%
Astasia longa X14386 142 40 28% 171 62 36% 93 23 25% 39 7 18% 31 4 13% 34 2 6% 24 7 29% 24 3 13% 19 0 0% 19 0 0%
Chlamydomonas eugametos Z17234 140 60 43% 174 63 36% 95 36 38% 39 10 26% 40 8 20% 34 10 29% 22 8 36% 31 16 52% 17 5 29% 16 0 0%
Chlamydomonas frankii L43352 X68905 X68906 X68907 X68908 X68909 Z17230 139 66 47% 173 81 47% 88 31 35% 34 10 29% 31 11 35% 30 9 30% 21 1 5% 30 2 7% 18 0 0% 13 0 0%
Chlamydomonas geitleri L43353 X68891 X68892 Z15153 136 67 49% 175 102 58% 96 47 49% 38 8 21% 31 5 16% 32 10 31% 22 8 36% 31 15 48% 17 8 47% 12 2 17%
Chlamydomonas gelatinosa Z15151 139 72 52% 176 93 53% 89 45 51% 32 13 41% 32 15 47% 31 16 52% 22 8 36% 32 17 53% 16 8 50% 11 2 18%
Chlamydomonas humicola L42989 X68921 X68922 Z17235 139 77 55% 174 96 55% 87 31 36% 35 7 20% 32 6 19% 30 9 30% 22 8 36% 31 17 55% 18 9 50% 10 2 20%
Chlamydomonas indica X68893 X68894 X68895 X68896 X68897 X68898 Z17228 139 61 44% 174 65 37% 95 36 38% 39 10 26% 40 8 20% 34 10 29% 22 8 36% 31 16 52% 17 5 29% 15 0 0%
Chlamydomonas iyengarii L43354 X68885 X68886 Z15148 137 73 53% 178 99 56% 88 42 48% 32 14 44% 33 10 30% 32 14 44% 23 9 39% 31 17 55% 13 9 69% 11 6 55%
Chlamydomonas komma L43502 X68927 X68928 X68929 Z17237 140 72 51% 176 76 43% 91 34 37% 32 15 47% 30 21 70% 32 16 50% 21 8 38% 33 23 70% 16 12 75% 11 6 55%
Chlamydomonas mexicana L49148 X68910 X68911 X68912 Z17231 140 73 52% 171 87 51% 91 47 52% 39 21 54% 34 17 50% 30 12 40% 23 10 43% 31 14 45% 16 8 50% 11 0 0%
Chlamydomonas pallidostigmatica L43503 X68899 X68900 X68901 X68902 X68903 X68904 Z17229 140 87 62% 173 108 62% 94 55 59% 42 28 67% 34 21 62% 31 22 71% 22 9 41% 33 15 45% 18 9 50% 14 8 57%
Chlamydomonas peterfii L43538 X68887 X68888 Z15149 141 67 48% 177 108 61% 83 36 43% 32 6 19% 30 12 40% 31 15 48% 25 13 52% 34 16 47% 16 8 50% 12 2 17%
Chlamydomonas pitschmannii Z15152 137 83 61% 166 93 56% 96 46 48% 39 17 44% 36 9 25% 32 5 16% 22 6 27% 31 14 45% 17 9 53% 12 6 50%
Chlamydomonas reinhardtii X15727 X16686 X16687 138 74 54% 179 108 60% 92 33 36% 33 13 39% 32 13 41% 33 13 39% 24 8 33% 32 19 59% 20 10 50% 13 4 31%
Chlamydomonas sp. SAG 66.72 L43539 X68923 X68924 X68925 X68926 Z17236 132 67 51% 175 98 56% 97 44 45% 39 15 38% 34 8 24% 33 9 27% 27 12 44% 33 22 67% 23 15 65% 15 9 60%
Chlamydomonas starrii L43504 X68889 X68890 Z15150 137 65 47% 179 99 55% 88 41 47% 32 13 41% 33 6 18% 32 10 31% 23 9 39% 31 17 55% 14 9 64% 11 6 55%
Chlamydomonas zebra L43356 Z17233 138 75 54% 175 92 53% 90 45 50% 32 19 59% 31 18 58% 31 16 52% 22 8 36% 31 19 61% 17 8 47% 11 2 18%
Chlorella ellipsoidea M36158 140 86 61% 170 101 59% 79 38 48% 32 16 50% 26 14 54% 33 21 64% 26 13 50% 38 13 34% 16 8 50% 18 3 17%
