Comparative RNA Web Site and Project The Gutell Lab

Table 2B: Number of rRNA Introns, Intron Position, and Phylogenetic Group for Each Intron Type

Structure File Format:PS  PDF  BPSEQ 

EX	RC	IP	L	Phylogeny	Organism [TaxID]	Accession	Structure	Comment
23S	I	569	N	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Fuligo septica [159720]	AJ584697
		730	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas indica [28457]	Z17228		LIT: J. Mol. Biol. 232:446-467 (1993).
		779	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Buellia geophila [205604]	AY773917
					Buellia griseovirens [205605]	AY773910
					Diplotomma alboatrum [205613]	AY452500
					Diplotomma epipolium [501307]	AY773916
					Physcia aipolia [50936]	AY773914
					Physcia stellaris [116821]	AY773912
					Physcia tenella [116822]	AY773908
					Physconia enteroxantha [114787]	AY773909
					Physconia grisea [114791]	AY773921
					Rinodina atrocinerea [144699]	AY773923
					Rinodina capensis [299119]	AY773924
					Rinodina milvina [205640]	AY773922
		798	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pyrenula pseudobufonia [271832]	AY640962
					Pyrgillus javanicus [279161]	DQ823103
					Dermatocarpon miniatum [172328]	AY584644
					Endocarpon pallidulum [396380]	DQ823097
					Verrucaria pachyderma [168926]	AF356668
					Trichoglossum hirsutum [265104]	AY533014
						AY640976
					Acarospora schleicheri [88748]	AY640945
					Glypholecia scabra [286398]	AY640951
					Biatoridium monasteriense [286569]	AY640947
					Arthrorhaphis citrinella [146290]	AF279376
					Tholurna dissimilis [211490]	AY453644
					Cladonia caroliniana [174049]	AY584640
					Rhizoplaca chrysoleuca [112062]	AY648104
					Rhizoplaca huashanensis [239500]	AY648105
					Melanelixia fuliginosa [180412]	AJ421428		synonym: Melanelia fuliginosa
					Buellia griseovirens [205605]	AY773910
					Physcia aipolia [50936]	AY773914
					Physcia stellaris [116821]	AY773912
					Physcia tenella [116822]	AY773908
					Physconia distorta [114786]	AY773913
					Physconia enteroxantha [114787]	AY773909
					Physconia perisidiosa [114789]	AY773911
					Koerberiella wimmeriana [273088]	AY532986
					Protoblastenia rupestris [258902]	AY533008
					Bacidia rosella [93112]	AY300829
					Bacidia schweinitzii [161808]	DQ782911
					Anzina carneonivea [129529]	AY212829
					Trapelia chiodectonoides [223410]	AY212847
					Coenogonium leprieurii [185321]	AF465442
					Gyalecta hypoleuca [185327]	AF465453
					Gyalecta jenensis [146295]	AF465450
					Gyalecta thelotremella [185328]	AF465455
					Porina guentheri [146306]	AF279405
					Ostropa barbara [271838]	AY584642
					Stictis radiata [38076]	AF356663
					Hymenelia epulotica [146300]	AF279394
					Hymenelia lacustris [196135]	AY533006
						AY640953
					Pertusaria hymenea [133177]	AF279297
					Pertusaria kalelae [133180]	AF279298
					Pertusaria oculata [267812]	AY568005
					Roccella boergesenii [279123]	AY548814
		800	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Acarospora cervina [286391]	AY640941
					Acarospora complanata [168909]	AF356654
					Acarospora hilaris [286392]	AY640942
					Acarospora laqueata [286393]	AY640943
					Pleopsidium chlorophanum [247144]	AY640960
					Polysporina simplex [286400]	AY640961
					Sarcogyne regularis var. regularis [286403]	AY640964
Umbilicaria vellea [87287]	AY645340
Notolecidea subcontinua [273062]	AY532987
Calicium adaequatum [262410]	AY452503
	AY452502
Calicium glaucellum [262413]	AY453646
Hypocenomyce scalaris [318760]	DQ782914
Rinodina tunicata [144718]	AY773920
	AF457568
Nephroma arcticum [48859]	AF286828
Massalongia carnosa [161978]	AF286827
Tremolecia atrata [273074]	AY533007
958	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas indica [28457]	Z17228		LIT: J. Mol. Biol. 232:446-467 (1993).
1025	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Coccotrema pocillarium [129502]	AF274093
			Pyrgillus javanicus [279161]	DQ823103
			Calicium abietinum [262409]	AY452501
			Calicium adspersum [57086]	AY452504
			Calicium montanum [262416]	AY453635
			Tholurna dissimilis [211490]	AY453644
			Cladonia rangiferina [111670]	AY533000
			Lecanora cenisia [273117]	AY532992
			Lecanora concolor [108937]	AY640954
			Strangospora pinicola [286408]	AY640970
				AY640971
			Mycoblastus sanguinarius [312200]	DQ782915
			Melanelixia fuliginosa [180412]	AJ421428		synonym: Melanelia fuliginosa
				AJ421435		synonym: Melanelia fuliginosa
			Melanohalea elegantula [172622]	AJ421437		synonym: Melanelia elegantula
			Melanohalea exasperata [180418]	AJ421438		synonym: Melanelia exasperata
			Melanohalea exasperatula [180417]	AJ421436		synonym: Melanelia exasperatula
			Buellia geophila [205604]	AY773917
			Buellia griseovirens [205605]	AY773910
			Buellia muriformis [196133]	AY773925
			Physconia distorta [114786]	AY773913
			Physconia enteroxantha [114787]	AY773909
			Physconia grisea [114791]	AY773921
			Rinodina capensis [299119]	AY773924
			Rinodina milvina [205640]	AY773922
			Rinodina tunicata [144718]	AY773920
			Porpidia albocaerulescens [168922]	AY532938
				AF356676
			Porpidia albocaerulescens var. polycarpiza [273122]	AY532937
			Protoblastenia rupestris [258902]	AY533008
			Gyalecta jenensis [146295]	AF465450
				AF279391
1065	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas indica [28457]	Z17228		LIT: J. Mol. Biol. 232:446-467 (1993).
