Archaea   2-10 11-20 21-30 31-40 41-50 51-60 61-70 71-80 81-90 91-100
C1 P A C P A C P A C P A C P A C P A C P A C P A C P A C P A
Archaeoglobus fulgidus M64487 154 92 60% 176 132 75% 82 52 63% 45 39 87% 36 29 81% 29 23 79% 24 21 88% 31 29 94% 29 25 86% 22 22 100%
Desulfurococcus mobilis X05480 160 100 63% 186 122 66% 101 42 42% 48 26 54% 35 26 74% 33 23 70% 24 18 75% 29 25 86% 26 26 100% 13 13 100%
Haloarcula marismortui X13738 143 83 58% 167 109 65% 89 55 62% 42 30 71% 33 19 58% 34 16 47% 22 12 55% 31 23 74% 26 22 85% 23 10 43%
Haloarcula marismortui rrnA AF034619 144 82 57% 166 100 60% 88 52 59% 42 29 69% 33 20 61% 34 17 50% 22 12 55% 31 23 74% 25 15 60% 22 8 36%
Haloarcula marismortui rrnB AF034620 144 80 56% 168 105 63% 89 56 63% 42 28 67% 33 23 70% 34 21 62% 22 12 55% 29 23 79% 25 21 84% 22 10 45%
Halobacterium salinarum X03407 146 79 54% 169 116 69% 81 53 65% 45 30 67% 31 25 81% 33 19 58% 21 13 62% 29 23 79% 27 25 93% 22 14 64%
Halococcus morrhuae X05481 146 88 60% 171 112 65% 84 61 73% 44 24 55% 34 21 62% 33 15 45% 21 12 57% 28 21 75% 24 17 71% 21 18 86%
Haloferax volcanii Thesis, Achenbach-Richter L. 147 87 59% 165 107 65% 78 54 69% 43 30 70% 31 21 68% 33 19 58% 23 16 70% 28 26 93% 29 23 79% 18 11 61%
Methanococcus jannaschii U67517 L77117 156 100 64% 183 134 73% 93 60 65% 47 35 74% 35 25 71% 36 16 44% 27 13 48% 31 24 77% 26 23 88% 22 19 86%
Methanococcus vannielii X02729 158 96 61% 173 126 73% 85 52 61% 44 29 66% 35 19 54% 30 9 30% 23 11 48% 27 20 74% 27 17 63% 21 12 57%
Methanospirillum hungatei M81323 150 80 53% 169 89 53% 77 40 52% 42 22 52% 33 15 45% 30 4 13% 23 3 13% 30 10 33% 26 16 62% 21 7 33%
Methanothermobacter thermautotrophicus X05482 156 81 52% 184 81 44% 88 39 44% 41 22 54% 37 19 51% 36 9 25% 21 11 52% 30 15 50% 27 12 44% 16 6 38%
Sulfolobus acidocaldarius M67495 165 103 62% 183 117 64% 94 50 53% 44 26 59% 33 24 73% 34 20 59% 23 11 48% 30 23 77% 24 20 83% 19 15 79%
Thermococcus celer M67497 157 90 57% 183 133 73% 92 65 71% 49 41 84% 37 27 73% 28 10 36% 21 18 86% 33 30 91% 26 26 100% 23 23 100%
Thermofilum pendens X14835 158 96 61% 193 133 69% 97 63 65% 52 34 65% 37 25 68% 31 15 48% 22 10 45% 33 21 64% 22 20 91% 18 11 61%
Thermoplasma acidophilum M32298 150 93 62% 173 113 65% 80 48 60% 42 31 74% 37 30 81% 31 14 45% 18 11 61% 22 15 68% 28 25 89% 23 17 74%
Thermoproteus tenax PUBMED 161 100 62% 188 129 69% 96 57 59% 47 25 53% 37 27 73% 31 13 42% 25 20 80% 32 27 84% 23 17 74% 21 11 52%
Bacteria   2-10 11-20 21-30 31-40 41-50 51-60 61-70 71-80 81-90 91-100
C1 P A C P A C P A C P A C P A C P A C P A C P A C P A C P A
Acinetobacter calcoaceticus X87280 140 94 67% 182 132 73% 87 40 46% 40 14 35% 35 8 23% 36 8 22% 30 14 47% 32 23 72% 18 9 50% 14 6 43%
Aeromonas hydrophila X87281 144 97 67% 181 140 77% 86 54 63% 39 20 51% 35 19 54% 35 10 29% 28 17 61% 31 25 81% 17 12 71% 14 4 29%
Aquifex aeolicus AE000709 AE000751 147 87 59% 180 130 72% 95 46 48% 47 39 83% 34 22 65% 40 17 43% 27 15 56% 30 24 80% 19 17 89% 18 15 83%
Bacillus anthracis X64645 134 86 64% 185 112 61% 81 38 47% 35 15 43% 34 11 32% 38 10 26% 28 10 36% 32 19 59% 22 11 50% 17 5 29%
Bacillus sp. X60981 144 80 56% 180 103 57% 83 38 46% 32 18 56% 33 16 48% 33 11 33% 29 19 66% 30 19 63% 21 15 71% 17 11 65%
Bacillus subtilis K00637 AF008220 Z99119 142 96 68% 183 120 66% 86 46 53% 36 25 69% 34 22 65% 38 13 34% 29 17 59% 32 24 75% 22 17 77% 15 11 73%
Bartonella bacilliformis L39095 133 85 64% 174 130 75% 93 51 55% 42 24 57% 38 22 58% 38 17 45% 30 12 40% 39 23 59% 23 13 57% 15 12 80%
Bordetella bronchiseptica X70371 136 72 53% 174 94 54% 81 45 56% 40 25 63% 36 18 50% 41 14 34% 24 14 58% 32 18 56% 18 3 17% 18 4 22%
Bordetella pertussis X68323 132 64 48% 170 73 43% 82 35 43% 40 28 70% 36 16 44% 39 7 18% 27 9 33% 32 8 25% 17 4 24% 17 3 18%
Borrelia burgdorferi M88330 146 76 52% 186 109 59% 89 33 37% 37 13 35% 33 12 36% 36 14 39% 30 23 77% 34 26 76% 20 18 90% 14 10 71%
Bradyrhizobium japonicum Z35330 135 98 73% 167 134 80% 86 54 63% 37 22 59% 37 22 59% 34 12 35% 27 19 70% 42 25 60% 26 18 69% 19 14 74%
Bradyrhizobium japonicum X71840 133 91 68% 166 124 75% 89 60 67% 37 26 70% 37 28 76% 37 17 46% 29 14 48% 42 25 60% 26 20 77% 19 16 84%
Burkholderia cepacia X16368 140 100 71% 177 109 62% 84 57 68% 39 23 59% 35 22 63% 41 12 29% 27 14 52% 31 23 74% 17 9 53% 18 12 67%