Conopholis americana X59768 X58863 132 57 43% 165 74 45% 80 27 34% 26 2 8% 34 0 0% 33 0 0% 29 0 0% 29 0 0% 15 0 0% 12 0 0%
Epifagus virginiana X62099 138 63 46% 164 65 40% 82 35 43% 29 12 41% 34 3 9% 30 0 0% 31 2 6% 29 4 14% 17 6 35% 12 0 0%
Euglena gracilis X12890 X13310 140 70 50% 171 90 53% 84 35 42% 36 15 42% 34 11 32% 36 8 22% 21 3 14% 30 16 53% 25 11 44% 18 7 39%
Marchantia polymorpha X04465 136 75 55% 171 81 47% 82 35 43% 30 12 40% 27 8 30% 36 15 42% 30 13 43% 33 20 61% 17 13 76% 14 4 29%
Nicotiana tabacum Z00044 141 72 51% 174 94 54% 81 44 54% 31 18 58% 31 7 23% 35 10 29% 28 7 25% 30 9 30% 18 6 33% 14 0 0%
Odontella sinensis Z67753 141 73 52% 171 97 57% 84 39 46% 31 10 32% 34 8 24% 31 5 16% 25 10 40% 29 10 34% 18 5 28% 19 0 0%
Oryza sativa X15901 139 61 44% 168 62 37% 90 26 29% 35 15 43% 34 6 18% 35 7 20% 32 9 28% 36 8 22% 15 1 7% 15 0 0%
Palmaria palmata Z18289 139 76 55% 171 107 63% 83 40 48% 33 17 52% 31 16 52% 33 11 33% 25 7 28% 32 11 34% 20 11 55% 20 4 20%
Pisum sativum X55033 M37430 140 67 48% 173 80 46% 79 38 48% 31 7 23% 28 9 32% 37 6 16% 28 6 21% 30 8 27% 19 8 42% 14 2 14%
Plasmodium falciparum (plastid-like) X61660 X95275 130 33 25% 156 46 29% 88 13 15% 31 10 32% 27 11 41% 36 6 17% 21 3 14% 31 1 3% 29 5 17% 17 5 29%
Toxoplasma gondii (plastid-like) U18086 122 49 40% 158 81 51% 84 35 42% 28 10 36% 27 13 48% 33 13 39% 28 9 32% 30 18 60% 16 12 75% 7 3 43%
Zea mays Z00028 138 65 47% 166 78 47% 90 43 48% 36 15 42% 34 7 21% 38 10 26% 36 19 53% 36 18 50% 17 11 65% 14 0 0%
Eukaryotic Mitochondrion   3-10 11-20 21-30 31-40 41-50 51-60 61-70 71-80 81-90 91-100
C1 P A C P A C P A C P A C P A C P A C P A C P A C P A C P A
Acanthamoeba castellanii U03732 130 43 33% 151 67 44% 77 30 39% 34 13 38% 28 10 36% 38 11 29% 25 8 32% 30 10 33% 15 8 53% 16 7 44%
Aedes albopictus X01078 64 15 23% 84 21 25% 36 10 28% 15 12 80% 14 9 64% 8 1 13% 4 0 0% 6 0 0% 6 0 0% 11 0 0%
Albinaria caerulea X83390 56 19 34% 71 25 35% 24 3 13% 1 0 0% 5 2 40% 10 9 90% 8 5 63% 2 0 0% 1 0 0% 7 5 71%
Albinaria turrita X71393 X71394 57 10 18% 69 13 19% 22 3 14% 0 0 0% 4 1 25% 11 4 36% 9 0 0% 5 0 0% 0 0 0% 8 0 0%
Allomyces macrogynus U41288 150 74 49% 162 88 54% 79 41 52% 38 18 47% 27 8 30% 19 4 21% 19 10 53% 21 3 14% 13 1 8% 15 7 47%
Antilocapra americana M55540 73 35 48% 82 44 54% 39 20 51% 14 7 50% 14 4 29% 13 0 0% 12 0 0% 2 0 0% 1 1 100% 11 3 27%
Apis mellifera L06178 69 17 25% 77 17 22% 32 13 41% 13 6 46% 17 10 59% 6 1 17% 4 0 0% 5 0 0% 6 0 0% 7 0 0%
Artemia salina X12965 49 8 16% 74 19 26% 31 11 35% 9 0 0% 9 0 0% 7 0 0% 8 0 0% 10 0 0% 5 0 0% 5 0 0%
Ascaris suum X54253 43 8 19% 58 10 17% 16 0 0% 9 0 0% 7 0 0% 6 0 0% 6 0 0% 6 0 0% 6 2 33% 9 5 56%