1090	N	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Fuligo septica [159720]	AJ584697
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Thelocarpella gordensis [286411]	AY640974
			Acarospora clauzadeana [286396]	AY640946
			Acarospora macrospora subsp. macrospora [286395]	AY640944
			Acarospora schleicheri [88748]	AY640945
			Glypholecia scabra [286398]	AY640951
			Polysporina simplex [286400]	AY640961
			Biatoridium monasteriense [286569]	AY640947
			Calicium glaucellum [262413]	AY453646
			Calicium tricolor [39939]	AY453637
			Lecanora hybocarpa [394998]	DQ782910
			Rhizoplaca chrysoleuca [112062]	AY648104
			Scoliciosporum umbrinum [93123]	AY640967
			Mycoblastus sanguinarius [312200]	DQ782915
			Melanelia disjuncta [180415]	AJ421431
			Melanohalea elegantula [172622]	AJ421437		synonym: Melanelia elegantula
			Melanohalea exasperatula [180417]	AJ421436		synonym: Melanelia exasperatula
			Parmotrema tinctorum [235862]	AY584635
			Xanthoparmelia pulla [172623]	AJ421433		synonym Neofuscelia pulla
			Buellia alboatra [116790]	AY773915
			Buellia geophila [205604]	AY773917
			Diplotomma alboatrum [205613]	AY452500
			Diplotomma epipolium [501307]	AY773916
			Phaeophyscia orbicularis [116805]	AY773926
			Physcia aipolia [50936]	DQ782904
			Immersaria usbekica [273086]	AY532985
			Porpidia carlottiana [273093]	AY532940
			Fuscidea lygaea [286414]	AY640950
			Coenogonium leprieurii [185321]	AF465442
			Gyalecta hypoleuca [185327]	AF465453
			Porina guentheri [146306]	AF279405
			Acarosporina microspora [271836]	AY584643
			Hymenelia lacustris [196135]	AY533006
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Fungi incertae sedis » ...	Coemansia reversa [61392]	AY546689
1094	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Symbiotaphrina buchneri [40220]	DQ248313
			Dermatocarpon luridum [172326]	AY640948
			Dermatocarpon miniatum [172328]	AY584644
			Verrucaria pachyderma [168926]	AF356668
			Acarospora canadensis [286390]	AY640940
			Acarospora cf. dissipata [168908]	AF356656
			Acarospora complanata [168909]	AF356654
			Acarospora hilaris [286392]	AY640942
			Sarcogyne regularis var. regularis [286403]	AY640964
			Calicium adaequatum [262410]	AY452502
			Lecanora cenisia [273117]	AY532992
			Rhizoplaca huashanensis [239500]	AY648105
			Melanelia stygia [112444]	AJ421434
			Amandinea punctata [116786]	AY773918
			Anaptychia runcinata [116789]	AY773919
			Physcia stellaris [116821]	AY773912
			Physcia tenella [116822]	AY773908
			Physconia distorta [114786]	AY773913
			Physconia grisea [114791]	AY773921
			Physconia perisidiosa [114789]	AY773911
			Rinodina atrocinerea [144699]	AY773923
			Rinodina milvina [205640]	AY773922
			Rinodina tunicata [144718]	AF457569
				AY773920
			Trapeliopsis granulosa [129519]	AF279415
			Gyalecta jenensis [146295]	AF465450
				AF279391
			Stictis radiata [38076]	AF356663
			Tremolecia atrata [273074]	AY533007
1921	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Symbiotaphrina buchneri [40220]	DQ248313
			Buellia aethalea [205603]	AY773927
			Buellia alboatra [116790]	AY773928
			Physcia aipolia [50936]	AY773929
			Physconia distorta [114786]	AY773930
			Physconia enteroxantha [114787]	AY773931
				AF457573
			Rinodina atrocinerea [144699]	AY773932
1923	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas indica [28457]	Z17228		LIT: J. Mol. Biol. 232:446-467 (1993).
2069	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Rinodina atrocinerea [144699]	AY773932
2449	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Symbiotaphrina buchneri [40220]	DQ248313
			Amandinea punctata [116786]	AY773934
			Buellia alboatra [116790]	AY773933
			Buellia penichra [205607]	AY773936
			Physconia enteroxantha [114787]	AY773937
			Rinodina capensis [299119]	AY773938
			Rinodina tunicata [144718]	AY773939
2499	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cryphonectria parasitica [5116]	AF068139
2585	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Rhizophydium sp. 136 [60187]	AF404306
2596	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas indica [28457]	Z17228		LIT: J. Mol. Biol. 232:446-467 (1993).