Burkholderia mallei Y17183 141 99 70% 178 109 61% 84 52 62% 39 24 62% 35 20 57% 40 12 30% 27 15 56% 32 24 75% 19 11 58% 17 8 47%
Burkholderia pseudomallei Y17184 141 96 68% 178 107 60% 84 52 62% 39 24 62% 35 20 57% 40 12 30% 27 15 56% 32 24 75% 19 11 58% 17 8 47%
Campylobacter coli U09611 139 85 61% 172 114 66% 89 51 57% 41 28 68% 37 22 59% 38 18 47% 26 17 65% 32 18 56% 21 12 57% 20 11 55%
Campylobacter jejuni Z29326 141 84 60% 173 115 66% 89 51 57% 39 31 79% 34 20 59% 40 11 28% 29 15 52% 31 17 55% 18 9 50% 18 9 50%
Chlamydia suis U68420 139 65 47% 177 108 61% 84 31 37% 41 15 37% 33 8 24% 33 3 9% 24 8 33% 31 10 32% 18 7 39% 19 10 53%
Chlamydia trachomatis U68443 136 66 49% 180 112 62% 88 37 42% 42 17 40% 34 13 38% 34 11 32% 29 12 41% 32 17 53% 20 10 50% 19 5 26%
Chlamydophila pneumoniae U76711 AE001668 141 70 50% 176 83 47% 84 27 32% 41 19 46% 33 14 42% 30 7 23% 25 14 56% 31 22 71% 18 13 72% 19 14 74%
Chlamydophila psittaci U68447 140 73 52% 181 90 50% 90 20 22% 44 7 16% 34 10 29% 33 5 15% 30 12 40% 32 21 66% 21 12 57% 18 4 22%
Chlorobium limicola M62805 139 97 70% 160 114 71% 74 46 62% 31 16 52% 26 14 54% 35 17 49% 24 16 67% 30 20 67% 17 13 76% 17 9 53%
Citrobacter freundii U77928 142 83 58% 178 102 57% 85 41 48% 38 18 47% 36 11 31% 39 7 18% 31 14 45% 30 13 43% 17 6 35% 17 3 18%
Clostridium botulinum A X65602 139 87 63% 176 123 70% 86 55 64% 34 18 53% 32 14 44% 35 5 14% 26 14 54% 32 24 75% 19 10 53% 19 10 53%
Clostridium botulinum B M94178 143 94 66% 180 127 71% 87 54 62% 36 24 67% 33 21 64% 36 13 36% 30 18 60% 31 17 55% 19 12 63% 19 10 53%
Clostridium botulinum B M94259 142 103 73% 179 122 68% 86 41 48% 36 22 61% 33 22 67% 36 10 28% 30 17 57% 31 21 68% 19 11 58% 19 5 26%
Clostridium botulinum E M94261 139 98 71% 181 130 72% 87 51 59% 36 23 64% 33 20 61% 36 13 36% 30 14 47% 30 19 63% 19 12 63% 18 9 50%
Coxiella burnetii X79704 135 72 53% 154 89 58% 74 23 31% 31 8 26% 27 5 19% 39 8 21% 29 13 45% 35 17 49% 17 7 41% 14 9 64%
Deinococcus radiodurans AE002087 145 84 58% 172 112 65% 80 34 43% 37 11 30% 33 10 30% 38 9 24% 28 9 32% 29 6 21% 21 3 14% 18 4 22%
Deinococcus radiodurans AE001886 145 82 57% 172 119 69% 80 34 43% 37 16 43% 33 11 33% 38 8 21% 28 15 54% 30 19 63% 21 15 71% 18 13 72%
Enterococcus faecalis X79341 143 94 66% 184 128 70% 82 46 56% 35 26 74% 34 25 74% 38 13 34% 29 20 69% 33 20 61% 18 9 50% 17 6 35%
Erysipelothrix rhusiopathiae AB019250 145 93 64% 175 124 71% 84 49 58% 33 21 64% 34 21 62% 37 10 27% 27 15 56% 33 14 42% 17 9 53% 17 11 65%
Escherichia coli J01695 144 100 69% 181 129 71% 88 58 66% 37 26 70% 37 22 59% 39 15 38% 30 19 63% 30 21 70% 17 10 59% 17 10 59%
Flexibacter flexilis M62806 143 71 50% 164 97 59% 79 37 47% 28 10 36% 26 5 19% 31 7 23% 28 11 39% 27 5 19% 19 0 0% 18 0 0%
Frankia sp. M55343 150 91 61% 193 108 56% 96 57 59% 53 30 57% 39 29 74% 37 13 35% 33 14 42% 33 18 55% 27 15 56% 13 6 46%
Geobacillus stearothermophilus K02663 148 101 68% 183 131 72% 84 63 75% 36 33 92% 33 28 85% 35 19 54% 28 18 64% 32 22 69% 20 15 75% 16 13 81%
Haemophilus influenzae (operons A-F) U32742 U32745 U32755 U32847 U32697 U32707 143 88 62% 178 124 70% 86 46 53% 36 18 50% 35 11 31% 38 7 18% 30 9 30% 32 19 59% 17 9 53% 17 6 35%
Helicobacter pylori U27270 146 77 53% 175 98 56% 76 31 41% 35 16 46% 33 17 52% 32 18 56% 27 14 52% 33 18 55% 16 13 81% 18 7 39%
Heliobacterium chlorum NPA2 142 92 65% 176 127 72% 84 50 60% 41 30 73% 34 19 56% 37 7 19% 27 15 56% 38 30 79% 23 16 70% 22 16 73%
Klebsiella pneumoniae X87284 145 93 64% 180 120 67% 87 49 56% 36 20 56% 37 22 59% 39 20 51% 30 18 60% 31 18 58% 17 8 47% 17 7 41%
Lactobacillus delbrueckii X68426 143 90 63% 184 126 68% 83 50 60% 36 28 78% 33 13 39% 39 11 28% 26 13 50% 31 25 81% 19 17 89% 18 15 83%
Lactococcus lactis X68434 145 93 64% 180 99 55% 81 28 35% 37 18 49% 35 18 51% 39 8 21% 29 17 59% 33 25 76% 20 13 65% 17 11 65%
Leptospira interrogans X14249 146 85 58% 175 101 58% 90 49 54% 42 22 52% 31 12 39% 36 17 47% 30 11 37% 34 17 50% 19 15 79% 13 6 46%
Listeria monocytogenes X64533 139 88 63% 183 129 70% 85 41 48% 35 17 49% 34 17 50% 38 8 21% 29 9 31% 30 14 47% 22 12 55% 16 6 38%
Listeria monocytogenes X68420 144 98 68% 185 137 74% 87 54 62% 36 22 61% 34 23 68% 37 20 54% 30 21 70% 32 25 78% 22 18 82% 16 13 81%