Aspergillus nidulans J01390 X06961 112 45 40% 125 51 41% 64 25 39% 25 12 48% 22 17 77% 33 23 70% 32 15 47% 25 16 64% 18 15 83% 22 17 77%
Balaenoptera musculus X72204 70 32 46% 82 29 35% 38 19 50% 12 5 42% 15 7 47% 12 9 75% 11 3 27% 2 0 0% 2 0 0% 12 4 33%
Bos taurus J01394 70 13 19% 81 26 32% 40 11 28% 15 1 7% 13 6 46% 13 5 38% 12 4 33% 2 0 0% 1 0 0% 11 0 0%
Cacozeliana lacertina AF101007 69 25 36% 78 35 45% 36 7 19% 15 4 27% 13 2 15% 10 8 80% 8 5 63% 4 2 50% 2 2 100% 6 2 33%
Caenorhabditis elegans X54252 49 11 22% 58 15 26% 17 5 29% 10 0 0% 6 4 67% 6 6 100% 6 0 0% 6 0 0% 6 3 50% 8 4 50%
Cafeteria roenbergensis AF193903 134 75 56% 137 87 64% 77 34 44% 31 13 42% 35 17 49% 37 18 49% 20 13 65% 33 8 24% 11 4 36% 10 1 10%
Capra hircus M55541 65 27 42% 79 47 59% 34 17 50% 9 6 67% 14 11 79% 12 8 67% 12 4 33% 2 0 0% 1 0 0% 7 0 0%
Cepaea nemoralis U23045 50 16 32% 68 25 37% 15 1 7% 0 0 0% 6 0 0% 10 0 0% 4 0 0% 6 0 0% 8 0 0% 7 0 0%
Cervus unicolor M35875 66 20 30% 75 38 51% 36 20 56% 8 6 75% 14 8 57% 13 7 54% 11 4 36% 2 0 0% 0 0 0% 7 0 0%
Chlamydomonas eugametos AF008237 88 28 32% 105 42 40% 56 24 43% 15 6 40% 12 0 0% 22 8 36% 16 8 50% 13 6 46% 8 1 13% 14 0 0%
Chlamydomonas reinhardtii X54860 U03843 84 36 43% 84 34 40% 49 27 55% 20 9 45% 13 5 38% 26 9 35% 18 10 56% 21 14 67% 11 6 55% 10 0 0%
Chondrus crispus Z46224 Z47547 126 48 38% 131 71 54% 67 27 40% 36 17 47% 31 16 52% 40 12 30% 22 8 36% 28 13 46% 10 8 80% 7 3 43%
Crithidia fasciculata X02548 31 0 0% 34 1 3% 16 1 6% 6 0 0% 6 0 0% 5 0 0% 3 0 0% 0 0 0% 1 0 0% 6 0 0%
Crithidia oncopelti X51736 27 0 0% 38 0 0% 13 0 0% 3 0 0% 6 0 0% 5 0 0% 3 0 0% 0 0 0% 3 0 0% 5 0 0%
Crossostoma lacustre M91245 72 28 39% 84 43 51% 37 18 49% 7 1 14% 8 3 38% 21 15 71% 13 7 54% 2 0 0% 1 1 100% 8 5 63%
Damaliscus pygargus M86499 72 34 47% 82 43 52% 39 21 54% 13 12 92% 14 8 57% 13 9 69% 12 4 33% 2 0 0% 3 0 0% 11 0 0%
Dictyostelium discoideum D16466 117 42 36% 146 49 34% 66 22 33% 27 8 30% 26 7 27% 30 13 43% 21 5 24% 29 8 28% 20 8 40% 12 3 25%
Didelphis virginiana Z29573 69 26 38% 82 44 54% 39 14 36% 15 0 0% 16 3 19% 14 8 57% 11 7 64% 2 0 0% 4 0 0% 11 0 0%
Drosophila melanogaster X53506 64 17 27% 77 25 32% 34 6 18% 18 7 39% 16 5 31% 7 0 0% 4 0 0% 7 0 0% 7 0 0% 10 4 40%
Drosophila yakuba X03240 63 16 25% 76 25 33% 31 3 10% 17 7 41% 14 4 29% 7 0 0% 4 0 0% 6 0 0% 3 1 33% 6 4 67%
Equus caballus X79547 69 26 38% 85 40 47% 39 13 33% 15 7 47% 14 9 64% 14 10 71% 12 7 58% 5 0 0% 3 0 0% 10 3 30%
Euhadra herklotsi Z71693 60 14 23% 66 19 29% 15 3 20% 2 0 0% 6 1 17% 8 3 38% 6 0 0% 1 0 0% 2 0 0% 11 3 27%
Gallus gallus X52392 69 15 22% 76 28 37% 34 12 35% 7 2 29% 12 4 33% 19 6 32% 11 0 0% 5 0 0% 2 0 0% 15 0 0%