IA1	958	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas callosa [51692]	L43501
	1065	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Stigeoclonium helveticum [55999]	L49157
				Chlamydomonas sp. SAG 66.72 [163103]	L43539
				Dunaliella parva [3048]	L43540
				Haematococcus lacustris [107616]	L49151
	1255	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas callosa [51692]	L43501
				Chlamydomonas frankii [28455]	L43352
				Chlamydomonas komma [28459]	L43502
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Neochloris aquatica [3099]	L49155
	1699	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Podospora anserina [5145]	X14735
	1766	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlorococcum echinozygotum [48000]	L44123
	2449	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Carteria olivieri [52037]	L43500
				Chlamydomonas pseudopertusa [160059]	L43355
				Chlamydomonas sp. SAG 66.72 [163103]	L43539
				Lobochlamys segnis [52035]	L43503		synonym Chlamydomonas pallidostigmatica
				Dunaliella parva [3048]	L43540
				Chlorococcum echinozygotum [48000]	L44123
				Chlorosarcina brevispinosa [163096]	L49150
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Pedinophyceae » ...	Pedinomonas tuberculata [160064]	L43541
		M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Blastocladiomycota » ...	Allomyces macrogynus [28583]	U41288
			cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Rhizophydium sp. 136 [60187]	AF404306
			cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Emericella nidulans [162425]	J01390		synonym Aspergillus nidulans
				Penicillium chrysogenum [5076]	U44726 D13859
				Penicillium marneffei [37727]	AY347307
				Penicillium urticae [29844]	D14567
				Metarhizium anisopliae [5530]	AY884128
				Torrubiella confragosa [40604]	AF487277		synonym Verticillium lecanii
				Hypocrea jecorina [51453]	AF447590
				Podospora anserina [5145]	X14735
				Neurospora crassa [5141]	J01427
				Kluyveromyces dobzhanskii [51656]	AJ229054
				Kluyveromyces lactis [28985]	AY654900
					X51805 AJ229055
				Pichia canadensis [4907]	D31785		was Hansenula wingei
				Saccharomyces cariocus [109211]	AJ229045
				Saccharomyces cerevisiae [4932]	AJ011856		ORF for SCEI
					V00699
					X00149	a.I1
				Saccharomyces douglasii [46617]	X53520
				Saccharomyces paradoxus [27291]	AJ229046
				Saccharomyces servazzii [27293]	AJ430679
				Torulaspora delbrueckii [4950]	AJ229052
				Torulaspora globosa [48254]	AJ229053
				Torulaspora pretoriensis [35629]	AJ229051
				Zygosaccharomyces bisporus [4957]	AJ229056
				Zygosaccharomyces rouxii [4956]	AJ229050
				Agrocybe aegerita [5400]	AF087656
				Suillus luteus [5384]	L47586	a.I1
				Cryptococcus neoformans var. neoformans [40410]	AY560611
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas moewusii [3054]	M90640
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Prototheca wickerhamii [3111]	X68722
		N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Fusarium oxysporum [5507]	AY874423
	2504	M	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Dictyosteliida » ...	Dictyostelium discoideum [44689]	D16466 AB000109
			cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Blastocladiomycota » ...	Allomyces macrogynus [28583]	U41288
			cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Suillus luteus [5384]	L47586	a.I1
				Cryptococcus neoformans var. neoformans [40410]	AY560611
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Scenedesmus obliquus [3088]	X17375
					AF204057
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Prototheca wickerhamii [3111]	X68722
IA3	580	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Agrocybe aegerita [5400]	AF087656
	730	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Stigeoclonium helveticum [55999]	L49157
				Haematococcus lacustris [107616]	L49151
	779	M	cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara vulgaris [55564]	AY267353
	1951	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlorosarcina brevispinosa [163096]	L49150
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ...	Monomastix sp. M722 [141717]	L44124
				Monomastix sp. OKE-1 [141716]	L49154		synonym Monomastix sp. CL-1997
		M	cellular organisms » Eukaryota » Amoebozoa » Centramoebida » Acanthamoebidae » ...	Acanthamoeba castellanii [5755]	U03732
					U12386
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella vulgaris [3077]	AY008338		IP noted by authors in manuscript
		N	cellular organisms » Bacteria » Proteobacteria » Gammaproteobacteria » Legionellales » ...	Coxiella burnetii [777]	EF632073
				Coxiella burnetii CbuG_Q212 [434923]	CP001019
				Coxiella burnetii CbuK_Q154 [434924]	CP001020
				Coxiella burnetii RSA 493 [227377]	AE016960
					AE016828
	2500	M	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ...	Nephroselmis olivacea [31312]	AF110138
	2533	M	cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara vulgaris [55564]	AY267353
	2593	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Carteria lunzensis [160071]	L42986
				Carteria olivieri [52037]	L43500
				Chlamydomonas agloeformis [160058]	L43351
				Chlamydomonas callosa [51692]	L43501
				Chlamydomonas mexicana [28460]	L49148
				Chlamydomonas nivalis [47906]	L42990
				Chlamydomonas peterfii [28462]	L43538
				Chlamydomonas reinhardtii [3055]	FJ423446
					FJ423446
					X01977
				Haematococcus lacustris [107616]	L49151
				Scenedesmus obliquus [3088]	L43360
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyta incertae sedis » ...	Oltmannsiellopsis viridis [51324]	DQ291132
					DQ291132
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ...	Scherffelia dubia [3190]	AF393609
					L44126
				Monomastix sp. M722 [141717]	L44124
				Monomastix sp. OKE-1 [141716]	L49154		synonym Monomastix sp. CL-1997
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella vulgaris [3077]	L43357
					AB001684
				Neochloris aquatica [3099]	L49155
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ...	Trichosarcina mucosa [141643]	AY008341
				Pseudendoclonium akinetum [160070]	AY835431		replaces L44125
					AY835431		replaces L44125
			cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Anthoceros formosae [48387]	AB086179
					AB073981
				Anthoceros punctatus [3234]	AF393576
		M	cellular organisms » Eukaryota » Amoebozoa » Centramoebida » Acanthamoebidae » ...	Acanthamoeba castellanii [5755]	U03732
					U12386
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ...	Nephroselmis olivacea [31312]	AF110138
			cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Mesostigmatophyceae » ...	Mesostigma viride [41882]	AF353999
	2596	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas monadina [47904]	L49149
				Lobochlamys segnis [52035]	L43503		synonym Chlamydomonas pallidostigmatica
				Chlorococcum echinozygotum [48000]	L44123
				Chlorosarcina brevispinosa [163096]	L49150
				Oedogonium cardiacum [55995]	EU677193
					EU677193
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Trebouxia aggregata [160068]	L43542
IB	1915	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Rhizophydium sp. 136 [60187]	AF404306
	1931	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Lobochlamys segnis [52035]	L36830	a.I1	synonym Chlamydomonas pallidostigmatica
		M	cellular organisms » Eukaryota » Amoebozoa » Centramoebida » Acanthamoebidae » ...	Acanthamoeba castellanii [5755]	U12386
					U03732	a.I1
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ...	Nephroselmis olivacea [31312]	AF110138
		N	cellular organisms » Bacteria » Chlamydiae/Verrucomicrobia group » Chlamydiae » Chlamydiae (class) » ...	Simkania negevensis [83561]	U68460	a.I1
	1939	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Trimorphomyces papilionaceus [5221]	X73672	a.I1
	1943	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Rhizophydium sp. 136 [60187]	AF404306
			cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara vulgaris [55564]	AY267353
	2500	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas applanata [35704]	L06107		synonym Chlamydomonas humicola
		M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Rhizophydium sp. 136 [60187]	AF404306
			cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Hebeloma crustuliniforme icg 1 [91698]	AF174472
					AF174468
					AF174466
					AF174460
				Hebeloma crustuliniforme icg 2 [91699]	AF174462
					AF174463
					AF174471
					AF174469
					AF174470
				Hebeloma crustuliniforme icg 3 [91700]	AF174473
					AF174475
					AF174474
					AF174461
					AF174476
				Hebeloma crustuliniforme icg 4 [92391]	AF174464
					AF174465
					AF174467
	2571	M	cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara vulgaris [55564]	AY267353
IB1	1943	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi/Metazoa incertae sedis » Ichthyosporea » ...	Amoebidium parasiticum [4881]	AF538042
	1949	N	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Didymium iridis [5793]	X60210
	2500	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi/Metazoa incertae sedis » Ichthyosporea » ...	Amoebidium parasiticum [4881]	AF538042
	2584	M	cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara vulgaris [55564]	AY267353
IB2	796	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Rhizophydium sp. 136 [60187]	AF404306
	1065	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Spizellomyces punctatus [109760]	AF404303
	1066	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Agrocybe aegerita [5400]	AF087656
	1773	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi/Metazoa incertae sedis » Ichthyosporea » ...	Amoebidium parasiticum [4881]	AF538042
	1974	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Suillus luteus [5384]	L47586	a.I1
	2067	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Rhizophydium sp. 136 [60187]	AF404306
	2256	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Rhizophydium sp. 136 [60187]	AF404306
	2584	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi/Metazoa incertae sedis » Ichthyosporea » ...	Amoebidium parasiticum [4881]	AF538042
IB4	TBD	N	cellular organisms » Bacteria » Thermotogae » Thermotogae (class) » Thermotogales » ...	Thermotoga neapolitana DSM 4359 [309803]	CP000916
	1917	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlorosarcina brevispinosa [163096]	L49150
		M	cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chaetosphaeridium globosum [96477]	AF494279
		N	cellular organisms » Bacteria » Proteobacteria » Gammaproteobacteria » Legionellales » ...	Coxiella burnetii [777]	EF632073
				Coxiella burnetii CbuG_Q212 [434923]	CP001019
				Coxiella burnetii CbuK_Q154 [434924]	CP001020
				Coxiella burnetii RSA 331 [360115]	CP000890
				Coxiella burnetii RSA 493 [227377]	AE016828
					AE016960
	1923	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Stigeoclonium helveticum [55999]	L49157
				Carteria lunzensis [160071]	L42986
				Chlamydomonas monadina [47904]	L49149
				Chlamydomonas mutabilis [47905]	L42859
				Lobochlamys segnis [52035]	L43503		synonym Chlamydomonas pallidostigmatica
				Chlorogonium elongatum [52029]	L42860
				Chlorococcum echinozygotum [48000]	L44123
				Scenedesmus obliquus [3088]	L43360
				Ankistrodesmus stipitatus [3109]	L42984
		M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Russulaceae sp. Type T [103200]	AF176829
				Suillus luteus [5384]	L47586	a.I1
			cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara vulgaris [55564]	AY267353
	1931	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas callosa [51692]	L43501
				Chlamydomonas frankii [28455]	L43352
				Chlamydomonas geitleri [28456]	L43353
				Chlamydomonas komma [28459]	L43502
				Chlamydomonas mexicana [28460]	L49148
				Lobochlamys segnis [52035]	L43503		synonym Chlamydomonas pallidostigmatica
				Dunaliella parva [3048]	L43540
				Haematococcus lacustris [107616]	L49151
				Chlorosarcina brevispinosa [163096]	L49150
				Oedogonium cardiacum [55995]	EU677193
					EU677193
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyta incertae sedis » ...	Oltmannsiellopsis viridis [51324]	DQ291132
					DQ291132
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Pedinophyceae » ...	Pedinomonas tuberculata [160064]	L43541
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ...	Monomastix sp. M722 [141717]	L44124
				Monomastix sp. OKE-1 [141716]	L49154		synonym Monomastix sp. CL-1997
				Pterosperma cristatum [38836]	L43359
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Neochloris aquatica [3099]	L49155
		M	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ...	Monomastix sp. M722 [141717]	AY008340		IP noted by authors in manuscript
				Monomastix sp. OKE-1 [141716]	AY008339		IP noted by authors in manuscript
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella vulgaris [3077]	AY008337		IP noted by authors in manuscript
			cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Mesostigmatophyceae » ...	Mesostigma viride [41882]	AF353999
			cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara vulgaris [55564]	AY267353