Micrococcus luteus X06484 148 82 55% 193 143 74% 90 51 57% 45 21 47% 37 17 46% 36 7 19% 26 11 42% 35 15 43% 23 14 61% 16 7 44%
Mycobacterium leprae X56657 150 98 65% 189 126 67% 96 52 54% 48 33 69% 34 22 65% 35 16 46% 21 4 19% 34 20 59% 27 18 67% 22 11 50%
Mycobacterium tuberculosis Z73902 148 82 55% 195 108 55% 97 50 52% 51 22 43% 35 7 20% 35 7 20% 21 10 48% 32 15 47% 26 15 58% 24 13 54%
Mycoplasma genitalium U39694 144 70 49% 184 105 57% 86 33 38% 37 18 49% 31 17 55% 41 16 39% 29 15 52% 35 19 54% 18 7 39% 16 0 0%
Mycoplasma pneumoniae X68422 U00089 144 89 62% 182 132 73% 85 51 60% 37 15 41% 32 11 34% 40 12 30% 30 23 77% 32 19 59% 19 10 53% 15 7 47%
Myroides odoratus M62807 133 51 38% 153 62 41% 72 32 44% 26 10 38% 28 13 46% 32 6 19% 24 4 17% 28 5 18% 21 4 19% 17 0 0%
Neisseria gonorrhoeae X67293 143 84 59% 178 112 63% 84 39 46% 43 21 49% 33 13 39% 39 8 21% 26 9 35% 30 10 33% 17 4 24% 17 0 0%
Neisseria meningitidis X67300 143 88 62% 178 121 68% 85 40 47% 43 27 63% 33 18 55% 39 9 23% 26 9 35% 30 10 33% 17 4 24% 17 0 0%
Parachlamydia acanthamoebae Y07555 143 76 53% 180 104 58% 85 40 47% 43 21 49% 32 14 44% 34 13 38% 25 13 52% 34 22 65% 18 10 56% 16 5 31%
Pirellula marina X07408 138 87 63% 173 122 71% 84 57 68% 35 27 77% 32 17 53% 36 13 36% 23 16 70% 31 24 77% 19 13 68% 16 9 56%
Plesiomonas shigelloides X65487 135 72 53% 171 97 57% 81 35 43% 32 7 22% 33 14 42% 39 10 26% 27 5 19% 23 9 39% 18 8 44% 16 4 25%
Pseudomonas aeruginosa Y00432 142 90 63% 181 119 66% 88 41 47% 39 20 51% 33 20 61% 40 8 20% 28 3 11% 32 8 25% 17 3 18% 14 4 29%
Rhodobacter capsulatus X06485 141 82 58% 170 104 61% 88 45 51% 39 26 67% 38 20 53% 35 15 43% 26 14 54% 38 20 53% 22 11 50% 20 3 15%
Rhodobacter sphaeroides X53853 143 87 61% 169 109 64% 90 51 57% 42 29 69% 35 27 77% 37 23 62% 27 17 63% 38 26 68% 21 14 67% 18 11 61%
Rhodococcus erythropolis AF001265 148 92 62% 189 131 69% 94 45 48% 56 22 39% 41 17 41% 36 13 36% 27 9 33% 38 17 45% 25 16 64% 14 4 29%
Rhodopseudomonas palustris X71839 137 86 63% 168 105 63% 87 54 62% 40 21 53% 38 20 53% 37 21 57% 28 15 54% 42 24 57% 20 13 65% 15 8 53%
Rickettsia prowazekii AJ235270 135 79 59% 175 116 66% 88 50 57% 37 23 62% 35 23 66% 35 15 43% 27 11 41% 38 23 61% 22 14 64% 14 9 64%
Rickettsia rickettsii U11022 133 92 69% 173 141 82% 87 60 69% 37 31 84% 35 24 69% 32 14 44% 26 16 62% 38 32 84% 21 16 76% 14 13 93%
Ruminobacter amylophilus X06765 143 83 58% 173 103 60% 79 35 44% 38 18 47% 34 9 26% 38 10 26% 30 12 40% 30 15 50% 17 4 24% 14 0 0%
Simkania negevensis U68460 141 85 60% 178 121 68% 87 42 48% 43 17 40% 31 9 29% 31 6 19% 24 14 58% 34 16 47% 17 9 53% 18 7 39%
Staphylococcus aureus X68425 147 92 63% 184 120 65% 86 47 55% 36 20 56% 34 25 74% 38 16 42% 29 17 59% 30 18 60% 22 16 73% 16 10 63%
Staphylococcus carnosus X68419 146 96 66% 186 129 69% 86 45 52% 36 29 81% 34 29 85% 37 16 43% 29 19 66% 31 18 58% 22 16 73% 17 13 76%
Streptomyces ambofaciens M27245 150 102 68% 187 135 72% 100 63 63% 49 29 59% 38 19 50% 32 10 31% 29 21 72% 38 20 53% 23 14 61% 18 8 44%
Streptomyces griseus X61478 151 84 56% 187 105 56% 98 39 40% 49 21 43% 37 19 51% 38 15 39% 28 15 54% 37 17 46% 24 13 54% 16 2 13%
Synechococcus sp. PCC 6301 X00512 143 97 68% 177 120 68% 82 50 61% 32 20 63% 32 13 41% 36 14 39% 25 16 64% 33 28 85% 18 13 72% 19 8 42%
Thermotoga maritima M67498 152 99 65% 180 132 73% 97 64 66% 42 29 69% 34 22 65% 45 27 60% 33 23 70% 33 27 82% 19 15 79% 13 10 77%
Thermus aquaticus NPA 154 104 68% 185 134 72% 83 47 57% 40 23 58% 32 20 63% 34 7 21% 20 11 55% 28 21 75% 25 18 72% 24 14 58%
Thermus thermophilus X12612 150 100 67% 181 130 72% 81 45 56% 39 26 67% 32 24 75% 29 9 31% 20 8 40% 27 12 44% 24 18 75% 24 17 71%
Treponema pallidum (rRNA A) AE001204 147 78 53% 186 105 56% 89 39 44% 34 11 32% 32 3 9% 36 0 0% 31 8 26% 31 10 32% 22 7 32% 15 0 0%
Tropheryma whipplei AF190687 144 96 67% 182 127 70% 90 47 52% 50 28 56% 36 16 44% 35 10 29% 27 10 37% 32 6 19% 19 1 5% 14 5 36%
Eukaryotic Chloroplast   2-10 11-20 21-30 31-40 41-50 51-60 61-70 71-80 81-90 91-100
C1 P A C P A C P A C P A C P A C P A C P A C P A C P A C P A
Alnus incana M75719 M75722 141 85 60% 171 101 59% 79 44 56% 31 22 71% 31 11 35% 35 9 26% 28 8 29% 31 18 58% 15 11 73% 14 4 29%