Homo sapiens D38112 70 21 30% 80 42 53% 38 19 50% 8 6 75% 17 8 47% 12 4 33% 11 3 27% 2 0 0% 5 0 0% 8 0 0%
Hydropotes inermis M35876 65 33 51% 79 51 65% 34 22 65% 8 6 75% 14 8 57% 13 8 62% 11 4 36% 2 0 0% 0 0 0% 7 3 43%
Katharina tunicata U09810 55 8 15% 74 17 23% 36 7 19% 17 5 29% 13 1 8% 8 0 0% 3 0 0% 6 0 0% 4 0 0% 4 0 0%
Leishmania tarentolae X02354 31 0 0% 36 0 0% 16 0 0% 4 0 0% 7 1 14% 4 3 75% 3 3 100% 0 0 0% 3 0 0% 6 0 0%
Leptomonas sp. J03814 30 0 0% 35 0 0% 11 0 0% 5 0 0% 7 0 0% 4 0 0% 3 0 0% 0 0 0% 2 0 0% 6 0 0%
Locusta migratoria X80245 64 9 14% 75 18 24% 31 6 19% 16 9 56% 10 7 70% 8 1 13% 4 0 0% 4 0 0% 4 0 0% 10 4 40%
Loligo bleekeri AB009838 61 12 20% 90 22 24% 39 9 23% 13 2 15% 7 0 0% 5 0 0% 4 0 0% 7 0 0% 4 0 0% 6 0 0%
Lumbricus terrestris U24570 58 19 33% 76 35 46% 26 7 27% 4 2 50% 6 5 83% 9 9 100% 6 2 33% 3 0 0% 8 0 0% 8 4 50%
Marchantia polymorpha M68929 123 62 50% 147 76 52% 78 35 45% 44 16 36% 40 8 20% 34 9 26% 23 14 61% 26 22 85% 19 11 58% 13 2 15%
Meloidogyne javanica L76261 29 0 0% 44 5 11% 11 1 9% 4 0 0% 3 0 0% 5 0 0% 10 0 0% 8 0 0% 4 0 0% 2 0 0%
Muntiacus reevesi M35877 73 19 26% 90 25 28% 45 8 18% 13 0 0% 15 4 27% 18 4 22% 14 0 0% 3 0 0% 3 0 0% 8 0 0%
Mus musculus J01420 72 23 32% 83 43 52% 40 14 35% 16 5 31% 16 2 13% 11 5 45% 11 3 27% 2 0 0% 4 0 0% 9 0 0%
Mytilus edulis M83756 71 16 23% 82 25 30% 26 5 19% 12 6 50% 9 1 11% 12 0 0% 4 0 0% 4 0 0% 3 0 0% 4 0 0%
Neurospora crassa X55443 115 65 57% 129 70 54% 67 33 49% 32 23 72% 21 10 48% 26 9 35% 19 13 68% 17 4 24% 11 0 0% 13 4 31%
Ochromonas danica AF287134 135 61 45% 139 70 50% 74 39 53% 36 12 33% 36 9 25% 30 10 33% 27 10 37% 32 14 44% 12 11 92% 10 3 30%
Odocoileus virginianus M35874 69 29 42% 83 40 48% 31 17 55% 8 1 13% 14 7 50% 13 4 31% 11 0 0% 2 0 0% 1 0 0% 7 0 0%
Oenothera berteriana X02559 126 52 41% 134 56 42% 83 31 37% 33 13 39% 33 11 33% 34 6 18% 22 8 36% 22 7 32% 14 5 36% 7 0 0%
Pan troglodytes D38113 69 23 33% 79 39 49% 38 16 42% 9 2 22% 16 6 38% 11 4 36% 11 3 27% 2 0 0% 5 0 0% 7 0 0%
Paracentrotus lividus J04815 66 27 41% 74 33 45% 29 9 31% 6 0 0% 12 2 17% 16 5 31% 19 6 32% 11 4 36% 9 0 0% 14 3 21%
Paracrostoma paludiformis AF101008 59 20 34% 79 31 39% 35 10 29% 19 2 11% 14 0 0% 14 0 0% 6 0 0% 2 0 0% 2 1 50% 9 5 56%
Paramecium primaurelia K00634 104 38 37% 125 57 46% 58 25 43% 24 4 17% 39 6 15% 40 7 18% 16 7 44% 7 1 14% 11 0 0% 11 0 0%
Paramecium tetraurelia K01749 125 50 40% 134 74 55% 63 36 57% 27 13 48% 48 22 46% 38 15 39% 18 10 56% 8 5 63% 6 3 50% 10 7 70%
Pecten maximus X92688 57 14 25% 76 22 29% 38 4 11% 8 0 0% 5 0 0% 18 0 0% 8 0 0% 10 0 0% 7 0 0% 10 0 0%
