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Table 2B: Number of rRNA Introns, Intron Position, and Phylogenetic Group for Intron Type IE

Structure File Format:PS  PDF  BPSEQ 

EX	RC	IP	L	Phylogeny	Organism [TaxID]	Accession	Structure	Comment
16S	IE	TBD	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Exophiala prototropha [86340]	X91901		synonym Pullularia prototropha
						X91899		synonym Pullularia prototropha
					Neonectria galligena [56674]	Y16424		synonym Nectria galligena
						Y16423		3' end uncertain; synonym Nectria galligena
						Y16422		synonym Nectria galligena
					Graphiola phoenicis [5276]	AB000962
						D63930		IP possible 516
		516	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Leptodontidium quercuum [75376]	AF056375
					Capronia pilosella [45095]	AY316152
					Exophiala dermatitidis [5970]	Z75303
					Caliciopsis pinea [152644]	AF242260
					Byssochlamys zollerniae [89138]	AY526485
					Trichocoma paradoxa [76771]	AB003944
						AB003943
					Geosmithia viridis [106120]	AB033527
					Penicillium argillaceum [103783]	AB033533
						AB033532
						AB033531
					Penicillium oblatum [106126]	AB033529
					Sagenomella diversispora [89792]	AB024589
						AB024588
					Mycocalicium albonigrum [39942]	L37736
					Geoglossum nigritum [107442]	AY544694
					Pannaria conoplea [191109]	AY424260
					Psoroma hypnorum [191118]	AY424261		misannotated
					Lobaria pulmonaria [86794]	AF183935
					Nephroma arcticum [48859]	AY424262		misannotated
					Massalongia carnosa [161978]	AY424265		misannotated
					Coenogonium luteum [146297]	AF279386		synonym Dimerella lutea
					Hymenelia epulotica [146300]	AF279393
					Peltula umbilicata [169193]	DQ782887		misannotated
						AF356688		unannotated
					Arthonia dispersa [242232]	AY571379
					Lecanactis abietina [40113]	AY548805
					Roccella boergesenii [279123]	AY548807
					Roccella canariensis [72318]	AF110342
						AF110344
						AF110345
						AF110343
					Roccella fimbriata [91945]	AF110339
					Roccella tuberculata [91947]	AF110351
						AF110350
					Acrospermum compressum [152639]	AF242257
					Delitschia didyma [152651]	AF242264
					Rhizoscyphus ericae [5183]	AF462168		synonym Hymenoscyphus ericae
						AY762620
					Rhexocercosporidium sp. DSE48.1b [301706]	AJ864396
					leotiomycete sp. G21-24-A14 [220855]	AY190279
					leotiomycete sp. G21-24-A201 [220856]	AY190274
					leotiomycete sp. G21-24-A204 [220857]	AY190275
					leotiomycete sp. G21-24-KI129 [220858]	AY190276
					leotiomycete sp. G21-24-PU162 [220859]	AY190277
					leotiomycete sp. G21-24-RU19 [220860]	AY190278
					Mycoarachis inversa [29864]	AB013735		str. ATCC 22107
						AB012953		str. IAM 14639
					Cordyceps kanzashiana [94210]	AB027325
					Cordyceps prolifica [94209]	AB027324
					Cordyceps ramosopulvinata [94211]	AB027326
					Cordyceps sp. 97003 [94217]	AB027329
					Bulbithecium hyalosporum [95318]	AF096172
					Hirsutella rhossiliensis [111463]	AB109760
					Barrmaelia oxyacanthae [101485]	AF064048
					Daldinia sp. F16 [246476]	AY315425
					Xylaria sp. F23 [246502]	AY315427
Xylariales sp. F15 [246511]	AY315424
Xylariales sp. F17 [246512]	AY315426
Sakaguchia dacryoidea [106023]	D13459					was Rhodosporidium dacryoidum
Ustilentyloma fluitans [63397]	AY124481
Colacogloea peniophorae [5233]	DQ234564
Entyloma calendulae [84748]	DQ663688
Entyloma holwayi [63376]	DQ234562
Exobasidium gracile [190086]	DQ785786
Tilletiopsis flava [58914]	D82819
	AB045703
Cintractia axicola [63370]	DQ631907
cellular organisms » Eukaryota » Rhizaria » Cercozoa » Plasmodiophorida » ...	Plasmodiophora brassicae [37360]	U18981
cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Mychonastes sp. 5C5 [178348]	AF357153
	Pseudomuriella aurantiaca [42696]	X91268		misspelling Muriella aurantica
		AB005748		misspelling Muriella aurantica
	Radiococcus polycoccus [170400]	AY044649		synonym Coenochloris polycocca