Astasia longa X14386 142 46 32% 171 63 37% 93 31 33% 39 7 18% 31 3 10% 34 0 0% 24 4 17% 24 2 8% 19 0 0% 19 0 0%
Chlamydomonas eugametos Z17234 140 75 54% 174 85 49% 95 38 40% 39 15 38% 40 13 33% 34 10 29% 22 8 36% 31 16 52% 17 6 35% 16 0 0%
Chlamydomonas frankii L43352 X68905 X68906 X68907 X68908 X68909 Z17230 139 64 46% 173 84 49% 88 33 38% 34 12 35% 31 14 45% 30 16 53% 21 6 29% 30 11 37% 18 6 33% 13 3 23%
Chlamydomonas geitleri L43353 X68891 X68892 Z15153 136 69 51% 175 106 61% 96 47 49% 38 9 24% 31 7 23% 32 14 44% 22 8 36% 31 15 48% 17 8 47% 12 2 17%
Chlamydomonas gelatinosa Z15151 139 67 48% 176 95 54% 89 45 51% 32 13 41% 32 11 34% 31 16 52% 22 8 36% 32 13 41% 16 8 50% 11 2 18%
Chlamydomonas humicola L42989 X68921 X68922 Z17235 139 77 55% 174 104 60% 87 36 41% 35 7 20% 32 6 19% 30 9 30% 22 8 36% 31 17 55% 18 9 50% 10 2 20%
Chlamydomonas indica X68893 X68894 X68895 X68896 X68897 X68898 Z17228 139 74 53% 174 85 49% 95 38 40% 39 15 38% 40 13 33% 34 10 29% 22 8 36% 31 16 52% 17 6 35% 15 0 0%
Chlamydomonas iyengarii L43354 X68885 X68886 Z15148 137 70 51% 178 105 59% 88 47 53% 32 16 50% 33 8 24% 32 11 34% 23 14 61% 31 23 74% 13 9 69% 11 9 82%
Chlamydomonas komma L43502 X68927 X68928 X68929 Z17237 140 78 56% 176 103 59% 91 41 45% 32 15 47% 30 18 60% 32 16 50% 21 9 43% 33 25 76% 16 12 75% 11 6 55%
Chlamydomonas mexicana L49148 X68910 X68911 X68912 Z17231 140 76 54% 171 98 57% 91 51 56% 39 22 56% 34 17 50% 30 12 40% 23 10 43% 31 14 45% 16 8 50% 11 0 0%
Chlamydomonas pallidostigmatica L43503 X68899 X68900 X68901 X68902 X68903 X68904 Z17229 140 77 55% 173 105 61% 94 29 31% 42 15 36% 34 18 53% 31 17 55% 22 9 41% 33 15 45% 18 9 50% 14 6 43%
Chlamydomonas peterfii L43538 X68887 X68888 Z15149 141 75 53% 177 110 62% 83 48 58% 32 11 34% 30 12 40% 31 15 48% 25 13 52% 34 16 47% 16 8 50% 12 2 17%
Chlamydomonas pitschmannii Z15152 137 82 60% 166 95 57% 96 44 46% 39 21 54% 36 17 47% 32 14 44% 22 7 32% 31 16 52% 17 4 24% 12 2 17%
Chlamydomonas reinhardtii X15727 X16686 X16687 138 84 61% 179 114 64% 92 56 61% 33 15 45% 32 10 31% 33 16 48% 24 9 38% 32 17 53% 20 10 50% 13 4 31%
Chlamydomonas sp. SAG 66.72 L43539 X68923 X68924 X68925 X68926 Z17236 132 71 54% 175 105 60% 97 45 46% 39 18 46% 34 12 35% 33 12 36% 27 12 44% 33 22 67% 23 15 65% 15 9 60%
Chlamydomonas starrii L43504 X68889 X68890 Z15150 137 65 47% 179 106 59% 88 39 44% 32 13 41% 33 4 12% 32 7 22% 23 12 52% 31 20 65% 14 10 71% 11 9 82%
Chlamydomonas zebra L43356 Z17233 138 80 58% 175 97 55% 90 50 56% 32 19 59% 31 18 58% 31 16 52% 22 8 36% 31 19 61% 17 8 47% 11 2 18%
Chlorella ellipsoidea M36158 140 72 51% 170 92 54% 79 33 42% 32 13 41% 26 12 46% 33 20 61% 26 16 62% 38 19 50% 16 9 56% 18 5 28%
Conopholis americana X59768 X58863 132 61 46% 165 78 47% 80 31 39% 26 2 8% 34 3 9% 33 2 6% 29 2 7% 29 0 0% 15 0 0% 12 0 0%
Epifagus virginiana X62099 138 68 49% 164 76 46% 82 39 48% 29 14 48% 34 6 18% 30 3 10% 31 2 6% 29 4 14% 17 6 35% 12 0 0%
Euglena gracilis X12890 X13310 140 73 52% 171 94 55% 84 37 44% 36 10 28% 34 5 15% 36 7 19% 21 5 24% 30 17 57% 25 10 40% 18 5 28%
Marchantia polymorpha X04465 136 68 50% 171 77 45% 82 35 43% 30 11 37% 27 8 30% 36 12 33% 30 10 33% 33 15 45% 17 10 59% 14 4 29%
Nicotiana tabacum Z00044 141 83 59% 174 111 64% 81 42 52% 31 19 61% 31 12 39% 35 11 31% 28 13 46% 30 12 40% 18 9 50% 14 4 29%
Odontella sinensis Z67753 141 78 55% 171 97 57% 84 45 54% 31 12 39% 34 8 24% 31 5 16% 25 10 40% 29 14 48% 18 5 28% 19 0 0%
Oryza sativa X15901 139 71 51% 168 77 46% 90 43 48% 35 22 63% 34 16 47% 35 15 43% 32 10 31% 36 14 39% 15 4 27% 15 4 27%
Palmaria palmata Z18289 139 79 57% 171 108 63% 83 44 53% 33 12 36% 31 13 42% 33 11 33% 25 7 28% 32 11 34% 20 11 55% 20 4 20%
Pisum sativum X55033 M37430 140 65 46% 173 84 49% 79 38 48% 31 4 13% 28 9 32% 37 9 24% 28 6 21% 30 8 27% 19 4 21% 14 2 14%
Plasmodium falciparum (plastid-like) X61660 X95275 130 33 25% 156 46 29% 88 13 15% 31 10 32% 27 11 41% 36 6 17% 21 3 14% 31 1 3% 29 5 17% 17 5 29%
Toxoplasma gondii (plastid-like) U18086 122 53 43% 158 76 48% 84 34 40% 28 18 64% 27 17 63% 33 13 39% 28 10 36% 30 12 40% 16 6 38% 7 3 43%
Zea mays Z00028 138 73 53% 166 80 48% 90 43 48% 36 18 50% 34 11 32% 38 18 47% 36 15 42% 36 15 42% 17 8 47% 14 0 0%
Eukaryotic Mitochondrion   2-10 11-20 21-30 31-40 41-50 51-60 61-70 71-80 81-90 91-100