Penicillium chrysogenum D13859 S56867 101 49 49% 136 71 52% 61 22 36% 29 17 59% 24 6 25% 38 5 13% 23 3 13% 14 1 7% 16 5 31% 17 3 18%
Phoca vitulina X63726 69 35 51% 84 51 61% 37 12 32% 14 4 29% 13 2 15% 13 4 31% 11 4 36% 3 0 0% 4 0 0% 9 4 44%
Physarum polycephalum AF080601 120 32 27% 128 53 41% 70 30 43% 24 10 42% 26 12 46% 26 9 35% 34 12 35% 29 9 31% 18 3 17% 5 4 80%
Pichia canadensis D31785 102 45 44% 122 58 48% 72 24 33% 39 13 33% 16 10 63% 33 14 42% 27 9 33% 26 8 31% 18 7 39% 22 14 64%
Podospora anserina X14735 X55026 107 64 60% 129 72 56% 72 28 39% 35 14 40% 26 12 46% 33 15 45% 25 15 60% 25 14 56% 13 5 38% 13 4 31%
Porphyra purpurea AF114794 117 52 44% 132 59 45% 76 24 32% 35 14 40% 34 15 44% 38 11 29% 25 7 28% 21 9 43% 15 5 33% 7 0 0%
Prototheca wickerhamii X68722 126 77 61% 157 104 66% 77 50 65% 37 28 76% 39 34 87% 33 14 42% 28 7 25% 29 14 48% 15 11 73% 10 2 20%
Pylaiella littoralis Z48620 128 48 38% 139 56 40% 63 18 29% 35 13 37% 30 10 33% 25 1 4% 23 6 26% 30 8 27% 17 9 53% 19 6 32%
Pyura stolonifera X74513 46 9 20% 62 18 29% 15 5 33% 10 0 0% 5 0 0% 4 0 0% 4 0 0% 6 0 0% 5 0 0% 3 0 0%
Rana catesbeiana X12841 65 35 54% 80 52 65% 31 19 61% 10 1 10% 11 4 36% 16 8 50% 8 7 88% 2 0 0% 2 1 50% 7 5 71%
Rattus norvegicus J01438 61 9 15% 70 26 37% 32 7 22% 6 0 0% 15 0 0% 12 5 42% 12 3 25% 2 0 0% 1 0 0% 8 0 0%
Reclinomonas americana AF007261 134 63 47% 168 84 50% 78 40 51% 40 28 70% 32 16 50% 32 8 25% 21 10 48% 37 13 35% 20 8 40% 16 0 0%
Rhizopus stolonifer NPA 128 72 56% 135 76 56% 70 29 41% 30 17 57% 32 21 66% 39 26 67% 29 21 72% 12 5 42% 4 0 0% 12 5 42%
Rhodomonas salina AF288090 126 46 37% 139 65 47% 73 31 42% 39 14 36% 29 16 55% 38 19 50% 25 11 44% 26 12 46% 24 4 17% 11 0 0%
Saccharomyces cerevisiae J01527 99 30 30% 107 30 28% 72 19 26% 32 5 16% 24 5 21% 28 3 11% 27 3 11% 24 5 21% 30 12 40% 18 4 22%
Sceloporus undulatus L28075 74 22 30% 80 37 46% 35 8 23% 16 5 31% 8 1 13% 7 0 0% 5 0 0% 3 0 0% 3 0 0% 15 0 0%
Schizosaccharomyces pombe X06597 127 56 44% 139 65 47% 66 31 47% 38 18 47% 34 18 53% 36 17 47% 18 11 61% 15 2 13% 15 5 33% 14 6 43%
Strongylocentrotus purpuratus X12631 57 17 30% 65 23 35% 21 6 29% 4 0 0% 6 3 50% 12 8 67% 13 4 31% 7 0 0% 5 2 40% 10 4 40%
Suillus sinuspaulianus L47585 105 40 38% 131 57 44% 80 21 26% 30 5 17% 27 4 15% 36 16 44% 31 16 52% 16 4 25% 12 0 0% 13 5 38%
Tetrahymena pyriformis M58010 118 51 43% 146 71 49% 76 42 55% 30 12 40% 31 16 52% 38 15 39% 24 8 33% 20 5 25% 5 0 0% 5 1 20%
Tetrahymena pyriformis M58011 118 45 38% 143 68 48% 71 38 54% 29 12 41% 32 20 63% 38 19 50% 25 8 32% 19 5 26% 5 0 0% 7 3 43%
Tragulus napu M55539 65 23 35% 86 42 49% 33 18 55% 7 6 86% 14 7 50% 12 9 75% 12 4 33% 2 0 0% 1 0 0% 8 4 50%