		N	cellular organisms » Bacteria » Thermotogae » Thermotogae (class) » Thermotogales » ...	Thermotoga naphthophila [93930]	AJ872268
					AJ556785
				Thermotoga neapolitana [2337]	AJ556788
					AJ556784
					AJ556787
					AJ872266
					AJ872267
				Thermotoga petrophila [93929]	AJ556786
					AJ872269
				Thermotoga sp. FjSS3-B.1 [228343]	AJ556789
				Thermotoga sp. RQ7 [126738]	AJ556790
					AJ872270
				Thermotoga sp. SG1 [126739]	AJ556792
					AJ872271
				Thermotoga sp. SL7 [228344]	AJ556791
				Thermotoga subterranea [39100]	AJ556793
	2262	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas callosa [51692]	L43501
				Chlamydomonas frankii [28455]	L43352
				Chlamydomonas monadina [47904]	L49149
				Chlamydomonas sp. SAG 66.72 [163103]	L43539
Lobochlamys segnis [52035]				L43503		synonym Chlamydomonas pallidostigmatica
cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...			Trebouxia aggregata [160068]	L43542
M		cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara vulgaris [55564]	AY267353
2500	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Stigeoclonium helveticum [55999]	L49157
			Chlamydomonas applanata [35704]	L42989		synonym Chlamydomonas humicola
			Chlamydomonas frankii [28455]	L43352
			Chlamydomonas monadina [47904]	L49149
			Chlamydomonas starrii [28463]	L43504
			Chlamydomonas zebra [28464]	L43356
			Dunaliella parva [3048]	L43540
			Ankistrodesmus stipitatus [3109]	L42984
		cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyta incertae sedis » ...	Oltmannsiellopsis viridis [51324]	DQ291132
				DQ291132
		cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Pedinophyceae » ...	Pedinomonas tuberculata [160064]	L43541
		cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ...	Monomastix sp. OKE-1 [141716]	L49154		synonym Monomastix sp. CL-1997
		cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Trebouxia aggregata [160068]	L43542
			Neochloris aquatica [3099]	L49155
		cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ...	Trichosarcina mucosa [141643]	AY008341
		cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara corallina [43696]	AF393579
			Chara sp. CL-2002-1 [184708]	AF393584
			Chara sp. CL-2002-2 [184707]	AF393586
			Chara vulgaris [55564]	DQ229107
				DQ229107
			Nitella sp. CL-2002 [184709]	AF393603
	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Agrocybe aegerita [5400]	AF087656
			Suillus luteus [5384]	L47586	a.I1
		cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyta incertae sedis » ...	Oltmannsiellopsis viridis [51324]	DQ365900
		cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ...	Pseudendoclonium akinetum [160070]	AY359242
		cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara vulgaris [55564]	AY267353
IC	1898	N	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Fuligo septica [159720]	AJ584697
	1911	N	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Fuligo septica [159720]	AJ584697
IC1	798	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Spizellomyces punctatus [109760]	AY546692
			cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Protomyces inouyei [27332]	AY548294
				Capronia pilosella [45095]	DQ823099
					AF279378
				Exophiala dermatitidis [5970]	DQ823100
				Peltula umbilicata [169193]	AF356689
				Rhizoscyphus ericae [5183]	U06869		synonym Hymenoscyphus ericae
				Fabrella tsugae [66499]	AF356694
				Botryotinia porri [87229]	AJ226077		anamorph: Botrytis porri
				Dumontinia ulmariae [87231]	AJ226079
				Encoelia fascicularis [54680]	AJ226080
				Grovesinia pyramidalis [54682]	AJ226081
				Myriosclerotinia caricis-ampullaceae [87227]	AJ226082
				Myriosclerotinia ciborium [87232]	AJ226084
					AJ226083
				Myriosclerotinia curreyana [87228]	AJ226086
					AJ226085
				Myriosclerotinia luzulae [87233]	AJ226087
				Sclerotinia sclerotiorum [5180]	AJ226089	a.I1	str. 1837.P
					AJ226088		str. 926.P
					AY187067
					AY187079
				Sclerotinia tetraspora [87234]	AJ226090		str. 642.1
					AJ226091		str. 1993.1
					AJ226092		str. 2006.1
				Botrytis tulipae [87230]	AJ226078
				Cryptodiaporthe corni [148327]	AF408343
				Ditopella ditopa [187255]	AF408360
				Clavicorona taxophila [71850]	AF115333
				Hydnopolyporus fimbriatus [378272]	DQ457673
				Henningsomyces puber [269163]	AY571009
				Henningsomyces sp. C58569 [269176]	AY571011
				Dictyopanus pusillus [135782]	AY014291
				Hemimycena gracilis [378190]	DQ457671
				Megacollybia platyphylla [182000]	AY702016
					AY635778
				Mycena aff. pura PBM 2665 [378278]	DQ457688
					DQ457689
				Mycena amabilissima [378279]	DQ457691
				Mycena amicta [380012]	DQ457692
				Mycena aurantiidisca [154518]	DQ470811
				Mycena capillaripes [230804]	AY207247
				Mycena crocata [220801]	AY207241
				Mycena galericulata [71905]	AY207251
					AY647216
				Mycena galopus [41248]	AY207250
				Mycena leptocephala [230808]	AY207253
				Mycena niveipes [230800]	AY207242
				Mycena plumbea [378280]	DQ470813
				Mycena pura [153505]	AY207244
				Mycena renati [230811]	AY207256
				Mycena tintinnabulum [230813]	AY207258
				Panellus stypticus [5636]	AY014292
					AY398745
				Fibulorhizoctonia sp. LA082103L [282313]	AY635779
				Naohidea sebacea [112072]	AF522176
				Entyloma arnoseridis [189583]	DQ645528
				Entyloma calendulae [84748]	DQ663687
				Entyloma holwayi [63376]	AY745721
				Exobasidium gracile [190086]	DQ663699
				Cintractia axicola [63370]	DQ631906
				Cintractia sorghi-vulgaris [293803]	AY745726
			cellular organisms » Eukaryota » Rhodophyta » Florideophyceae » Hildenbrandiales » ...	Hildenbrandia rubra [31481]	AF419136
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Halosarcinochlamys cherokeensis [327047]	DQ015760		misannotated; synonym: chlamydomonad sp. SPMO-BS
Dunaliella sp. SPMO 980625-1E [327078]	DQ015750			misannotated; synonym: Dunaliella sp. SPMO
Dunaliella viridis [140095]	DQ015754			misannotated
Dictyochloris fragrans [179863]	AY206712
Dictyochloris pulchra [179864]	AY206713
1921	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pneumocystis carinii [4754]	L13614	a.I1
				M86760	a.I1
				AF236872
				L13615	a.I1
			Symbiotaphrina kochii [40221]	DQ248314
			Cordyceps bassiana [176275]	AB044638		GenBank anamorph Beauveria bassiana
			Cordyceps kanzashiana [94210]	AB044639
			Cordyceps prolifica [94209]	AB044640
			Cordyceps sp. 97009 [94216]	AB044641
			Gaeumannomyces graminis var. avenae [36778]	U17161
		cellular organisms » Eukaryota » Heterolobosea » Schizopyrenida » Vahlkampfiidae » ...	Naegleria sp. [37103]	AJ001316		IP from LIT: Nucleic Acids Res. 26(2):456-461 (1998).