C1 P A C P A C P A C P A C P A C P A C P A C P A C P A C P A
Acanthamoeba castellanii U03732 130 45 35% 151 71 47% 77 34 44% 34 14 41% 28 10 36% 38 14 37% 25 9 36% 30 10 33% 15 8 53% 16 7 44%
Aedes albopictus X01078 64 15 23% 84 19 23% 36 8 22% 15 7 47% 14 4 29% 8 0 0% 4 0 0% 6 0 0% 6 0 0% 11 0 0%
Albinaria caerulea X83390 56 7 13% 71 21 30% 24 9 38% 1 0 0% 5 1 20% 10 5 50% 8 5 63% 2 0 0% 1 0 0% 7 0 0%
Albinaria turrita X71393 X71394 57 8 14% 69 13 19% 22 10 45% 0 0 0% 4 1 25% 11 4 36% 9 0 0% 5 0 0% 0 0 0% 8 0 0%
Allomyces macrogynus U41288 150 81 54% 162 92 57% 79 36 46% 38 17 45% 27 9 33% 19 6 32% 19 12 63% 21 8 38% 13 7 54% 15 6 40%
Antilocapra americana M55540 73 31 42% 82 45 55% 39 17 44% 14 7 50% 14 6 43% 13 4 31% 12 0 0% 2 0 0% 1 1 100% 11 3 27%
Apis mellifera L06178 69 9 13% 77 13 17% 32 8 25% 13 1 8% 17 0 0% 6 0 0% 4 0 0% 5 0 0% 6 0 0% 7 0 0%
Artemia salina X12965 49 13 27% 74 24 32% 31 12 39% 9 0 0% 9 0 0% 7 0 0% 8 0 0% 10 0 0% 5 0 0% 5 0 0%
Ascaris suum X54253 43 5 12% 58 11 19% 16 5 31% 9 4 44% 7 2 29% 6 5 83% 6 0 0% 6 0 0% 6 0 0% 9 0 0%
Aspergillus nidulans J01390 X06961 112 45 40% 125 51 41% 64 25 39% 25 12 48% 22 17 77% 33 23 70% 32 15 47% 25 16 64% 18 15 83% 22 17 77%
Balaenoptera musculus X72204 70 30 43% 82 29 35% 38 22 58% 12 10 83% 15 8 53% 12 9 75% 11 3 27% 2 0 0% 2 0 0% 12 4 33%
Bos taurus J01394 70 19 27% 81 32 40% 40 13 33% 15 1 7% 13 8 62% 13 9 69% 12 8 67% 2 0 0% 1 0 0% 11 0 0%
Cacozeliana lacertina AF101007 69 25 36% 78 33 42% 36 6 17% 15 4 27% 13 6 46% 10 4 40% 8 0 0% 4 0 0% 2 2 100% 6 2 33%
Caenorhabditis elegans X54252 49 11 22% 58 13 22% 17 11 65% 10 5 50% 6 6 100% 6 6 100% 6 0 0% 6 0 0% 6 3 50% 8 4 50%
Cafeteria roenbergensis UNP00173 134 71 53% 137 90 66% 77 36 47% 31 17 55% 35 24 69% 37 20 54% 20 13 65% 33 8 24% 11 4 36% 10 1 10%
Capra hircus M55541 65 30 46% 79 39 49% 34 23 68% 9 6 67% 14 9 64% 12 8 67% 12 8 67% 2 0 0% 1 0 0% 7 0 0%
Cepaea nemoralis U23045 50 18 36% 68 23 34% 15 1 7% 0 0 0% 6 2 33% 10 2 20% 4 0 0% 6 5 83% 8 4 50% 7 3 43%
Cervus unicolor M35875 66 24 36% 75 40 53% 36 21 58% 8 6 75% 14 7 50% 13 7 54% 11 4 36% 2 0 0% 0 0 0% 7 0 0%
Chlamydomonas eugametos AF008237 88 23 26% 105 46 44% 56 30 54% 15 6 40% 12 0 0% 22 6 27% 16 8 50% 13 11 85% 8 6 75% 14 1 7%
Chlamydomonas reinhardtii X54860 U03843 84 34 40% 84 36 43% 49 27 55% 20 11 55% 13 5 38% 26 9 35% 18 9 50% 21 9 43% 11 4 36% 10 0 0%
Chondrus crispus Z46224 Z47547 126 49 39% 131 71 54% 67 23 34% 36 17 47% 31 16 52% 40 12 30% 22 8 36% 28 13 46% 10 8 80% 7 7 100%
Crithidia fasciculata X02548 31 0 0% 34 1 3% 16 1 6% 6 0 0% 6 0 0% 5 0 0% 3 0 0% 0 0 0% 1 0 0% 6 0 0%
Crithidia oncopelti X51736 27 0 0% 38 0 0% 13 0 0% 3 0 0% 6 0 0% 5 0 0% 3 0 0% 0 0 0% 3 0 0% 5 0 0%
Crossostoma lacustre M91245 72 34 47% 84 49 58% 37 16 43% 7 1 14% 8 2 25% 21 11 52% 13 6 46% 2 0 0% 1 0 0% 8 0 0%
Damaliscus pygargus M86499 72 29 40% 82 42 51% 39 21 54% 13 11 85% 14 9 64% 13 9 69% 12 4 33% 2 0 0% 3 0 0% 11 0 0%
Dictyostelium discoideum D16466 117 41 35% 146 49 34% 66 25 38% 27 8 30% 26 6 23% 30 9 30% 21 5 24% 29 8 28% 20 8 40% 12 3 25%
Didelphis virginiana Z29573 69 26 38% 82 44 54% 39 18 46% 15 4 27% 16 3 19% 14 8 57% 11 7 64% 2 0 0% 4 0 0% 11 0 0%
Drosophila melanogaster X53506 64 17 27% 77 25 32% 34 6 18% 18 7 39% 16 5 31% 7 0 0% 4 0 0% 7 0 0% 7 0 0% 10 4 40%
Drosophila yakuba X03240 63 16 25% 76 25 33% 31 3 10% 17 7 41% 14 4 29% 7 0 0% 4 0 0% 6 0 0% 3 1 33% 6 4 67%
Equus caballus X79547 69 26 38% 85 47 55% 39 17 44% 15 7 47% 14 9 64% 14 10 71% 12 7 58% 5 0 0% 3 0 0% 10 0 0%
Euhadra herklotsi Z71693 60 19 32% 66 24 36% 15 4 27% 2 0 0% 6 1 17% 8 3 38% 6 0 0% 1 0 0% 2 0 0% 11 3 27%
Gallus gallus X52392 69 15 22% 76 26 34% 34 9 26% 7 2 29% 12 4 33% 19 6 32% 11 0 0% 5 0 0% 2 0 0% 15 0 0%
Homo sapiens D38112 70 19 27% 80 31 39% 38 20 53% 8 6 75% 17 8 47% 12 4 33% 11 1 9% 2 0 0% 5 0 0% 8 0 0%
Hydropotes inermis M35876 65 23 35% 79 40 51% 34 18 53% 8 6 75% 14 10 71% 13 9 69% 11 4 36% 2 0 0% 0 0 0% 7 0 0%
Katharina tunicata U09810 55 12 22% 74 19 26% 36 9 25% 17 5 29% 13 1 8% 8 0 0% 3 2 67% 6 1 17% 4 0 0% 4 0 0%
Leishmania tarentolae X02354 31 3 10% 36 3 8% 16 0 0% 4 0 0% 7 1 14% 4 3 75% 3 3 100% 0 0 0% 3 0 0% 6 0 0%
Leptomonas sp. J03814 30 0 0% 35 0 0% 11 0 0% 5 0 0% 7 0 0% 4 0 0% 3 0 0% 0 0 0% 2 0 0% 6 0 0%