Triticum aestivum Z11889 Z14078 125 58 46% 139 67 48% 85 41 48% 38 17 45% 30 11 37% 30 7 23% 20 10 50% 22 8 36% 14 5 36% 6 0 0%
Trypanosoma brucei X02547 29 3 10% 36 6 17% 16 3 19% 3 0 0% 6 0 0% 5 0 0% 3 0 0% 0 0 0% 3 0 0% 5 0 0%
Xenopus laevis M10217 71 26 37% 90 45 50% 42 24 57% 10 5 50% 10 4 40% 18 6 33% 10 4 40% 6 0 0% 4 0 0% 9 0 0%
Zea mays K01868 122 37 30% 141 47 33% 85 30 35% 40 18 45% 28 7 25% 28 2 7% 21 5 24% 25 7 28% 14 5 36% 6 0 0%
Eukaryotic Nuclear   3-10 11-20 21-30 31-40 41-50 51-60 61-70 71-80 81-90 91-100
C1 P A C P A C P A C P A C P A C P A C P A C P A C P A C P A
Aedes albopictus L22060 146 65 45% 186 102 55% 98 51 52% 51 26 51% 50 25 50% 38 15 39% 25 12 48% 22 10 45% 21 11 52% 13 8 62%
Arabidopsis thaliana X52320 159 74 47% 181 99 55% 115 42 37% 47 19 40% 45 21 47% 51 21 41% 30 12 40% 26 11 42% 19 19 100% 13 8 62%
Babesia bigemina NPA 146 48 33% 162 78 48% 99 30 30% 33 12 36% 35 9 26% 40 7 18% 21 7 33% 24 7 29% 13 6 46% 14 1 7%
Brassica napus D10840 161 69 43% 185 88 48% 114 45 39% 46 25 54% 44 19 43% 53 19 36% 31 17 55% 26 12 46% 18 8 44% 11 3 27%
Caenorhabditis elegans X03680 169 94 56% 208 129 62% 115 64 56% 53 32 60% 37 21 57% 47 17 36% 34 22 65% 33 24 73% 18 18 100% 11 9 82%
Candida albicans L28817 167 65 39% 190 91 48% 105 26 25% 55 20 36% 56 25 45% 41 15 37% 33 12 36% 34 17 50% 19 11 58% 10 2 20%
Chlorella ellipsoidea D17810 D13340 169 86 51% 185 110 59% 107 54 50% 50 30 60% 47 18 38% 50 18 36% 28 10 36% 28 17 61% 19 19 100% 17 8 47%
Crithidia fasciculata Y00055 140 68 49% 188 102 54% 117 68 58% 54 26 48% 27 11 41% 29 5 17% 24 9 38% 22 8 36% 15 5 33% 7 2 29%
Dictyostelium discoideum X00601 V00189 127 61 48% 154 92 60% 95 54 57% 49 32 65% 43 26 60% 43 29 67% 20 11 55% 30 16 53% 17 15 88% 10 7 70%
Didymium iridis X60210 161 63 39% 192 92 48% 123 49 40% 48 17 35% 51 17 33% 40 21 53% 30 18 60% 30 16 53% 22 8 36% 12 7 58%
Drosophila melanogaster M21017 X15707 145 59 41% 189 96 51% 96 48 50% 57 32 56% 44 19 43% 45 21 47% 36 20 56% 29 19 66% 25 16 64% 16 7 44%
Encephalitozoon cuniculi AJ005581 117 40 34% 141 57 40% 63 27 43% 30 20 67% 32 12 38% 24 7 29% 21 10 48% 24 14 58% 19 9 47% 6 0 0%
Entamoeba histolytica X65163 159 77 48% 175 105 60% 104 53 51% 42 25 60% 34 18 53% 46 19 41% 28 8 29% 28 8 29% 19 9 47% 16 12 75%
Euglena gracilis X53361 173 54 31% 188 70 37% 107 27 25% 61 7 11% 36 0 0% 45 4 9% 23 3 13% 32 2 6% 22 0 0% 9 0 0%
Filobasidiella neoformans var. bacillispora L14067 171 92 54% 193 129 67% 113 50 44% 56 33 59% 49 34 69% 44 20 45% 31 16 52% 34 13 38% 21 14 67% 14 3 21%
Fragaria x ananassa X15589 X58118 160 51 32% 176 63 36% 108 36 33% 49 14 29% 42 18 43% 51 9 18% 29 2 7% 28 7 25% 18 10 56% 14 2 14%
