Table 1D View:    

Structure File Format:     

EX IP # IIP RC # IRC RISL L # PG Phylogeny Org [TaxID] Acc Structure Comment
16S 516 272 I 35 NSEQ - 544 N 2 cellular organisms »
Eukaryota »
Heterolobosea »
Schizopyrenida »
Vahlkampfiidae »
... » 		Naegleria australiensis
[51634]		  
   LIT: Nuc. Acids Res. 22(22):4553-4559 (1994).
cellular organisms »
Eukaryota »
Fungi/Metazoa group »
Fungi »
Dikarya »
... » 		Tryblidiopsis pinastri
[66520]		 DQ471035
   unannotated
Ostropa barbara
[271838]		 AY584666
    
Hyperphyscia adglutinata
[116796]		 AJ549803
    
Physcia aipolia
[50936]		 DQ782876
    
AY648101
    
AY648096
    
AY648097
    
Thelocarpella gordensis
[286411]		 AY641014
    
Nephroma parile
[203387]		 AY584680
    
Cetradonia linearis
[83788]		 AY648095
    
Parmotrema tinctorum
[235862]		 AY584659
    
Polysporina simplex
[286400]		 AY641000
    
Lecanora dispersa
[39935]		 L37734
 a.I1  
Acarospora complanata
[168909]		 AF356653
    
Acarospora laqueata
[286393]		 AY640984
    
Acarospora schleicheri
[88748]		 AY640986
    
Acarospora hilaris
[286392]		 AY640983
    
Physcia undulata
[221732]		 AJ549806
    
Glypholecia scabra
[286398]		 AY640991
    
Physcia stellaris
[116821]		 AY648102
    
Physcia dimidiata
[116814]		 AJ506970
    
Pyrenula pseudobufonia
[271832]		 AY641001
    
Diplotomma epipolium
[501307]		 AJ506969
    
Diplotomma alboatrum
[205613]		 AJ549802
    
Physcia caesia
[116813]		 AY648098
    
AY648100
    
Scoliciosporum umbrinum
[93123]		 AY641006
    
Rhizoplaca peltata
[112045]		 AY530887
    
Acarospora clauzadeana
[286396]		 AY640987
    
Bacidia schweinitzii
[161808]		 DQ782884
    
Rinodina oxydata
[205642]		 AJ506971
    
Gymnoderma coccocarpum
[206419]		 AF523362
    
Rhizoplaca huashanensis
[239500]		 AY530885
    
Exophiala dermatitidis
[5970]		 DQ823107
    
IC1 123 334 - 1789 N 8 cellular organisms »
Eukaryota »
Rhodophyta »
Bangiophyceae »
Bangiales »
... » 		Porphyra tenera
[2785]		 AB029882
   P2 P2.1 missing some part
AB100959
    
AB100958
    
AB029883
   P2 P2.1 missing some part
AB000964
    
AB101442
    
AB029884
   P2 P2.1 missing some part
D86237
   intron not annotated
D86236
   intron not annotated
AB029879
    
AB029880
    
AB013175
    
AB013176
    
AB029881
    
Bangia fuscopurpurea
[101920]		 AF172557
 b.I1 Australia/AU; exon sequence from AF175531
AF172556
   France: Nice; exon sequence from AF175535
AF172555
   New Jersey/NJ; exon sequence from AF169335
AF172559
   North Carolina/NC; exon sequence from AF043363
AF172558
   Greece/GR; exon sequence from AF175533
AF172570
   Newfoundland/NF; exon sequence from AF043357
AF172569
   Ireland/IR; exon sequence from AF175534
AB053488
    
AB053489
    
AF172571
   Nova Scotia/NS; exon sequence from AF169337
AF172572
 b.I1 Oregon/OR; exon sequence from AF043358
AF172567
   Victoria/BC2; exon sequence from AF043359
AF172568
   California/CA; exon sequence from AF043356
AF342745
 b.I1  
AF172560
   Germany: Helgoland/HL; exon sequence from AF175532
AF172561
   Massachusetts/MA; exon sequence from AF043362
Porphyra suborbiculata
[76158]		 AB015796
    
AF378664
   synonym Porphyra lilliputiana
AF378655
    
AF378663
   synonym Porphyra lilliputiana
AF378665
   synonym Porphyra lilliputiana
AF378657
    