Locusta migratoria X80245 64 16 25% 75 30 40% 31 9 29% 16 11 69% 10 7 70% 8 1 13% 4 0 0% 4 0 0% 4 0 0% 10 4 40%
Loligo bleekeri AB009838 61 14 23% 90 24 27% 39 9 23% 13 2 15% 7 0 0% 5 0 0% 4 0 0% 7 0 0% 4 0 0% 6 0 0%
Lumbricus terrestris U24570 58 13 22% 76 32 42% 26 7 27% 4 2 50% 6 5 83% 9 5 56% 6 2 33% 3 0 0% 8 0 0% 8 4 50%
Marchantia polymorpha M68929 123 61 50% 147 82 56% 78 31 40% 44 19 43% 40 17 43% 34 16 47% 23 14 61% 26 22 85% 19 11 58% 13 0 0%
Meloidogyne javanica L76261 29 0 0% 44 5 11% 11 1 9% 4 0 0% 3 0 0% 5 0 0% 10 0 0% 8 0 0% 4 0 0% 2 0 0%
Muntiacus reevesi M35877 73 26 36% 90 34 38% 45 15 33% 13 0 0% 15 6 40% 18 7 39% 14 4 29% 3 0 0% 3 0 0% 8 3 38%
Mus musculus J01420 72 22 31% 83 44 53% 40 14 35% 16 5 31% 16 0 0% 11 5 45% 11 3 27% 2 0 0% 4 0 0% 9 0 0%
Mytilus edulis M83756 71 16 23% 82 25 30% 26 5 19% 12 6 50% 9 1 11% 12 0 0% 4 0 0% 4 0 0% 3 0 0% 4 0 0%
Neurospora crassa X55443 115 64 56% 129 68 53% 67 40 60% 32 23 72% 21 10 48% 26 9 35% 19 9 47% 17 4 24% 11 0 0% 13 4 31%
Ochromonas danica AF287134 135 58 43% 139 74 53% 74 42 57% 36 12 33% 36 9 25% 30 10 33% 27 10 37% 32 14 44% 12 11 92% 10 3 30%
Odocoileus virginianus M35874 69 24 35% 83 38 46% 31 17 55% 8 1 13% 14 7 50% 13 4 31% 11 0 0% 2 0 0% 1 0 0% 7 0 0%
Oenothera berteriana X02559 126 57 45% 134 61 46% 83 32 39% 33 10 30% 33 11 33% 34 3 9% 22 6 27% 22 11 50% 14 8 57% 7 2 29%
Pan troglodytes D38113 69 23 33% 79 39 49% 38 16 42% 9 2 22% 16 6 38% 11 4 36% 11 3 27% 2 0 0% 5 0 0% 7 0 0%
Paracentrotus lividus J04815 66 24 36% 74 31 42% 29 9 31% 6 0 0% 12 2 17% 16 5 31% 19 6 32% 11 4 36% 9 0 0% 14 3 21%
Paracrostoma paludiformis AF101008 59 23 39% 79 32 41% 35 12 34% 19 4 21% 14 2 14% 14 0 0% 6 0 0% 2 0 0% 2 1 50% 9 5 56%
Paramecium primaurelia K00634 104 30 29% 125 45 36% 58 17 29% 24 3 13% 39 9 23% 40 10 25% 16 3 19% 7 0 0% 11 0 0% 11 0 0%
Paramecium tetraurelia K01749 125 45 36% 134 50 37% 63 16 25% 27 3 11% 48 13 27% 38 6 16% 18 7 39% 8 4 50% 6 2 33% 10 2 20%
Pecten maximus X92688 57 18 32% 76 36 47% 38 13 34% 8 0 0% 5 0 0% 18 0 0% 8 0 0% 10 0 0% 7 0 0% 10 0 0%
Penicillium chrysogenum D13859 S56867 101 49 49% 136 71 52% 61 22 36% 29 17 59% 24 6 25% 38 5 13% 23 3 13% 14 1 7% 16 5 31% 17 3 18%
Phoca vitulina X63726 69 32 46% 84 44 52% 37 14 38% 14 8 57% 13 2 15% 13 0 0% 11 0 0% 3 0 0% 4 0 0% 9 0 0%
Physarum polycephalum AF080601 120 26 22% 128 49 38% 70 30 43% 24 10 42% 26 12 46% 26 9 35% 34 12 35% 29 9 31% 18 3 17% 5 4 80%
Pichia canadensis D31785 102 51 50% 122 68 56% 72 25 35% 39 13 33% 16 10 63% 33 21 64% 27 18 67% 26 14 54% 18 7 39% 22 14 64%
Podospora anserina X14735 X55026 107 64 60% 129 74 57% 72 28 39% 35 19 54% 26 12 46% 33 15 45% 25 15 60% 25 14 56% 13 5 38% 13 4 31%
Porphyra purpurea AF114794 117 43 37% 132 56 42% 76 20 26% 35 11 31% 34 15 44% 38 12 32% 25 9 36% 21 9 43% 15 5 33% 7 0 0%
Prototheca wickerhamii X68722 126 77 61% 157 105 67% 77 50 65% 37 28 76% 39 34 87% 33 16 48% 28 11 39% 29 19 66% 15 12 80% 10 2 20%
Pylaiella littoralis Z48620 128 45 35% 139 53 38% 63 21 33% 35 13 37% 30 10 33% 25 1 4% 23 6 26% 30 8 27% 17 9 53% 19 6 32%
Pyura stolonifera X74513 46 12 26% 62 18 29% 15 5 33% 10 0 0% 5 0 0% 4 0 0% 4 0 0% 6 0 0% 5 0 0% 3 0 0%
Rana catesbeiana X12841 65 27 42% 80 45 56% 31 17 55% 10 5 50% 11 3 27% 16 5 31% 8 4 50% 2 0 0% 2 1 50% 7 5 71%
Rattus norvegicus JO1438 61 8 13% 70 22 31% 32 10 31% 6 0 0% 15 0 0% 12 5 42% 12 3 25% 2 0 0% 1 0 0% 8 0 0%
Reclinomonas americana AF007261 134 63 47% 168 84 50% 78 40 51% 40 28 70% 32 16 50% 32 8 25% 21 10 48% 37 13 35% 20 8 40% 16 0 0%
Rhizopus stolonifer NPA 128 69 54% 135 71 53% 70 26 37% 30 9 30% 32 18 56% 39 23 59% 29 21 72% 12 5 42% 4 0 0% 12 5 42%
Rhodomonas salina AF288090 126 49 39% 139 71 51% 73 36 49% 39 14 36% 29 16 55% 38 19 50% 25 11 44% 26 12 46% 24 4 17% 11 0 0%
Saccharomyces cerevisiae J01527 99 29 29% 107 28 26% 72 19 26% 32 5 16% 24 5 21% 28 3 11% 27 3 11% 24 5 21% 30 12 40% 18 4 22%
Sceloporus undulatus L28075 74 25 34% 80 43 54% 35 12 34% 16 5 31% 8 1 13% 7 0 0% 5 0 0% 3 0 0% 3 0 0% 15 4 27%
Schizosaccharomyces pombe X06597 127 58 46% 139 72 52% 66 24 36% 38 18 47% 34 18 53% 36 14 39% 18 10 56% 15 1 7% 15 0 0% 14 5 36%
Strongylocentrotus purpuratus X12631 57 20 35% 65 25 38% 21 6 29% 4 0 0% 6 3 50% 12 5 42% 13 3 23% 7 0 0% 5 2 40% 10 4 40%