1925	N	cellular organisms » Eukaryota » Alveolata » Ciliophora » Intramacronucleata » ...	Tetrahymena cosmopolitanis [5921]	X03107	a.I1
			Tetrahymena hyperangularis [5899]	X03106	a.I1
			Tetrahymena malaccensis [5901]	X03105	a.I1
			Tetrahymena pigmentosa [5907]	J01210	a.I1
			Tetrahymena silvana [5918]			Engberg et al. (1988) Molecular Genetics (Life Sci. Adv.)
			Tetrahymena sonneborni [5910]	X03108
			Tetrahymena thermophila [5911]	V01416 J01235	b.I1
			Tetrahymena thermophila (SCHEM) [600401]		s.I1
		cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Physarum polycephalum [5791]	L03183	a.I1
1949	N	cellular organisms » Eukaryota » Heterolobosea » Schizopyrenida » Vahlkampfiidae » ...	Naegleria sp. [37103]	AJ001314		IP from LIT: Nucleic Acids Res. 26(2):456-461 (1998).
2449	N	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Didymium iridis [5793]	X60210
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cordyceps kanzashiana [94210]	AB044639
			Cordyceps prolifica [94209]	AB044640
			Cordyceps sp. 97009 [94216]	AB044641
			Gaeumannomyces graminis var. avenae [36778]	U17161
			Gaeumannomyces graminis var. tritici [36779]	U17160
			Arxula adeninivorans [37620]	Z50840	a.I1
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Fungi incertae sedis » ...	Coemansia reversa [61392]	AY546689
2500	N	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Fuligo septica [159720]	AJ584697
2563	N	cellular organisms » Eukaryota » Heterolobosea » Schizopyrenida » Vahlkampfiidae » ...	Naegleria morganensis [159475]	AJ311175
			Naegleria sp. [37103]	AJ001315		IP from LIT: Nucleic Acids Res. 26(2):456-461 (1998).
2584	N	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Fuligo septica [159720]	AJ584697
IC2	1685	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Suillus luteus [5384]	L47586	a.I1
	1931	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi/Metazoa incertae sedis » Ichthyosporea » ...	Amoebidium parasiticum [4881]	AF538042
	1949	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Suillus grisellus [48572]	L47591
				Suillus luteus [5384]	L47592
					L47586	a.I1
					L47593
				Suillus pungens [48582]	L47588
				Suillus viscidus [85998]	L47589
					L47590
IC3	1949	N	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Fuligo septica [159720]	AJ584697
				Physarum flavicomum [35220]	X78959
				Physarum polycephalum [5791]	X60211
					V01159
	2449	N	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Fuligo septica [159720]	AJ584697
				Physarum flavicomum [35220]	X78959
				Physarum polycephalum [5791]	V01159
					X60211
ID	779	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Agrocybe aegerita [5400]	AF087656
	2585	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Agrocybe aegerita [5400]	AF087656
IE	958	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Exobasidium gracile [190086]	DQ663699		misannotated
	1923	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Candida albicans [5476]	X74272
				Candida dubliniensis [42374]	Z70663
					AF405231
	1926	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Spizellomyces punctatus [109760]	AY546692
			cellular organisms » Eukaryota » Heterolobosea » Schizopyrenida » Vahlkampfiidae » ...	Naegleria sp. [37103]	AJ271406
				Naegleria sp. NG874 [159476]	AJ311176
			cellular organisms » Eukaryota » Rhizaria » Foraminifera » Rotaliida » ...	Rotaliella elatiana [35210]	X78521
			cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » Coscinodiscophyceae » ...	Skeletonema pseudocostatum [41457]	Y11512
	2066	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Symbiotaphrina buchneri [40220]	DQ248313
				Buellia alboatra [116790]	AY773928
				Physcia aipolia [50936]	AY773929
				Cordyceps kanzashiana [94210]	AB044639
				Cordyceps prolifica [94209]	AB044640
				Cordyceps sp. 97009 [94216]	AB044641
	2563	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Buellia geophila [205604]	AY787754
				Dimelaena oreina [116793]	AY773940
				Rinodina capensis [299119]	AY773938
				Rinodina tunicata [144718]	AY773939
				Cordyceps brongniartii [118266]			LIT: Curr. Genet. 27(1):38-45 (1994).
