Comparative RNA Web Site and Project The Gutell Lab

Table 2B: Number of rRNA Introns, Intron Position, and Phylogenetic Group for Intron Type Unknown

Structure File Format:PS  PDF  BPSEQ 

EX	RC	IP	L	Phylogeny	Organism [TaxID]	Accession	Structure	Comment
23S	U	323	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. M1T [278051]	AB178788		Archaeal
					Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
					Thermoproteus sp. IC-033 [70772]	AB178781		Archaeal
					Thermoproteus sp. IC-061 [70773]	AB178789		Archaeal
					Thermoproteus sp. IC-070 [278053]	AB178791		Archaeal
		471	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Caldivirga maquilingensis [76887]	AB178785		Archaeal
					Pyrobaculum sp. M1T [278051]	AB178788		Archaeal
		674	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Echinoplaca strigulacea [394997]	DQ782905		spliceosomal
		677	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Letrouitia domingensis [157776]	AY584648		spliceosomal
		678	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Calicium montanum [262416]	AY453635		spliceosomal
					Calicium quercinum [262418]	AY453636		spliceosomal
					Cyphelium notarisii [262920]	AY453640		spliceosomal
					Cyphelium tigillare [140094]	AY453642		spliceosomal
						AY453641		spliceosomal
					Lecanora hybocarpa [394998]	DQ782910		spliceosomal
					Mycoblastus sanguinarius [312200]	DQ782915		spliceosomal
					Flavoparmelia caperata [172615]	AY584639		spliceosomal
					Melanelia disjuncta [180415]	AJ421431		spliceosomal
					Melanelixia fuliginosa [180412]	AJ421428		spliceosomal; synonym: Melanelia fuliginosa
					Menegazzia terebrata [180482]	AY584637		spliceosomal
					Parmotrema tinctorum [235862]	AY584635		spliceosomal
					Punctelia hypoleucites [271830]	AY584646		spliceosomal
					Punctelia rudecta [271831]	AY584636		spliceosomal
					Xanthoparmelia pulla [172623]	AJ421433		synonym Neofuscelia pulla; spliceosomal
					Physcia aipolia [50936]	AY773914		spliceosomal
					Lobaria pulmonaria [86794]	AF183934		spliceosomal
						AF401965		spliceosomal
					Lobaria quercizans [146301]	AF279397		spliceosomal
					Placynthiella icmalea [129542]	AY212846		spliceosomal
					Trapeliopsis percrenata [133179]	AF279302		spliceosomal
					Gyalecta jenensis [146295]	AF465450		spliceosomal
						AF279391		spliceosomal
					Porina guentheri [146306]	AF279405		spliceosomal
					Hymenelia lacustris [196135]	AY533006		spliceosomal
						AY640953		spliceosomal
					Tremolecia atrata [273074]	AY533007		spliceosomal
					Chaetosphaeria sp. 17 [146320]	AF279417		spliceosomal
						AF279416		spliceosomal
					Chaetosphaeria sp. 7 [146321]	AF279418		spliceosomal
					Chaetosphaeria sp. 8 [146322]	AF279419		spliceosomal
					Melanochaeta sp. 2 [146323]	AF279420		spliceosomal
					Melanochaeta sp. 8 [146324]	AF279421		spliceosomal
					Linocarpon appendiculatum [252208]	AY346291		spliceosomal
		681	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Stictis radiata [38076]	AF356663		spliceosomal
		704	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cyphelium tigillare [140094]	AY453641		spliceosomal
						AY453642		spliceosomal
					Hilberina caudata [260657]	AY436406		spliceosomal
		711	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Gyalecta jenensis [146295]	AF279391		spliceosomal
						AF465450		spliceosomal
					Gyalecta thelotremella [185328]	AF465455		spliceosomal
		767	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pertusaria oculata [267812]	AY568005		spliceosomal
		775	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Flavoparmelia caperata [172615]	AY584639		spliceosomal
					Dibaeis baeomyces [83478]	AF279385		spliceosomal
					Pertusaria pupillaris [267815]	AY568007		spliceosomal
		776	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Capronia pilosella [45095]	AF279378		spliceosomal
					Lecanora hybocarpa [394998]	DQ782910		spliceosomal
					Bacidia rosella [93112]	AY300829		spliceosomal
					Petractis luetkemuelleri [185330]	AF465454		spliceosomal
					Pertusaria coccodes [133176]	AF279295		spliceosomal
					Pertusaria hymenea [133177]	AF279297		spliceosomal
					Pertusaria kalelae [133180]	AF279298		spliceosomal
		777	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Calicium adaequatum [262410]	AY452502		spliceosomal
						AY452503		spliceosomal
					Calicium quercinum [262418]	AY453636		spliceosomal
Anaptychia runcinata [116789]	AY773919					spliceosomal; unannotated
Rinodina tunicata [144718]	AY773920					spliceosomal
	AF457568					spliceosomal
Placynthiella icmalea [129542]	AY212846					spliceosomal
780	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pertusaria tejocotensis [133185]	AF279301		spliceosomal
782	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Caloplaca flavorubescens [140092]	AY300831		spliceosomal
783	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Gyalecta jenensis [146295]	AF465450		spliceosomal
			Gyalecta thelotremella [185328]	AF465455		spliceosomal
			Sagaaromyces abonnis [213797]	AF539469		spliceosomal; synonym Halosarpheia abonnis
			Sagaaromyces ratnagiriensis [213798]	AF539470		spliceosomal; synonym Halosarpheia ratnagiriensis
			Annulatascus triseptatus [246472]	AY346257		spliceosomal
784	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Melanelixia glabra [180411]	AJ421427		spliceosomal; synonym: Melanelia glabra
			Parmotrema tinctorum [235862]	AY584635		spliceosomal
			Bellemerea subsorediza [273080]	AY532983		spliceosomal
			Phaeographina chrysocarpa [185318]	AF465448		spliceosomal
			Tremolecia atrata [273074]	AY533007		spliceosomal
			Pertusaria lactescens [267811]	AY568004		spliceosomal
			Melanochaeta sp. 8 [146324]	AF279421		spliceosomal
786	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pertusaria kalelae [133180]	AF279298		spliceosomal