AF378656
    
AF378662
   synonym Porphyra lilliputiana
AF378658
   synonym Porphyra lilliputiana
AF378649
   synonym Porphyra lilliputiana
AF378654
   synonym Porphyra carolinensis
AF378659
   synonym Porphyra lilliputiana
AF378660
   synonym Porphyra lilliputiana
AF378653
   synonym Porphyra carolinensis
AF378661
   synonym Porphyra lilliputiana
AF133792
   synonym Porphyra carolinensis
AF136424
   synonym Porphyra lilliputiana
AB013180
    
AF378651
   synonym Porphyra lilliputiana
AF378650
   synonym Porphyra lilliputiana
AF378652
    
Porphyra sp. Baleia
[298901]		 AY766358
    
Bangia sp. strain BGA458
[224387]		 AY184341
    
Bangia sp.
[76713]		 AF172578
 b.I1 Virgin Islands/VIS7; exon sequence from AF043364
Bangia atropurpurea
[31347]		 D88387
 b.I1  
AB053491
    
AF172562
   Netherlands/NL: Ysselmeer; exon sequence from AF169341
AF172563
   Ireland/IR; exon sequence from AF043365
AF172565
   England River Thames/BI12; exon sequence from AF043365
AF172566
   Great Lakes/GL; exon sequence from AF043365
AF172564
   Italy/IT; exon sequence from AF043365
Porphyra yezoensis
[2788]		 AY131005
    
D79976
 a.I1  
AB013177
    
AB013178
    
Bangia sp. strain BNS727
[224391]		 AY184345
    
Porphyra umbilicalis
[2786]		 AF172573
   New Jersey/NJ; exon from AF175553
Porphyra purpurea
[2787]		 AF172575
   exon sequence from AF175551
Porphyra sp. Wales SW1
[144555]		 AF172574
   exon from AF175554
Porphyra rakiura
[199481]		 AY139682
    
AF136425
    
AY139684
    
Porphyra onoi
[78445]		 AB015794
    
Bangia sp. strain BDS725
[224384]		 AY184337
    
Porphyra torta
[139733]		 AF172579
   exon sequence from AF175552
Porphyra sp. strain GRB488
[224396]		 AY184350
    
Bangia sp. strain BWP662
[224394]		 AY184348
    
Porphyra sp.
[2790]		 AB013182
    
AF136420
    
Porphyra leucosticta
[35146]		 AF172576
   exon sequence from AF175557
AF342746
 b.I1  
Porphyra sp. strain GRB145
[224395]		 AY184349
    
Porphyra haitanensis
[76159]		 AB015795
    
Porphyra pseudolinearis
[81939]		 AB013185
    
Porphyra lucasii
[209571]		 AY139685
   synonym: Porphyra sp. WELT A23051
Porphyra katadae
[76161]		 AB013184
    
Porphyra nereocystis
[139730]		 AF172577
   exon sequence from AF175542
Porphyra dentata
[76160]		 AB013183
    
Porphyra cinnamomea
[199484]		 AF136418
AF136419
    
Porphyra capensis
[298899]		 AY766361
    
Porphyra kanakaensis
[139729]		 AF172580
   exon sequence from AF175556
Porphyra tenuipedalis
[78446]		 AB015797
    
cellular organisms »
Eukaryota »
Heterolobosea »
Schizopyrenida »
Vahlkampfiidae »
... » 		Naegleria sp.
[37103]		 X79071
    
X79070
    
X79069
    
AJ001399
    
Y10190
    
Naegleria andersoni
[5764]		 Z16417
    
 
   LIT: J. Eukaryot. Microbiol. 40(2):179-187 (1993).
X78280
    
Naegleria clarki
[36333]		 AF338419
    
AF338418
    
AF338417
    
AF338420
    
X78281
    
AF338422
    
Naegleria jamiesoni
[36335]		 X78279
    
Naegleria gruberi
[5762]		 X78278
    
Naegleria italica
[36334]		 X78277
    
cellular organisms »
Eukaryota »
stramenopiles »
Pelagophyceae »
Aureoumbra »
... » 		Aureoumbra lagunensis
[44058]		 U40258
 b.I1 annotated as insertion
cellular organisms »
Eukaryota »
Amoebozoa »
Mycetozoa »
Myxogastria »
... » 		Badhamia gracilis
[227449]		 AJ555451
    
