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Table 2B: Number of rRNA Introns, Intron Position, and Phylogenetic Group for Intron Type IC1

Structure File Format:PS  PDF  BPSEQ 

EX	RC	IP	L	Phylogeny	Organism [TaxID]	Accession	Structure	Comment
16S	IC1	516	N	cellular organisms » Eukaryota » Amoebozoa » Centramoebida » Acanthamoebidae » ...	Acanthamoeba griffini [29195]	U02540 U07412	b.I1
						S81337	b.I1
					Acanthamoeba sp. KA/E4 [156883]	AF349045
					Acanthamoeba sp. KA/MSS2 [215574]	AY173013
					Acanthamoeba sp. KA/MSS6 [215575]	AY173014
					Acanthamoeba sp. KA/MSS7 [215576]	AY173015
				cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Badhamia gracilis [227449]	AJ555451
					Fuligo septica [159720]	AJ584697
						AJ555452
					Physarum flavicomum [35220]	AJ555453 AJ555454
				cellular organisms » Eukaryota » Euglenozoa » Euglenida » Heteronematales » ...	Ploeotia costata [211463]	AF525486
				cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Spizellomyces punctatus [109760]	AY546684
				cellular organisms » Eukaryota » Heterolobosea » Schizopyrenida » Vahlkampfiidae » ...	Naegleria andersoni [5764]	Z16417
								LIT: J. Eukaryot. Microbiol. 40(2):179-187 (1993).
						X78280
					Naegleria clarki [36333]	AF338417
						AF338418
						AF338419
						AF338420
						AF338422
						X78281
					Naegleria gruberi [5762]	X78278
					Naegleria italica [36334]	X78277
					Naegleria jamiesoni [36335]	X78279
					Naegleria sp. [37103]	X79069
						X79070
						X79071
						AJ001399
						Y10190
				cellular organisms » Eukaryota » Rhodophyta » Bangiophyceae » Bangiales » ...	Bangia atropurpurea [31347]	AF172563		Ireland/IR; exon sequence from AF043365
						AF172565		England River Thames/BI12; exon sequence from AF043365
						AF172562		Netherlands/NL: Ysselmeer; exon sequence from AF169341
						AB053491
						D88387	b.I1
						AF172564		Italy/IT; exon sequence from AF043365
						AF172566		Great Lakes/GL; exon sequence from AF043365
					Bangia fuscopurpurea [101920]	AF172571		Nova Scotia/NS; exon sequence from AF169337
						AF172557	b.I1	Australia/AU; exon sequence from AF175531
						AF172556		France: Nice; exon sequence from AF175535
						AF172555		New Jersey/NJ; exon sequence from AF169335
						AF172559		North Carolina/NC; exon sequence from AF043363
						AF172558		Greece/GR; exon sequence from AF175533
						AF172570		Newfoundland/NF; exon sequence from AF043357
						AF172569		Ireland/IR; exon sequence from AF175534
						AB053488
						AB053489
						AF172572	b.I1	Oregon/OR; exon sequence from AF043358
						AF172567		Victoria/BC2; exon sequence from AF043359
						AF172568		California/CA; exon sequence from AF043356
						AF342745	b.I1
						AF172560		Germany: Helgoland/HL; exon sequence from AF175532
						AF172561		Massachusetts/MA; exon sequence from AF043362
					Bangia sp. strain BDS725 [224384]	AY184337
					Bangia sp. strain BGA458 [224387]	AY184341
					Bangia sp. strain BNS727 [224391]	AY184345
					Bangia sp. strain BWP662 [224394]	AY184348
					Bangia sp. [76713]	AF172578	b.I1	Virgin Islands/VIS7; exon sequence from AF043364
					Porphyra capensis [298899]	AY766361
					Porphyra cinnamomea [199484]	AF136418 AF136419
					Porphyra dentata [76160]	AB013183
					Porphyra haitanensis [76159]	AB015795
					Porphyra kanakaensis [139729]	AF172580		exon sequence from AF175556
					Porphyra katadae [76161]	AB013184
					Porphyra leucosticta [35146]	AF172576		exon sequence from AF175557
AF342746	b.I1
Porphyra lucasii [209571]	AY139685		synonym: Porphyra sp. WELT A23051
Porphyra nereocystis [139730]	AF172577		exon sequence from AF175542
Porphyra onoi [78445]	AB015794
Porphyra pseudolinearis [81939]	AB013185
Porphyra purpurea [2787]	AF172575		exon sequence from AF175551
Porphyra rakiura [199481]	AF136425
	AY139682
	AY139684
Porphyra sp. [2790]	AB013182
	AF136420
Porphyra suborbiculata [76158]	AF136424		synonym Porphyra lilliputiana
	AF378657
	AF378662		synonym Porphyra lilliputiana
	AF378663		synonym Porphyra lilliputiana
	AF378664		synonym Porphyra lilliputiana
	AF378665		synonym Porphyra lilliputiana
	AF378655
	AF378656
	AF378650		synonym Porphyra lilliputiana
	AF378651		synonym Porphyra lilliputiana
	AB013180
	AF378652
	AF378660		synonym Porphyra lilliputiana
	AF378661		synonym Porphyra lilliputiana
	AB015796
	AF133792		synonym Porphyra carolinensis
	AF378653		synonym Porphyra carolinensis
	AF378654		synonym Porphyra carolinensis
	AF378649		synonym Porphyra lilliputiana
	AF378658		synonym Porphyra lilliputiana
	AF378659		synonym Porphyra lilliputiana
Porphyra tenera [2785]	AB029880
	AB029879
	AB013175
	AB013176
	AB029881
	D86236		intron not annotated
	D86237		intron not annotated
	AB029883		P2 P2.1 missing some part
	AB000964
	AB029884		P2 P2.1 missing some part
	AB100958
	AB100959
	AB029882		P2 P2.1 missing some part
	AB101442
Porphyra tenuipedalis [78446]	AB015797
Porphyra torta [139733]	AF172579		exon sequence from AF175552
Porphyra umbilicalis [2786]	AF172573		New Jersey/NJ; exon from AF175553
Porphyra yezoensis [2788]	AY131005
	D79976	a.I1
	AB013177
	AB013178
Porphyra sp. Baleia [298901]	AY766358
Porphyra sp. Wales SW1 [144555]	AF172574		exon from AF175554
Porphyra sp. strain GRB145 [224395]	AY184349
Porphyra sp. strain GRB488 [224396]	AY184350
cellular organisms » Eukaryota » Rhodophyta » Rhodellophyceae » Rhodellales » ...	Rhodella sp. MBIC10593 [284791]	AB183619
cellular organisms » Eukaryota » stramenopiles » Pelagophyceae » Aureoumbra » ...	Aureoumbra lagunensis [44058]	U40258	b.I1	annotated as insertion

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