		AY044650		synonym Coenochloris polycocca
	Coelastrella multistriata [75801]	AB012846		missing 3' end of intron -- only 50% complete
	Coelastrella multistriata var. corcontica [113518]	AB037082
	Coelastrum pseudomicroporum [183313]	AF388381
	Hariotina reticulata [183314]	AF388382		synonym Coelastrum reticulatum
	Pseudodidymocystis planctonica [113526]	AB037087
	Scenedesmus sp. CCMP 1625 [155396]	AF339735
	Kirchneriella aperta [117505]	AJ271859
	Monoraphidium contortum [307511]	AY846375
	Monoraphidium terrestre [82352]	Y17817
	Podohedriella falcata [52960]	X97352		synonym Ankistrodesmus falcatus
	Quadrigula closterioides [82291]	Y17924
	Tetraedron minimum [302393]	AY663042
	Botryococcus sp. UTEX 2629 [244724]	AJ581914
	Bracteacoccus sp. BC2-1 [209073]	AF516676
cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella pyrenoidosa [3078]	AB240151
	Chlorella sp. 2A3 [178344]	AF357146
	Chlorella sp. MBIC10744 [284943]	AB183634
	Koliella spiculiformis [154509]	AF278744
	Amphikrikos cf. nanus Hegewald 1995-26 [120763]	AF228690		synonym Amphikrikos sp. Hegewald 1995-26
	Stichococcus bacillaris [37433]	AB055864
	Stichococcus sp. MBIC10457 [284983]	AB183599
	Trebouxia arboricola [53268]	Z68705
	Trebouxia usneae [53266]	Z68702
	Actinastrum hantzschii [55402]	AF288365
	'Chlorella' luteoviridis [31301]	X73997		synonym Chlorella luteoviridis
		X73998		synonym Chlorella luteoviridis
	'Chlorella' saccharophila [3082]	X73991		synonym Chlorella saccharophila
		AB058310
	Chlorella sp. BC4-VF9 [209072]	AF516675
	Coccomyxa pringsheimii [312852]	AY762603
	Neochloris aquatica [3099]	UNP00779		Louise Lewis. J.Phycol. 28:375 (1992).
cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Klebsormidiophyceae » ...	Klebsormidium flaccidum [3175]	X75520
	Klebsormidium nitens [105231]	AF408242		misannotated
		AJ250112
	Klebsormidium subtilissimum [184584]	AF408241		misannotated
568	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Scotiellopsis oocystiformis [75804]	AB012848		missing P8' to 3' end of int.
651	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella sp. AN 1-3 [221618]	AY195964		intron in variable region near E. coli position 651
			uncultured Chlorella [254346]	AB206547		intron in variable region near E. coli position 651
				AB206548		intron in variable region near E. coli position 651
943	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella sp. MRBG1 [335040]	AB219527
			uncultured Chlorella [254346]	AB206546
956	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Spizellomyces kniepii [109892]	AF164238		no 5' exon; missing 5' end of intron
989	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Exophiala nigra [52866]	X91897	b.I1	was Nadsoniella nigra
				X80707		was Nadsoniella nigra
			Paecilomyces sp. 97014 [130800]	AB044633
			Trichoglossum hirsutum [265104]	AY544697
			Conotrema populorum [56759]	U86582
			Acrospermum compressum [152639]	AF242257
			Rhexocercosporidium sp. DSE48.1b [301706]	AJ864396
			leotiomycete sp. G21-24-KI129 [220858]	AY190276
			leotiomycete sp. G21-24-PU162 [220859]	AY190277
			Cordyceps kanzashiana [94210]	AB027325
			Cordyceps prolifica [94209]	AB027324
			Cordyceps ramosopulvinata [94211]	AB027326
			Cordyceps sp. 97003 [94217]	AB027329
			Melanopsamma pomiformis [80381]	AY489677
			Thyridium vestitum [265083]	AY544715
			Cryptendoxyla hypophloia [64883]	AF015912	b.I1
			Rosellinia necatrix [77044]	AB014044
			Xylaria polymorpha [77046]	AB014043
			Exobasidium gracile [190086]	DQ785786
		cellular organisms » Eukaryota » Rhodophyta » Florideophyceae » Hildenbrandiales » ...	Hildenbrandia rubra [31481]	AY571893
1199	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Karlingiomyces sp. JEL93 [110075]	AF164278 AF164279 AF164280
			Oedogoniomyces sp. CR84 [252682]	AY635839
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Exophiala calicioides [135514]	AB007685		was Graphium calicioides