Giardia ardeae X58290 143 48 34% 169 77 46% 87 28 32% 35 13 37% 39 14 36% 29 8 28% 22 5 23% 31 3 10% 20 3 15% 9 5 56%
Giardia intestinalis X52949 140 51 36% 167 63 38% 92 28 30% 35 11 31% 40 12 30% 34 4 12% 18 9 50% 26 6 23% 25 9 36% 13 10 77%
Giardia muris X65063 140 52 37% 170 71 42% 82 42 51% 31 10 32% 38 7 18% 34 8 24% 23 11 48% 28 15 54% 15 14 93% 10 6 60%
Herdmania momus X53538 158 62 39% 200 78 39% 97 23 24% 48 13 27% 36 13 36% 48 13 27% 34 10 29% 26 13 50% 18 14 78% 18 7 39%
Hexamita inflata NPA 133 70 53% 144 76 53% 89 48 54% 38 21 55% 31 12 39% 29 10 34% 23 10 43% 20 15 75% 10 10 100% 9 4 44%
Homo sapiens J01866 M11167 148 49 33% 197 90 46% 99 26 26% 43 16 37% 32 11 34% 40 9 23% 29 5 17% 29 13 45% 19 15 79% 12 2 17%
Lycopersicon esculentum X13557 X52265 165 81 49% 186 88 47% 115 51 44% 46 23 50% 43 16 37% 55 22 40% 36 19 53% 24 17 71% 18 14 78% 13 8 62%
Microsporidium 57864 U90885 116 41 35% 152 62 41% 59 22 37% 21 4 19% 30 9 30% 28 9 32% 12 2 17% 17 4 24% 18 3 17% 11 2 18%
Mucor racemosus M26190 154 95 62% 180 117 65% 101 52 51% 43 19 44% 38 15 39% 51 18 35% 34 12 35% 35 15 43% 14 7 50% 16 5 31%
Mus musculus J01871 X00525 150 48 32% 191 77 40% 104 26 25% 44 5 11% 36 11 31% 40 12 30% 25 3 12% 32 11 34% 22 14 64% 12 6 50%
Naegleria gruberi Thesis, Mullican J. 159 94 59% 176 111 63% 98 43 44% 48 25 52% 46 22 48% 40 18 45% 29 10 34% 26 13 50% 23 13 57% 16 12 75%
Nosema apis U76706 115 53 46% 148 78 53% 58 26 45% 23 10 43% 30 14 47% 26 16 62% 14 4 29% 17 11 65% 16 13 81% 14 7 50%
Nosema apis U97150 115 36 31% 148 64 43% 58 19 33% 23 6 26% 32 9 28% 26 8 31% 15 2 13% 21 9 43% 19 5 26% 10 2 20%
Oryza sativa M11585 M16845 M35384 M82048 M19228 169 60 36% 186 80 43% 114 35 31% 44 22 50% 48 27 56% 51 25 49% 29 20 69% 29 20 69% 19 14 74% 11 6 55%
Physarum polycephalum V01159 V01160 161 62 39% 181 87 48% 110 49 45% 60 31 52% 48 15 31% 46 5 11% 30 1 3% 26 3 12% 25 9 36% 13 0 0%
Phytophthora megasperma X75631 X75632 165 95 58% 199 128 64% 119 69 58% 56 35 63% 38 28 74% 44 26 59% 30 16 53% 32 22 69% 19 13 68% 16 6 38%
Plasmodium falciparum (A gene) U21939 153 77 50% 203 126 62% 123 78 63% 64 38 59% 63 31 49% 32 7 22% 23 8 35% 33 19 58% 26 16 62% 18 8 44%
Plasmodium falciparum (S gene) U48228 149 59 40% 204 81 40% 115 55 48% 78 46 59% 75 27 36% 45 9 20% 32 11 34% 27 12 44% 29 21 72% 16 9 56%
Plasmodium vivax (A gene) NPA 157 82 52% 206 112 54% 124 54 44% 71 36 51% 56 29 52% 33 9 27% 24 9 38% 31 11 35% 25 13 52% 18 6 33%
Plasmodium vivax (O gene) NPA 142 69 49% 179 84 47% 106 48 45% 66 35 53% 63 30 48% 45 17 38% 16 4 25% 26 13 50% 22 11 50% 13 7 54%