787	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Dibaeis baeomyces [83478]	AF279385		spliceosomal
801	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Megalospora tuberculosa [271826]	AY584650		spliceosomal
824	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Stictis radiata [38076]	AF356663		spliceosomal
829	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Placynthiella icmalea [129542]	AY212846		spliceosomal
830	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Coenogonium leprieurii [185321]	AF465442		spliceosomal
858	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Trapeliopsis granulosa [129519]	AF279415		spliceosomal
			Trapeliopsis percrenata [133179]	AF279302		spliceosomal
898	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Calicium abietinum [262409]	AY452501		spliceosomal
			Calicium tricolor [39939]	AY453637		spliceosomal
978	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Gyalecta herrei [185326]	AF465449		spliceosomal
			Gyalecta jenensis [146295]	AF465450		spliceosomal
				AF279391		spliceosomal
1024	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Ocellularia alborosella [185314]	AF465452		spliceosomal
1054	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Physcia aipolia [50936]	AY773914		spliceosomal
			Rinodina tunicata [144718]	AY773920		spliceosomal; misannotated
				AF457569		spliceosomal
			Coenogonium leprieurii [185321]	AF465442		spliceosomal
			Chroodiscus coccineus [185312]	AF465441		spliceosomal
1085	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Aeropyrum pernix [56636]	AB078019		Archaeal
				AB019554		Archaeal; strain:TB7
				AB078017		Archaeal
				AB078018		Archaeal
				AB078020		Archaeal
				AP000062		Archaeal; replaces AB008745; strain:K1
				AB078022		Archaeal
				AB019553		Archaeal; strain:TB1
				AB078021		Archaeal
1091	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Coenogonium luteum [146297]	AF279387		spliceosomal; synonym Dimerella lutea
1092	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Calicium abietinum [262409]	AY452501		spliceosomal
			Calicium denigratum [262412]	AY452505		spliceosomal
			Physcia aipolia [50936]	AY773914		spliceosomal
1093	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Lopezaria versicolor [271828]	AY584651		spliceosomal
			Ocellularia alborosella [185314]	AF465452		spliceosomal
1098	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Bacidia schweinitzii [161808]	DQ782911		spliceosomal
			Coenogonium leprieurii [185321]	AF465442		spliceosomal
1100	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pertusaria oculata [267812]	AY568005		spliceosomal
1102	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Lecanactis abietina [40113]	AY548812		spliceosomal
			Roccella boergesenii [279123]	AY548814		spliceosomal
1699	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. M1T [278051]	AB178788		Archaeal
			Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
			Thermoproteus sp. IC-033 [70772]	AB178781		Archaeal
			Thermoproteus sp. IC-070 [278053]	AB178791		Archaeal
1809	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum organotrophum [2278]			Archaeal; LIT: Gene 121(1):103-110 (1992).
			Thermoproteus neutrophilus [70771]	AB178792		Archaeal
			Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
			Thermoproteus sp. IC-033 [70772]	AB178781		Archaeal
			Thermoproteus sp. IC-070 [278053]	AB178791		Archaeal
			Vulcanisaeta distributa [164451]	AB178784		Archaeal
1849	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cordyceps prolifica [94209]	AB044640		spliceosomal
1903	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Physcia aipolia [50936]	AY773929		spliceosomal
			Physconia enteroxantha [114787]	AY773931		spliceosomal
				AF457573		spliceosomal
1923	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Byssoporia terrestris [80630]	AD001572
1927	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Aeropyrum pernix [56636]	AB019554		Archaeal; strain:TB7
				AB078021		Archaeal
				AB078019		Archaeal
				AB078020		Archaeal
				AP000062		Archaeal; replaces AB008745; strain:K1
			Staphylothermus marinus [2280]	M38363		Archaeal
				M86623		Archaeal
		cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. M0H [278049]	AB178786		Archaeal
			Vulcanisaeta distributa [164451]	AB178783		Archaeal
1929	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Buellia capitis-regum [144685]	AF457572		spliceosomal
			Physcia aipolia [50936]	AY773929		spliceosomal; unannotated
1952	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Desulfurococcus mobilis [2274]	X03263		Archaeal
		cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. 14b [278050]	AB178787		Archaeal
			Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
			Thermoproteus sp. IC-061 [70773]	AB178789		Archaeal
1974	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Byssoporia terrestris [80630]	AD001572
2076	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Buellia muriformis [196133]	AF457571		spliceosomal
2409	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. M0H [278049]	AB178786		Archaeal
			Pyrobaculum sp. M1T [278051]	AB178788		Archaeal
			Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
			Thermoproteus sp. IC-033 [70772]	AB178781		Archaeal
			Thermoproteus sp. IC-070 [278053]	AB178791		Archaeal
2445	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Hymenelia lacustris [196135]	AF457570		spliceosomal; synonym: Ionaspis lacustris
2534	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Vulcanisaeta distributa [164451]	AB178784		Archaeal
2552	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum organotrophum [2278]			Archaeal; LIT: Gene 121(1):103-110 (1992).
2601	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Staphylothermus marinus [2280]	M86623		Archaeal
				M38363		Archaeal

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