				Cordyceps kanzashiana [94210]	AB044639
				Cordyceps prolifica [94209]	AB044640
				Cordyceps sp. 97009 [94216]	AB044641
				Gaeumannomyces graminis var. tritici [36779]	U17160
IIB	575	M	cellular organisms » Eukaryota » stramenopiles » PX clade » Phaeophyceae » ...	Pylaiella littoralis [2885]	Z48620	a.I2
					AJ277126
	787	M	cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Marchantia polymorpha [3197]	M68929
	1787	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Metazoa » Placozoa » ...	Placozoan sp. BZ10101 [401703]	DQ889456
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Pedinophyceae » ...	Pedinomonas minor [3159]	AF116775
			cellular organisms » Eukaryota » stramenopiles » PX clade » Phaeophyceae » ...	Pylaiella littoralis [2885]	AJ277126
					Z48620	a.I2
	2059	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Blastocladiomycota » ...	Allomyces macrogynus [28583]	U41288
			cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Rhizophydium sp. 136 [60187]	AF404306
			cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Agrocybe aegerita [5400]	AF087656	a.I2
				Suillus luteus [5384]	L47586
	2449	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi/Metazoa incertae sedis » Ichthyosporea » ...	Amoebidium parasiticum [4881]	AF538042
	2451	M	cellular organisms » Eukaryota » stramenopiles » PX clade » Phaeophyceae » ...	Pylaiella littoralis [2885]	AJ277126
					Z48620	a.I2
	2455	M	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Scenedesmus obliquus [3088]	AF204057
					X17375	a.I2
	2509	M	cellular organisms » Eukaryota » Rhodophyta » Bangiophyceae » Bangiales » ...	Porphyra purpurea [2787]	AF114794
			cellular organisms » Eukaryota » stramenopiles » PX clade » Phaeophyceae » ...	Pylaiella littoralis [2885]	Z48620	a.I2
					AJ277126
	2584	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Candida stellata [45594]	AY445918
	2586	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Metazoa » Placozoa » ...	Trichoplax adhaerens [10228]	DQ112541
				Placozoan sp. BZ10101 [401703]	DQ889456
				Placozoan sp. BZ2423 [401705]	DQ889458
	2610	M	cellular organisms » Eukaryota » Rhodophyta » Bangiophyceae » Bangiales » ...	Porphyra purpurea [2787]	AF114794
U	323	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. M1T [278051]	AB178788		Archaeal
				Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
				Thermoproteus sp. IC-033 [70772]	AB178781		Archaeal
				Thermoproteus sp. IC-061 [70773]	AB178789		Archaeal
				Thermoproteus sp. IC-070 [278053]	AB178791		Archaeal
	471	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Caldivirga maquilingensis [76887]	AB178785		Archaeal
				Pyrobaculum sp. M1T [278051]	AB178788		Archaeal
	674	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Echinoplaca strigulacea [394997]	DQ782905		spliceosomal
	677	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Letrouitia domingensis [157776]	AY584648		spliceosomal
	678	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Calicium montanum [262416]	AY453635		spliceosomal
				Calicium quercinum [262418]	AY453636		spliceosomal
				Cyphelium notarisii [262920]	AY453640		spliceosomal
				Cyphelium tigillare [140094]	AY453642		spliceosomal
					AY453641		spliceosomal
				Lecanora hybocarpa [394998]	DQ782910		spliceosomal
				Mycoblastus sanguinarius [312200]	DQ782915		spliceosomal
				Flavoparmelia caperata [172615]	AY584639		spliceosomal
				Melanelia disjuncta [180415]	AJ421431		spliceosomal
				Melanelixia fuliginosa [180412]	AJ421428		spliceosomal; synonym: Melanelia fuliginosa
				Menegazzia terebrata [180482]	AY584637		spliceosomal
				Parmotrema tinctorum [235862]	AY584635		spliceosomal
				Punctelia hypoleucites [271830]	AY584646		spliceosomal
				Punctelia rudecta [271831]	AY584636		spliceosomal
				Xanthoparmelia pulla [172623]	AJ421433		synonym Neofuscelia pulla; spliceosomal
				Physcia aipolia [50936]	AY773914		spliceosomal
				Lobaria pulmonaria [86794]	AF401965		spliceosomal
					AF183934		spliceosomal
				Lobaria quercizans [146301]	AF279397		spliceosomal
				Placynthiella icmalea [129542]	AY212846		spliceosomal
				Trapeliopsis percrenata [133179]	AF279302		spliceosomal
				Gyalecta jenensis [146295]	AF465450		spliceosomal
					AF279391		spliceosomal
				Porina guentheri [146306]	AF279405		spliceosomal
				Hymenelia lacustris [196135]	AY533006		spliceosomal
					AY640953		spliceosomal
				Tremolecia atrata [273074]	AY533007		spliceosomal
				Chaetosphaeria sp. 17 [146320]	AF279416		spliceosomal
					AF279417		spliceosomal
				Chaetosphaeria sp. 7 [146321]	AF279418		spliceosomal
				Chaetosphaeria sp. 8 [146322]	AF279419		spliceosomal
				Melanochaeta sp. 2 [146323]	AF279420		spliceosomal
				Melanochaeta sp. 8 [146324]	AF279421		spliceosomal
				Linocarpon appendiculatum [252208]	AY346291		spliceosomal
	681	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Stictis radiata [38076]	AF356663		spliceosomal
	704	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cyphelium tigillare [140094]	AY453641		spliceosomal
					AY453642		spliceosomal
				Hilberina caudata [260657]	AY436406		spliceosomal
	711	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Gyalecta jenensis [146295]	AF465450		spliceosomal
					AF279391		spliceosomal
				Gyalecta thelotremella [185328]	AF465455		spliceosomal
	767	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pertusaria oculata [267812]	AY568005		spliceosomal
	775	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Flavoparmelia caperata [172615]	AY584639		spliceosomal
				Dibaeis baeomyces [83478]	AF279385		spliceosomal
				Pertusaria pupillaris [267815]	AY568007		spliceosomal
	776	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Capronia pilosella [45095]	AF279378		spliceosomal
				Lecanora hybocarpa [394998]	DQ782910		spliceosomal
				Bacidia rosella [93112]	AY300829		spliceosomal
				Petractis luetkemuelleri [185330]	AF465454		spliceosomal
				Pertusaria coccodes [133176]	AF279295		spliceosomal
				Pertusaria hymenea [133177]	AF279297		spliceosomal
				Pertusaria kalelae [133180]	AF279298		spliceosomal
	777	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Calicium adaequatum [262410]	AY452503		spliceosomal
					AY452502		spliceosomal
				Calicium quercinum [262418]	AY453636		spliceosomal
Anaptychia runcinata [116789]				AY773919		spliceosomal; unannotated
Rinodina tunicata [144718]				AF457568		spliceosomal
				AY773920		spliceosomal
Placynthiella icmalea [129542]				AY212846		spliceosomal
780	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pertusaria tejocotensis [133185]	AF279301		spliceosomal
782	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Caloplaca flavorubescens [140092]	AY300831		spliceosomal