Suillus sinuspaulianus L47585 105 40 38% 131 56 43% 80 25 31% 30 5 17% 27 4 15% 36 16 44% 31 16 52% 16 4 25% 12 0 0% 13 5 38%
Tetrahymena pyriformis M58010 118 51 43% 146 71 49% 76 42 55% 30 12 40% 31 16 52% 38 15 39% 24 8 33% 20 5 25% 5 0 0% 5 1 20%
Tetrahymena pyriformis M58011 118 49 42% 143 62 43% 71 34 48% 29 11 38% 32 20 63% 38 19 50% 25 8 32% 19 5 26% 5 0 0% 7 3 43%
Tragulus napu M55539 65 25 38% 86 43 50% 33 18 55% 7 7 100% 14 8 57% 12 9 75% 12 4 33% 2 0 0% 1 0 0% 8 4 50%
Triticum aestivum Z11889 Z14078 125 46 37% 139 53 38% 85 24 28% 38 19 50% 30 16 53% 30 7 23% 20 10 50% 22 8 36% 14 5 36% 6 0 0%
Trypanosoma brucei X02547 29 1 3% 36 4 11% 16 3 19% 3 0 0% 6 0 0% 5 0 0% 3 0 0% 0 0 0% 3 0 0% 5 0 0%
Xenopus laevis M10217 71 25 35% 90 48 53% 42 27 64% 10 5 50% 10 4 40% 18 6 33% 10 4 40% 6 0 0% 4 0 0% 9 0 0%
Zea mays K01868 122 40 33% 141 49 35% 85 34 40% 40 20 50% 28 8 29% 28 2 7% 21 5 24% 25 7 28% 14 5 36% 6 0 0%
Eukaryotic Nuclear   2-10 11-20 21-30 31-40 41-50 51-60 61-70 71-80 81-90 91-100
C1 P A C P A C P A C P A C P A C P A C P A C P A C P A C P A
Aedes albopictus L22060 146 68 47% 186 106 57% 98 62 63% 51 29 57% 50 23 46% 38 17 45% 25 9 36% 22 11 50% 21 15 71% 13 5 38%
Arabidopsis thaliana X52320 159 73 46% 181 101 56% 115 48 42% 47 22 47% 45 23 51% 51 24 47% 30 12 40% 26 11 42% 19 19 100% 13 8 62%
Babesia bigemina NPA 146 49 34% 162 74 46% 99 30 30% 33 12 36% 35 11 31% 40 11 28% 21 7 33% 24 7 29% 13 6 46% 14 1 7%
Brassica napus D10840 161 74 46% 185 93 50% 114 51 45% 46 25 54% 44 21 48% 53 20 38% 31 21 68% 26 12 46% 18 8 44% 11 3 27%
Caenorhabditis elegans X03680 169 95 56% 208 130 63% 115 68 59% 53 30 57% 37 21 57% 47 17 36% 34 19 56% 33 23 70% 18 18 100% 11 9 82%
Candida albicans L28817 167 74 44% 190 104 55% 105 31 30% 55 29 53% 56 27 48% 41 15 37% 33 12 36% 34 17 50% 19 11 58% 10 2 20%
Chlorella ellipsoidea D17810 D13340 169 78 46% 185 89 48% 107 46 43% 50 34 68% 47 24 51% 50 16 32% 28 8 29% 28 14 50% 19 15 79% 17 4 24%
Crithidia fasciculata Y00055 140 78 56% 188 115 61% 117 67 57% 54 27 50% 27 12 44% 29 4 14% 24 11 46% 22 13 59% 15 5 33% 7 2 29%
Dictyostelium discoideum X00601 V00189 127 62 49% 154 97 63% 95 55 58% 49 32 65% 43 26 60% 43 29 67% 20 11 55% 30 16 53% 17 15 88% 10 7 70%
Didymium iridis X60210 161 67 42% 192 96 50% 123 52 42% 48 17 35% 51 17 33% 40 21 53% 30 18 60% 30 16 53% 22 8 36% 12 7 58%
Drosophila melanogaster M21017 X15707 145 55 38% 189 93 49% 96 52 54% 57 32 56% 44 19 43% 45 22 49% 36 23 64% 29 22 76% 25 21 84% 16 10 63%
Encephalitozoon cuniculi AJ005581 117 40 34% 141 57 40% 63 27 43% 30 20 67% 32 12 38% 24 7 29% 21 10 48% 24 14 58% 19 9 47% 6 0 0%
Entamoeba histolytica X65163 159 81 51% 175 109 62% 104 55 53% 42 24 57% 34 21 62% 46 20 43% 28 10 36% 28 10 36% 19 10 53% 16 14 88%
Euglena gracilis X53361 173 55 32% 188 75 40% 107 29 27% 61 7 11% 36 0 0% 45 4 9% 23 3 13% 32 2 6% 22 0 0% 9 0 0%
Filobasidiella neoformans var. bacillispora L14067 171 105 61% 193 142 74% 113 49 43% 56 37 66% 49 32 65% 44 26 59% 31 19 61% 34 22 65% 21 19 90% 14 2 14%
Fragaria x ananassa X15589 X58118 160 68 43% 176 74 42% 108 39 36% 49 20 41% 42 20 48% 51 13 25% 29 7 24% 28 11 39% 18 10 56% 14 2 14%
Giardia ardeae X58290 143 48 34% 169 73 43% 87 39 45% 35 11 31% 39 10 26% 29 5 17% 22 14 64% 31 14 45% 20 13 65% 9 5 56%
Giardia intestinalis X52949 140 51 36% 167 63 38% 92 28 30% 35 11 31% 40 12 30% 34 4 12% 18 9 50% 26 6 23% 25 9 36% 13 10 77%
Giardia muris X65063 140 52 37% 170 71 42% 82 42 51% 31 10 32% 38 7 18% 34 8 24% 23 11 48% 28 15 54% 15 14 93% 10 6 60%
Herdmania momus X53538 158 45 28% 200 64 32% 97 27 28% 48 17 35% 36 11 31% 48 8 17% 34 6 18% 26 11 42% 18 14 78% 18 7 39%
Hexamita inflata NPA 133 75 56% 144 81 56% 89 43 48% 38 17 45% 31 13 42% 29 11 38% 23 7 30% 20 14 70% 10 9 90% 9 2 22%
Homo sapiens J01866 M11167 148 49 33% 197 88 45% 99 24 24% 43 12 28% 32 11 34% 40 9 23% 29 5 17% 29 13 45% 19 15 79% 12 2 17%
Lycopersicon esculentum X13557 X52265 165 79 48% 186 94 51% 115 56 49% 46 23 50% 43 13 30% 55 19 35% 36 15 42% 24 11 46% 18 14 78% 13 4 31%
Microsporidium 57864 U90885 116 46 40% 152 67 44% 59 19 32% 21 4 19% 30 10 33% 28 8 29% 12 5 42% 17 6 35% 18 8 44% 11 0 0%