				AB007686		was Graphium calicioides
			Paecilomyces pascua [106128]	AB033528
			Penicillium oblatum [106126]	AB033529
			Penicillium radicum [228353]	AY256855
			Penicillium sabulosum [106127]	AB033530
			Cladonia merochlorophaea [5200]	Z14025		Formerly Cladonia merochlorophaea Asah
			Ochrolechia parella [129506]	AF274109
			Roccella boergesenii [279123]	AY548807
			Hysteropatella clavispora [100029]	AY541483
			Dendryphiopsis atra [85923]	AF053731
			Lewia infectoria [45303]	AY154692
				AY154690
				AY154688
			Sclerotinia trifoliorum [28548]	AY187075
			leotiomycete sp. G21-24-A201 [220856]	AY190274
			leotiomycete sp. G21-24-A204 [220857]	AY190275
			leotiomycete sp. G21-24-PU162 [220859]	AY190277
			leotiomycete sp. G21-24-RU19 [220860]	AY190278
			Bionectria ochroleuca [29856]	AB012952		synonym Nectria ochroleuca
				AB013010		synonyms Nectria aureofulva, Bionectria aureofulva
			Hydropisphaera erubescens [110568]	AY545722
			Claviceps africana [83212]	AF281176
			Claviceps panicoidearum [379502]	AB255605		unannotated
				AB255604		unannotated
			Claviceps sorghicola [83213]	AF281177
			Epichloe typhina [5113]	AB105953
				AB105952
			Metarhizium flavoviride var. minus [92631]	AF280632
			Neotyphodium uncinatum [5050]	AB102783
			Paecilomyces cicadae [181121]	AB086630
				AB086631
				AB085886
				AB085888
				AB085887
			Tolypocladium inflatum [29910]	AB044634
				AY245674
				AB255606		unannotated
			Cordyceps bassiana [176275]	AB237657
				AB079609		GenBank anamorph Beauveria bassiana
				AB079125		GenBank anamorph Beauveria bassiana
			Cordyceps brongniartii [118266]	AB258368
				AB258367
				AB237658		unannotated
				AB106649
				AB027335
			Cordyceps cardinalis [224370]	AB237660		unannotated
			Cordyceps kanzashiana [94210]	AB027325
			Cordyceps kyushuensis [259534]	AY465958
			Cordyceps militaris [73501]	AB027333
				AB233336
				AB070373
				AF327392
				AB070374
				AB070375
				AB084156
			Cordyceps prolifica [94209]	AB027324
			Cordyceps pruinosa [129524]	AB044629
			Cordyceps ramosopulvinata [94211]	AB027326
			Cordyceps sp. 97005 [130799]	AB044630
			Cordyceps sp. 97009 [94216]	AB027332
			Cordyceps sp. BCMU CN03 [343855]	AB233335
Cordyceps takaomontana [131074]	AB044631
Torrubiella flava [219582]	AB100609
Bulbithecium hyalosporum [95318]	AF281666
Fusarium phaseoli [120645]	AF150483		GenBank synonym Fusarium solani f. sp. phaseoli
	AF150481		GenBank synonym Fusarium solani f. sp. phaseoli
Fusarium solani f. batatas [121868]	AF150484
Fusarium solani f. robiniae [121877]	AF150489
	AF150490
Fusarium solani f. xanthoxyli [121863]	AF150492
	AF150491
Verticillium fungicola var. flavidum [170723]	AB112030
Natantispora retorquens [85911]	AF352086		unannotated; synonym Halosarpheia retorquens
Graphium basitruncatum [118975]	AB038421
Graphium penicillioides [67620]	AB007682
Gondwanamyces proteae [5156]	AY271804
Papulosa amerospora [101488]	AF064050
Chaetosphaeria curvispora [260530]	AY502933
Menispora tortuosa [139972]	AY544723
Cryphonectria parasitica [5116]	L42441	a.I1
Cryphonectria radicalis [40262]	L42442
Apioplagiostoma aceriferum [148325]	AF281665
Leucostoma cinctum [105485]	AF191168
Cryptendoxyla hypophloia [64883]	AF281670
Xylaria polymorpha [77046]	AB014043
Xylariales sp. F15 [246511]	AY315424
Xylariales sp. F17 [246512]	AY315426
Bensingtonia sakaguchii [109612]	AB001747
	AB001746
Bensingtonia thailandica [119489]	AB040116
	AB040117
	AB040115
	AB040114
Sporobolomyces taupoensis [69980]	D66886
Microbotryum violaceum [5272]	DQ789983
Tilletiopsis oryzicola [132575]	AB045705
Exobasidium gracile [190086]	DQ785786
Tilletiopsis flava [58914]	AB045703
	D82819
Cintractia sorghi-vulgaris [293803]	DQ234548
1201	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Geosmithia viridis [106120]	AB033527		aligns well with 1199 IE introns -- error in GenBank entry?

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