Physarum flavicomum
[35220]		 AJ555453
AJ555454
    
Fuligo septica
[159720]		 AJ555452
    
AJ584697
    
cellular organisms »
Eukaryota »
Fungi/Metazoa group »
Fungi »
Chytridiomycota »
... » 		Spizellomyces punctatus
[109760]		 AY546684
    
cellular organisms »
Eukaryota »
Euglenozoa »
Euglenida »
Heteronematales »
... » 		Ploeotia costata
[211463]		 AF525486
    
cellular organisms »
Eukaryota »
Amoebozoa »
Centramoebida »
Acanthamoebidae »
... » 		Acanthamoeba griffini
[29195]		 S81337
 b.I1  
U02540
U07412
 b.I1  
Acanthamoeba sp. KA/E4
[156883]		 AF349045
    
Acanthamoeba sp. KA/MSS6
[215575]		 AY173014
    
Acanthamoeba sp. KA/MSS7
[215576]		 AY173015
    
Acanthamoeba sp. KA/MSS2
[215574]		 AY173013
    
cellular organisms »
Eukaryota »
Rhodophyta »
Rhodellophyceae »
Rhodellales »
... » 		Rhodella sp. MBIC10593
[284791]		 AB183619
    
IE 109 190 - 622 N 5 cellular organisms »
Eukaryota »
Viridiplantae »
Chlorophyta »
Chlorophyceae »
... » 		Coelastrella multistriata
[75801]		 AB012846
   missing 3' end of intron -- only 50% complete
Coelastrum pseudomicroporum
[183313]		 AF388381
    
Pseudomuriella aurantiaca
[42696]		 X91268
   misspelling Muriella aurantica
AB005748
   misspelling Muriella aurantica
Hariotina reticulata
[183314]		 AF388382
   synonym Coelastrum reticulatum
Pseudodidymocystis planctonica
[113526]		 AB037087
    
Bracteacoccus sp. BC2-1
[209073]		 AF516676
    
Radiococcus polycoccus
[170400]		 AY044650
   synonym Coenochloris polycocca
AY044649
   synonym Coenochloris polycocca
Tetraedron minimum
[302393]		 AY663042
    
Monoraphidium contortum
[307511]		 AY846375
    
Quadrigula closterioides
[82291]		 Y17924
    
Kirchneriella aperta
[117505]		 AJ271859
    
Monoraphidium terrestre
[82352]		 Y17817
    
Podohedriella falcata
[52960]		 X97352
   synonym Ankistrodesmus falcatus
Botryococcus sp. UTEX 2629
[244724]		 AJ581914
    
Scenedesmus sp. CCMP 1625
[155396]		 AF339735
    
Coelastrella multistriata var. corcontica
[113518]		 AB037082
    
Mychonastes sp. 5C5
[178348]		 AF357153
    
cellular organisms »
Eukaryota »
Fungi/Metazoa group »
Fungi »
Dikarya »
... » 		Coenogonium luteum
[146297]		 AF279386
   synonym Dimerella lutea
Mycoarachis inversa
[29864]		 AB013735
   str. ATCC 22107
AB012953
   str. IAM 14639
Rhizoscyphus ericae
[5183]		 AY762620
    
AF462168
   synonym Hymenoscyphus ericae
Capronia pilosella
[45095]		 AY316152
    
Psoroma hypnorum
[191118]		 AY424261
   misannotated
Delitschia didyma
[152651]		 AF242264
    
Bulbithecium hyalosporum
[95318]		 AF096172
    
Daldinia sp. F16
[246476]		 AY315425
    
Massalongia carnosa
[161978]		 AY424265
   misannotated
Hirsutella rhossiliensis
[111463]		 AB109760
    
Tilletiopsis flava
[58914]		 D82819
    
AB045703
    
Xylaria sp. F23
[246502]		 AY315427
    
Nephroma arcticum
[48859]		 AY424262
   misannotated
leotiomycete sp. G21-24-A201
[220856]		 AY190274
    
Entyloma calendulae
[84748]		 DQ663688
    
leotiomycete sp. G21-24-A14
[220855]		 AY190279
    
leotiomycete sp. G21-24-A204
[220857]		 AY190275
    
leotiomycete sp. G21-24-KI129
[220858]		 AY190276
    
leotiomycete sp. G21-24-PU162
[220859]		 AY190277
    
leotiomycete sp. G21-24-RU19
[220860]		 AY190278
    
Cordyceps sp. 97003
[94217]		 AB027329
    
Entyloma holwayi
[63376]		 DQ234562
    
Acrospermum compressum
[152639]		 AF242257
    
Rhexocercosporidium sp. DSE48.1b
[301706]		 AJ864396
    
Leptodontidium quercuum
[75376]		 AF056375
    
Lobaria pulmonaria
[86794]		 AF183935
    
Peltula umbilicata
[169193]		 AF356688
   unannotated
DQ782887
   misannotated
Caliciopsis pinea
[152644]		 AF242260
    
