| EX | RC | IP | L | Phylogeny | Organism [TaxID] | Accession | Structure | Comment |
|---|---|---|---|---|---|---|---|---|
| 23S | IB4 | TBD | N | cellular organisms » Bacteria » Thermotogae » Thermotogae (class) » Thermotogales » ... |
Thermotoga neapolitana DSM 4359 [309803] |
CP000916 |
||
| 1917 | C | cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ... |
Chlorosarcina brevispinosa [163096] |
L49150 |
||||
| M | cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ... |
Chaetosphaeridium globosum [96477] |
AF494279 |
|||||
| N | cellular organisms » Bacteria » Proteobacteria » Gammaproteobacteria » Legionellales » ... |
Coxiella burnetii [777] |
EF632073 |
|||||
| Coxiella burnetii CbuG_Q212 [434923] |
CP001019 |
|||||||
| Coxiella burnetii CbuK_Q154 [434924] |
CP001020 |
|||||||
| Coxiella burnetii RSA 331 [360115] |
CP000890 |
|||||||
| Coxiella burnetii RSA 493 [227377] |
AE016828 |
|||||||
| AE016960 |
||||||||
| 1923 | C | cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ... |
Stigeoclonium helveticum [55999] |
L49157 |
||||
| Carteria lunzensis [160071] |
L42986 |
|||||||
| Chlamydomonas monadina [47904] |
L49149 |
|||||||
| Chlamydomonas mutabilis [47905] |
L42859 |
|||||||
| Lobochlamys segnis [52035] |
L43503 |
synonym Chlamydomonas pallidostigmatica | ||||||
| Chlorogonium elongatum [52029] |
L42860 |
|||||||
| Chlorococcum echinozygotum [48000] |
L44123 |
|||||||
| Scenedesmus obliquus [3088] |
L43360 |
|||||||
| Ankistrodesmus stipitatus [3109] |
L42984 |
|||||||
| M | cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ... |
Russulaceae sp. Type T [103200] |
AF176829 |
|||||
| Suillus luteus [5384] |
L47586 |
a.I1 | ||||||
| cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ... |
Chara vulgaris [55564] |
AY267353 |
||||||
| 1931 | C | cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ... |
Chlamydomonas callosa [51692] |
L43501 |
||||
| Chlamydomonas frankii [28455] |
L43352 |
|||||||
| Chlamydomonas geitleri [28456] |
L43353 |
|||||||
| Chlamydomonas komma [28459] |
L43502 |
|||||||
| Chlamydomonas mexicana [28460] |
L49148 |
|||||||
| Lobochlamys segnis [52035] |
L43503 |
synonym Chlamydomonas pallidostigmatica | ||||||
| Dunaliella parva [3048] |
L43540 |
|||||||
| Haematococcus lacustris [107616] |
L49151 |
|||||||
| Chlorosarcina brevispinosa [163096] |
L49150 |
|||||||
| Oedogonium cardiacum [55995] |
EU677193 |
|||||||
| EU677193 |
||||||||
| cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyta incertae sedis » ... |
Oltmannsiellopsis viridis [51324] |
DQ291132 |
||||||
| DQ291132 |
||||||||
| cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Pedinophyceae » ... |
Pedinomonas tuberculata [160064] |
L43541 |
||||||
| cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ... |
Monomastix sp. M722 [141717] |
L44124 |
||||||
| Monomastix sp. OKE-1 [141716] |
L49154 |
synonym Monomastix sp. CL-1997 | ||||||
| Pterosperma cristatum [38836] |
L43359 |
|||||||
| cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ... |
Neochloris aquatica [3099] |
L49155 |
||||||
| M | cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ... |
Monomastix sp. M722 [141717] |
AY008340 |
IP noted by authors in manuscript | ||||
| Monomastix sp. OKE-1 [141716] |
AY008339 |
IP noted by authors in manuscript | ||||||
| cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ... |
Chlorella vulgaris [3077] |
AY008337 |
IP noted by authors in manuscript | |||||
| cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Mesostigmatophyceae » ... |
Mesostigma viride [41882] |
AF353999 |
||||||
| cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ... |
Chara vulgaris [55564] |
AY267353 |
||||||
| N | cellular organisms » Bacteria » Thermotogae » Thermotogae (class) » Thermotogales » ... |
Thermotoga naphthophila [93930] |
AJ556785 |
|||||
| AJ872268 |
||||||||
| Thermotoga neapolitana [2337] |
AJ556788 |
|||||||
| AJ556787 |
||||||||
| AJ556784 |
||||||||
| AJ872266 |
||||||||
| AJ872267 |
||||||||
| Thermotoga petrophila [93929] |
AJ556786 |
|||||||
| AJ872269 |
||||||||
| Thermotoga sp. FjSS3-B.1 [228343] |
AJ556789 |
|||||||
| Thermotoga sp. RQ7 [126738] |
AJ556790 |
|||||||
| AJ872270 |
||||||||
| Thermotoga sp. SG1 [126739] |
AJ872271 |
|||||||
| AJ556792 |
||||||||
| Thermotoga sp. SL7 [228344] |
AJ556791 |
|||||||
| Thermotoga subterranea [39100] |
AJ556793 |
|||||||
| 2262 | C | cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ... |
Chlamydomonas callosa [51692] |
L43501 |
||||
| Chlamydomonas frankii [28455] |
L43352 |
|||||||
| Chlamydomonas monadina [47904] |
L49149 |
|||||||
| Chlamydomonas sp. SAG 66.72 [163103] |
L43539 |
|||||||
| Lobochlamys segnis [52035] |
L43503 |
synonym Chlamydomonas pallidostigmatica | ||||||
| cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ... |
Trebouxia aggregata [160068] |
L43542 |
||||||
| M | cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ... |
Chara vulgaris [55564] |
AY267353 |
|||||
| 2500 | C | cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ... |
Stigeoclonium helveticum [55999] |
L49157 |
||||
| Chlamydomonas applanata [35704] |
L42989 |
synonym Chlamydomonas humicola | ||||||
| Chlamydomonas frankii [28455] |
L43352 |
|||||||
| Chlamydomonas monadina [47904] |
L49149 |
|||||||
| Chlamydomonas starrii [28463] |
L43504 |
|||||||
| Chlamydomonas zebra [28464] |
L43356 |
|||||||
| Dunaliella parva [3048] |
L43540 |
|||||||
| Ankistrodesmus stipitatus [3109] |
L42984 |
|||||||
| cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyta incertae sedis » ... |
Oltmannsiellopsis viridis [51324] |
DQ291132 |
||||||
| DQ291132 |
||||||||
| cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Pedinophyceae » ... |
Pedinomonas tuberculata [160064] |
L43541 |
||||||
| cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ... |
Monomastix sp. OKE-1 [141716] |
L49154 |
synonym Monomastix sp. CL-1997 | |||||
| cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ... |
Trebouxia aggregata [160068] |
L43542 |
||||||
| Neochloris aquatica [3099] |
L49155 |
|||||||
| cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ... |
Trichosarcina mucosa [141643] |
AY008341 |
||||||
| cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ... |
Chara corallina [43696] |
AF393579 |
||||||
| Chara sp. CL-2002-1 [184708] |
AF393584 |
|||||||
| Chara sp. CL-2002-2 [184707] |
AF393586 |
|||||||
| Chara vulgaris [55564] |
DQ229107 |
|||||||
| DQ229107 |
||||||||
| Nitella sp. CL-2002 [184709] |
AF393603 |
|||||||
| M | cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ... |
Agrocybe aegerita [5400] |
AF087656 |
|||||
| Suillus luteus [5384] |
L47586 |
a.I1 | ||||||
| cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyta incertae sedis » ... |
Oltmannsiellopsis viridis [51324] |
DQ365900 |
||||||
| cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ... |
Pseudendoclonium akinetum [160070] |
AY359242 |
||||||
| cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ... |
Chara vulgaris [55564] |
AY267353 |
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Table 2B: Number of rRNA Introns, Intron Position, and Phylogenetic Group for Intron Type IB4
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