Mucor racemosus M26190 154 90 58% 180 98 54% 101 44 44% 43 19 44% 38 20 53% 51 21 41% 34 12 35% 35 15 43% 14 7 50% 16 5 31%
Mus musculus J01871 X00525 150 66 44% 191 89 47% 104 46 44% 44 20 45% 36 20 56% 40 18 45% 25 9 36% 32 18 56% 22 14 64% 12 7 58%
Naegleria gruberi Thesis, Mullican J. 159 95 60% 176 113 64% 98 43 44% 48 25 52% 46 22 48% 40 18 45% 29 10 34% 26 13 50% 23 13 57% 16 12 75%
Nosema apis U76706 115 46 40% 148 70 47% 58 25 43% 23 10 43% 30 14 47% 26 16 62% 14 4 29% 17 11 65% 16 13 81% 14 7 50%
Nosema apis U97150 115 36 31% 148 67 45% 58 21 36% 23 10 43% 32 12 38% 26 13 50% 15 4 27% 21 10 48% 19 10 53% 10 3 30%
Oryza sativa M11585 M16845 M35384 M82048 M19228 169 77 46% 186 103 55% 114 55 48% 44 22 50% 48 30 63% 51 32 63% 29 21 72% 29 20 69% 19 13 68% 11 4 36%
Physarum polycephalum V01159 V01160 161 63 39% 181 77 43% 110 36 33% 60 30 50% 48 12 25% 46 5 11% 30 5 17% 26 3 12% 25 9 36% 13 0 0%
Phytophthora megasperma X75631 X75632 165 97 59% 199 138 69% 119 71 60% 56 35 63% 38 30 79% 44 28 64% 30 16 53% 32 25 78% 19 15 79% 16 10 63%
Plasmodium falciparum (A gene) U21939 153 80 52% 203 127 63% 123 78 63% 64 38 59% 63 31 49% 32 7 22% 23 8 35% 33 19 58% 26 16 62% 18 8 44%
Plasmodium falciparum (S gene) U48228 149 57 38% 204 86 42% 115 54 47% 78 46 59% 75 36 48% 45 10 22% 32 11 34% 27 12 44% 29 21 72% 16 9 56%
Plasmodium vivax (A gene) NPA 157 83 53% 206 123 60% 124 58 47% 71 37 52% 56 36 64% 33 12 36% 24 11 46% 31 16 52% 25 10 40% 18 6 33%
Plasmodium vivax (O gene) NPA 142 69 49% 179 84 47% 106 48 45% 66 35 53% 63 30 48% 45 17 38% 16 4 25% 26 13 50% 22 11 50% 13 7 54%
Plasmodium vivax (S gene) NPA 111 44 40% 148 78 53% 75 23 31% 58 29 50% 54 21 39% 50 8 16% 22 4 18% 20 8 40% 13 9 69% 18 8 44%
Pneumocystis carinii M86760 168 83 49% 195 122 63% 109 53 49% 49 31 63% 48 29 60% 48 21 44% 33 19 58% 35 15 43% 20 9 45% 14 5 36%
Prorocentrum micans M14649 M19230 X15973 154 54 35% 176 96 55% 96 43 45% 41 15 37% 38 18 47% 44 20 45% 22 9 41% 32 20 63% 17 17 100% 18 12 67%
Rattus norvegicus J01881 V01270 J01438 116 36 31% 150 68 45% 79 19 24% 31 10 32% 25 13 52% 30 10 33% 19 8 42% 19 13 68% 11 8 73% 8 3 38%
Saccharomyces cerevisiae U53879 162 81 50% 201 128 64% 112 54 48% 55 39 71% 50 29 58% 52 21 40% 35 15 43% 34 16 47% 23 17 74% 15 5 33%
Schizosaccharomyces japonicus Z32848 161 69 43% 193 94 49% 114 46 40% 49 22 45% 54 39 72% 44 25 57% 34 24 71% 34 16 47% 19 11 58% 15 3 20%
Schizosaccharomyces pombe J01359 Z19136 X51920 163 71 44% 199 111 56% 116 47 41% 54 22 41% 45 21 47% 54 22 41% 29 9 31% 37 15 41% 23 11 48% 17 8 47%
Sinapis alba X15915 X57137 165 87 53% 188 94 50% 111 54 49% 46 21 46% 44 19 43% 56 22 39% 32 19 59% 26 10 38% 18 8 44% 13 4 31%
Tetrahymena thermophila X54512 155 88 57% 188 106 56% 108 63 58% 42 22 52% 47 30 64% 51 24 47% 36 20 56% 30 12 40% 24 10 42% 24 7 29%
Theileria parva L28036 L28998 L26332 L26331 144 69 48% 174 103 59% 91 44 48% 40 22 55% 40 21 53% 42 19 45% 25 15 60% 29 21 72% 18 13 72% 10 2 20%
Toxoplasma gondii (P) X75453 154 67 44% 178 95 53% 113 57 50% 45 30 67% 36 26 72% 47 34 72% 28 18 64% 27 19 70% 22 20 91% 14 11 79%
Trepomonas agilis AF015455 111 45 41% 130 56 43% 72 31 43% 30 12 40% 25 2 8% 22 7 32% 19 7 37% 19 12 63% 17 8 47% 14 2 14%
Trypanosoma brucei X05682 X14553 X04986 135 49 36% 177 84 47% 118 45 38% 56 18 32% 34 5 15% 28 7 25% 23 6 26% 25 8 32% 13 5 38% 8 2 25%
Vairimorpha necatrix NPA 113 54 48% 155 76 49% 63 29 46% 30 6 20% 33 7 21% 29 13 45% 14 5 36% 17 6 35% 18 15 83% 10 5 50%
Xenopus laevis X59734 151 56 37% 194 77 40% 110 32 29% 47 13 28% 43 18 42% 39 15 38% 33 16 48% 26 17 65% 21 20 95% 15 12 80%
Zea mays NPA 117 43 37% 137 48 35% 82 25 30% 28 8 29% 30 13 43% 32 8 25% 19 6 32% 21 11 52% 10 9 90% 7 6 86%
  1. C, Number of comparative, canonical base-pairs (G-C,C-G,A-U,U-A,G-U,U-G); P, Number of base-pairs predicted in the MFold 3.1 optimal structure prediction that match comparative, canonical base-pairs; A, Accuracy of base-pair predictions in the MFold 3.1 optimal structure prediction, accuracy is calculated by dividing the number of correctly predicted Mfold base pairs by the number of canoncial, comparative base pairs within the RNA Contact Distance category.
  2. NPA, Not Publically Available - The sequence used for analysis has not been deposited in Genbank.