Plasmodium vivax (S gene) NPA 111 39 35% 148 50 34% 75 18 24% 58 19 33% 54 15 28% 50 6 12% 22 1 5% 20 8 40% 13 9 69% 18 8 44%
Pneumocystis carinii M86760 168 92 55% 195 114 58% 109 47 43% 49 28 57% 48 28 58% 48 21 44% 33 20 61% 35 18 51% 20 14 70% 14 5 36%
Prorocentrum micans M14649 M19230 X15973 154 48 31% 176 79 45% 96 36 38% 41 13 32% 38 17 45% 44 17 39% 22 9 41% 32 20 63% 17 16 94% 18 5 28%
Rattus norvegicus J01881 V01270 J01438 116 36 31% 150 68 45% 79 19 24% 31 10 32% 25 13 52% 30 10 33% 19 8 42% 19 13 68% 11 8 73% 8 3 38%
Saccharomyces cerevisiae U53879 162 78 48% 201 125 62% 112 52 46% 55 39 71% 50 29 58% 52 23 44% 35 19 54% 34 16 47% 23 17 74% 15 5 33%
Schizosaccharomyces japonicus Z32848 161 74 46% 193 104 54% 114 51 45% 49 22 45% 54 32 59% 44 21 48% 34 20 59% 34 13 38% 19 7 37% 15 3 20%
Schizosaccharomyces pombe J01359 Z19136 X51920 163 70 43% 199 107 54% 116 48 41% 54 22 41% 45 21 47% 54 22 41% 29 9 31% 37 15 41% 23 13 57% 17 11 65%
Sinapis alba X15915 X57137 165 87 53% 188 94 50% 111 54 49% 46 21 46% 44 19 43% 56 22 39% 32 19 59% 26 10 38% 18 8 44% 13 4 31%
Tetrahymena thermophila X54512 155 88 57% 188 106 56% 108 63 58% 42 22 52% 47 30 64% 51 24 47% 36 20 56% 30 12 40% 24 10 42% 24 7 29%
Theileria parva L28036 L28998 L26332 L26331 144 68 47% 174 101 58% 91 44 48% 40 22 55% 40 21 53% 42 19 45% 25 15 60% 29 21 72% 18 13 72% 10 2 20%
Toxoplasma gondii (P) X75453 154 67 44% 178 92 52% 113 57 50% 45 30 67% 36 26 72% 47 34 72% 28 18 64% 27 19 70% 22 20 91% 14 11 79%
Trepomonas agilis AF015455 111 45 41% 130 57 44% 72 31 43% 30 12 40% 25 2 8% 22 7 32% 19 7 37% 19 12 63% 17 8 47% 14 3 21%
Trypanosoma brucei X05682 X14553 X04986 135 46 34% 177 66 37% 118 30 25% 56 9 16% 34 8 24% 28 7 25% 23 6 26% 25 8 32% 13 5 38% 8 2 25%
Vairimorpha necatrix NPA 113 54 48% 155 75 48% 63 25 40% 30 6 20% 33 7 21% 29 13 45% 14 5 36% 17 6 35% 18 15 83% 10 5 50%
Xenopus laevis X59734 151 59 39% 194 77 40% 110 36 33% 47 9 19% 43 16 37% 39 10 26% 33 13 39% 26 14 54% 21 17 81% 15 6 40%
Zea mays NPA 117 44 38% 137 49 36% 82 26 32% 28 8 29% 30 12 40% 32 7 22% 19 3 16% 21 7 33% 10 9 90% 7 2 29%
  1. C, Number of comparative, canonical base-pairs (G-C,C-G,A-U,U-A,G-U,U-G); P, Number of base-pairs predicted in the MFold 3.1 optimal structure prediction that match comparative, canonical base-pairs; A, Accuracy of base-pair predictions in the MFold 3.1 optimal structure prediction, accuracy is calculated by dividing the number of correctly predicted Mfold base pairs by the number of canoncial, comparative base pairs within the RNA Contact Distance category.
  2. NPA, Not Publically Available - The sequence used for analysis has not been deposited in Genbank.