Hymenelia epulotica
[146300]		 AF279393
    
Sagenomella diversispora
[89792]		 AB024588
    
AB024589
    
Geosmithia viridis
[106120]		 AB033527
    
Roccella canariensis
[72318]		 AF110342
    
AF110345
    
AF110344
    
AF110343
    
Roccella tuberculata
[91947]		 AF110350
    
AF110351
    
Roccella boergesenii
[279123]		 AY548807
    
Exobasidium gracile
[190086]		 DQ785786
    
Cordyceps prolifica
[94209]		 AB027324
    
Cordyceps ramosopulvinata
[94211]		 AB027326
    
Barrmaelia oxyacanthae
[101485]		 AF064048
    
Cordyceps kanzashiana
[94210]		 AB027325
    
Arthonia dispersa
[242232]		 AY571379
    
Byssochlamys zollerniae
[89138]		 AY526485
    
Colacogloea peniophorae
[5233]		 DQ234564
    
Mycocalicium albonigrum
[39942]		 L37736
    
Geoglossum nigritum
[107442]		 AY544694
    
Penicillium oblatum
[106126]		 AB033529
    
Cintractia axicola
[63370]		 DQ631907
    
Sakaguchia dacryoidea
[106023]		 D13459
   was Rhodosporidium dacryoidum
Penicillium argillaceum
[103783]		 AB033533
    
AB033532
    
AB033531
    
Ustilentyloma fluitans
[63397]		 AY124481
    
Trichocoma paradoxa
[76771]		 AB003944
    
AB003943
    
Xylariales sp. F15
[246511]		 AY315424
    
Pannaria conoplea
[191109]		 AY424260
    
Xylariales sp. F17
[246512]		 AY315426
    
Lecanactis abietina
[40113]		 AY548805
    
Exophiala dermatitidis
[5970]		 Z75303
    
Roccella fimbriata
[91945]		 AF110339
    
cellular organisms »
Eukaryota »
Viridiplantae »
Chlorophyta »
Trebouxiophyceae »
... » 		Trebouxia arboricola
[53268]		 Z68705
    
Chlorella sp. 2A3
[178344]		 AF357146
    
'Chlorella' luteoviridis
[31301]		 X73998
   synonym Chlorella luteoviridis
X73997
   synonym Chlorella luteoviridis
Actinastrum hantzschii
[55402]		 AF288365
    
Koliella spiculiformis
[154509]		 AF278744
    
'Chlorella' saccharophila
[3082]		 X73991
   synonym Chlorella saccharophila
AB058310
    
Chlorella sp. BC4-VF9
[209072]		 AF516675
    
Chlorella pyrenoidosa
[3078]		 AB240151
    
Chlorella sp. MBIC10744
[284943]		 AB183634
    
Stichococcus sp. MBIC10457
[284983]		 AB183599
    
Coccomyxa pringsheimii
[312852]		 AY762603
    
Neochloris aquatica
[3099]		 UNP00779
   Louise Lewis. J.Phycol. 28:375 (1992).
Amphikrikos cf. nanus Hegewald 1995-26
[120763]		 AF228690
   synonym Amphikrikos sp. Hegewald 1995-26
Stichococcus bacillaris
[37433]		 AB055864
    
Trebouxia usneae
[53266]		 Z68702
    
cellular organisms »
Eukaryota »
Viridiplantae »
Streptophyta »
Klebsormidiophyceae »
... » 		Klebsormidium subtilissimum
[184584]		 AF408241
   misannotated
Klebsormidium flaccidum
[3175]		 X75520
    
Klebsormidium nitens
[105231]		 AJ250112
    
AF408242
   misannotated
cellular organisms »
Eukaryota »
Rhizaria »
Cercozoa »
Plasmodiophorida »
... » 		Plasmodiophora brassicae
[37360]		 U18981
    
U 5 NSEQ - 401 N 1 cellular organisms »
Eukaryota »
Fungi/Metazoa group »
Fungi »
Dikarya »
... » 		Sarcinomyces phaeomuriformis
[66227]		 X80710
   LIT: Antonie Van Leeuwenhoek 68(1):19-33 (1995).
Geosmithia argillacea
[69808]		 AB032108
AB032109
    
AB032116
AB032117
    
AB032112
AB032113
    
Penicillium sabulosum
[106127]		 AB033530