783	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Gyalecta jenensis [146295]	AF465450		spliceosomal
			Gyalecta thelotremella [185328]	AF465455		spliceosomal
			Sagaaromyces abonnis [213797]	AF539469		spliceosomal; synonym Halosarpheia abonnis
			Sagaaromyces ratnagiriensis [213798]	AF539470		spliceosomal; synonym Halosarpheia ratnagiriensis
			Annulatascus triseptatus [246472]	AY346257		spliceosomal
784	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Melanelixia glabra [180411]	AJ421427		spliceosomal; synonym: Melanelia glabra
			Parmotrema tinctorum [235862]	AY584635		spliceosomal
			Bellemerea subsorediza [273080]	AY532983		spliceosomal
			Phaeographina chrysocarpa [185318]	AF465448		spliceosomal
			Tremolecia atrata [273074]	AY533007		spliceosomal
			Pertusaria lactescens [267811]	AY568004		spliceosomal
			Melanochaeta sp. 8 [146324]	AF279421		spliceosomal
786	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pertusaria kalelae [133180]	AF279298		spliceosomal
787	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Dibaeis baeomyces [83478]	AF279385		spliceosomal
801	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Megalospora tuberculosa [271826]	AY584650		spliceosomal
824	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Stictis radiata [38076]	AF356663		spliceosomal
829	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Placynthiella icmalea [129542]	AY212846		spliceosomal
830	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Coenogonium leprieurii [185321]	AF465442		spliceosomal
858	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Trapeliopsis granulosa [129519]	AF279415		spliceosomal
			Trapeliopsis percrenata [133179]	AF279302		spliceosomal
898	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Calicium abietinum [262409]	AY452501		spliceosomal
			Calicium tricolor [39939]	AY453637		spliceosomal
978	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Gyalecta herrei [185326]	AF465449		spliceosomal
			Gyalecta jenensis [146295]	AF465450		spliceosomal
				AF279391		spliceosomal
1024	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Ocellularia alborosella [185314]	AF465452		spliceosomal
1054	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Physcia aipolia [50936]	AY773914		spliceosomal
			Rinodina tunicata [144718]	AY773920		spliceosomal; misannotated
				AF457569		spliceosomal
			Coenogonium leprieurii [185321]	AF465442		spliceosomal
			Chroodiscus coccineus [185312]	AF465441		spliceosomal
1085	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Aeropyrum pernix [56636]	AP000062		Archaeal; replaces AB008745; strain:K1
				AB078022		Archaeal
				AB019553		Archaeal; strain:TB1
				AB078021		Archaeal
				AB078020		Archaeal
				AB078019		Archaeal
				AB078018		Archaeal
				AB078017		Archaeal
				AB019554		Archaeal; strain:TB7
1091	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Coenogonium luteum [146297]	AF279387		spliceosomal; synonym Dimerella lutea
1092	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Calicium abietinum [262409]	AY452501		spliceosomal
			Calicium denigratum [262412]	AY452505		spliceosomal
			Physcia aipolia [50936]	AY773914		spliceosomal
1093	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Lopezaria versicolor [271828]	AY584651		spliceosomal
			Ocellularia alborosella [185314]	AF465452		spliceosomal
1098	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Bacidia schweinitzii [161808]	DQ782911		spliceosomal
			Coenogonium leprieurii [185321]	AF465442		spliceosomal
1100	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pertusaria oculata [267812]	AY568005		spliceosomal
1102	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Lecanactis abietina [40113]	AY548812		spliceosomal
			Roccella boergesenii [279123]	AY548814		spliceosomal
1699	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. M1T [278051]	AB178788		Archaeal
			Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
			Thermoproteus sp. IC-033 [70772]	AB178781		Archaeal
			Thermoproteus sp. IC-070 [278053]	AB178791		Archaeal
1809	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum organotrophum [2278]			Archaeal; LIT: Gene 121(1):103-110 (1992).
			Thermoproteus neutrophilus [70771]	AB178792		Archaeal
			Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
			Thermoproteus sp. IC-033 [70772]	AB178781		Archaeal
			Thermoproteus sp. IC-070 [278053]	AB178791		Archaeal
			Vulcanisaeta distributa [164451]	AB178784		Archaeal
1849	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cordyceps prolifica [94209]	AB044640		spliceosomal
1903	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Physcia aipolia [50936]	AY773929		spliceosomal
			Physconia enteroxantha [114787]	AF457573		spliceosomal
				AY773931		spliceosomal
1923	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Byssoporia terrestris [80630]	AD001572
1927	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Aeropyrum pernix [56636]	AB019554		Archaeal; strain:TB7
				AB078021		Archaeal
				AB078020		Archaeal
				AB078019		Archaeal
				AP000062		Archaeal; replaces AB008745; strain:K1
			Staphylothermus marinus [2280]	M86623		Archaeal
				M38363		Archaeal
		cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. M0H [278049]	AB178786		Archaeal
			Vulcanisaeta distributa [164451]	AB178783		Archaeal
1929	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Buellia capitis-regum [144685]	AF457572		spliceosomal
			Physcia aipolia [50936]	AY773929		spliceosomal; unannotated
1952	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Desulfurococcus mobilis [2274]	X03263		Archaeal
		cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. 14b [278050]	AB178787		Archaeal
			Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
			Thermoproteus sp. IC-061 [70773]	AB178789		Archaeal
1974	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Byssoporia terrestris [80630]	AD001572
2076	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Buellia muriformis [196133]	AF457571		spliceosomal
2409	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. M0H [278049]	AB178786		Archaeal
			Pyrobaculum sp. M1T [278051]	AB178788		Archaeal
			Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
			Thermoproteus sp. IC-033 [70772]	AB178781		Archaeal
			Thermoproteus sp. IC-070 [278053]	AB178791		Archaeal
2445	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Hymenelia lacustris [196135]	AF457570		spliceosomal; synonym: Ionaspis lacustris
2534	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Vulcanisaeta distributa [164451]	AB178784		Archaeal
2552	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum organotrophum [2278]			Archaeal; LIT: Gene 121(1):103-110 (1992).
2601	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Staphylothermus marinus [2280]	M38363		Archaeal
				M86623		Archaeal