Comparative RNA Web Site and Project The Gutell Lab

Table 2B: Number of rRNA Introns, Intron Position, and Phylogenetic Group for Intron Type GroupI

Structure File Format:PS  PDF  BPSEQ 

EX	RC	IP	L	Phylogeny	Organism [TaxID]	Accession	Structure	Comment
16S	I	TBD	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cetraria ericetorum subsp. ericetorum [92079]	AF139033		IP 1516? (possibly 1521)
Cetraria ericetorum subsp. reticulata [92080]					AF139034		IP 1516? (possibly 1521)
Cetraria islandica [78064]					AF139035		IP 1516? (possibly 1521)
114		N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Symbiotaphrina buchneri [40220]	DQ248313
				Cetradonia linearis [83788]	AY648095
				Gymnoderma coccocarpum [206419]	AF523362
				Lecanora dispersa [39935]	L37734	a.I1
				Rhizoplaca chrysoleuca [112062]	AY530888
				Rhizoplaca huashanensis [239500]	AY530885
				Buellia aethalea [205603]	AJ549801
				Phaeophyscia orbicularis [116805]	AJ549804
				Physcia aipolia [50936]	AY648096
					AY648097
				Physcia caesia [116813]	AY648098
				Physcia undulata [221732]	AJ549806
				Rinodina oxydata [205642]	AJ506971
				Stegobium paniceum yeast-like symbiont [48274]	D49657	a.I1
287		N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Symbiotaphrina buchneri [40220]	DQ248313
				Lecanora dispersa [39935]	L37734	a.I1
				Rhizoplaca chrysoleuca [112062]	AY530888
				Rhizoplaca huashanensis [239500]	AY530885
				Scoliciosporum umbrinum [93123]	AY641006
				Letharia columbiana [112416]	AF221063
				Diplotomma alboatrum [205613]	AJ549802
				Diplotomma epipolium [501307]	AJ506969
				Hyperphyscia adglutinata [116796]	AJ549803
				Phaeophyscia hispidula [244694]	AY648103
				Phaeophyscia orbicularis [116805]	AJ549804
				Rinodina gennarii [221737]	AJ549808
				Bacidia schweinitzii [161808]	DQ782884
				Stegobium paniceum yeast-like symbiont [48274]	D49657	a.I1
297		N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Tryblidiopsis pinastri [66520]	DQ471035		unannotated
298		N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Ostropa barbara [271838]	AY584666
299		N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Phaeophyscia orbicularis [116805]	AJ549804
300		N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Diplotomma alboatrum [205613]	AJ549802
				Diplotomma epipolium [501307]	AJ506969
392		N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Calicium tricolor [39939]	L37733
497		N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Glomerobolus gelineus [75749]	DQ247811		intron in variable region ca. E. coli position 497
				Cetradonia linearis [83788]	AY648095
				Gymnoderma coccocarpum [206419]	AF523362		intron in variable region ca. E. coli position 497
				Parmotrema tinctorum [235862]	AY584659		intron in variable region ca. E. coli position 497
				Diplotomma alboatrum [205613]	AJ549802		intron in variable region ca E.coli position 497
				Rinodina oxydata [205642]	AJ506971
				Bacidia schweinitzii [161808]	DQ782884		intron in variable region ca. E. coli position 497
				Psoroma hypnorum [191118]	AY424261		intron in variable region ca E.coli position 497
				Lobaria pulmonaria [86794]	AF183935		in variable region near E. coli position 497
				Hymenelia epulotica [146300]	AF279393		in variable region near E. coli position 497
516		N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Thelocarpella gordensis [286411]	AY641014
				Exophiala dermatitidis [5970]	DQ823107
				Pyrenula pseudobufonia [271832]	AY641001
				Acarospora clauzadeana [286396]	AY640987
				Acarospora complanata [168909]	AF356653
				Acarospora hilaris [286392]	AY640983
				Acarospora laqueata [286393]	AY640984
				Acarospora schleicheri [88748]	AY640986
				Glypholecia scabra [286398]	AY640991
				Polysporina simplex [286400]	AY641000
				Cetradonia linearis [83788]	AY648095
				Gymnoderma coccocarpum [206419]	AF523362
				Lecanora dispersa [39935]	L37734	a.I1
				Rhizoplaca huashanensis [239500]	AY530885
				Rhizoplaca peltata [112045]	AY530887
				Scoliciosporum umbrinum [93123]	AY641006
				Parmotrema tinctorum [235862]	AY584659
	Diplotomma alboatrum [205613]			AJ549802
	Diplotomma epipolium [501307]			AJ506969
	Hyperphyscia adglutinata [116796]			AJ549803
	Physcia aipolia [50936]			AY648097
				AY648096
				AY648101
				DQ782876
	Physcia caesia [116813]			AY648100
				AY648098
	Physcia dimidiata [116814]			AJ506970
	Physcia stellaris [116821]			AY648102
	Physcia undulata [221732]			AJ549806
	Rinodina oxydata [205642]			AJ506971
	Bacidia schweinitzii [161808]			DQ782884
	Nephroma parile [203387]			AY584680
	Ostropa barbara [271838]			AY584666
	Tryblidiopsis pinastri [66520]			DQ471035		unannotated
	cellular organisms » Eukaryota » Heterolobosea » Schizopyrenida » Vahlkampfiidae » ...		Naegleria australiensis [51634]			LIT: Nuc. Acids Res. 22(22):4553-4559 (1994).
529	N	cellular organisms » Eukaryota » Heterolobosea » Acrasida » Acrasis » ...	Acrasis rosea [43695]	AF011458
788	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Alatospora acuminata [222513]	AY357261
			Thelocarpella gordensis [286411]	AY641014
			Rhynchostoma minutum [152654]	AF242268
				AF242270
				AF254663
				AF242269
			Rhynchostoma proteae [225611]	AY230152
			Pyrenula cruenta [146309]	AF279406
			Pyrenula pseudobufonia [271832]	AY641001
			Dermatocarpon americanum [146294]	AF279383
			Dermatocarpon miniatum [172328]	AY584668
				AF412409
			Endocarpon pallidulum [396380]	DQ823104
			Staurothele frustulenta [396381]	DQ823105
			Acarospora canadensis [286390]	AY640981
			Acarospora cervina [286391]	AY640982
			Acarospora cf. dissipata [168908]	AF356655
			Acarospora clauzadeana [286396]	AY640987
			Acarospora complanata [168909]	AF356653
			Acarospora hilaris [286392]	AY640983
			Acarospora macrospora subsp. macrospora [286395]	AY640985
			Glypholecia scabra [286398]	AY640991
			Pleopsidium chlorophanum [247144]	AY316151
			Polysporina simplex [286400]	AY641000
			Cladonia gracilis [111668]	AY575023
				AY575022
				AY575025
				AY575024
			Cladonia rangiferina [111670]	AY575027
				AY575026
			Gymnoderma coccocarpum [206419]	AF523362
			Rhizoplaca chrysoleuca [112062]	AY530888
			Strangospora pinicola [286408]	AY641011
				AY641010
			Flavoparmelia caperata [172615]	AY584663
			Amandinea punctata [116786]	AJ549800
			Buellia aethalea [205603]	AJ549801
			Diplotomma alboatrum [205613]	AJ549802
			Diplotomma epipolium [501307]	AJ506969
			Phaeophyscia hispidula [244694]	AY648103
			Phaeophyscia orbicularis [116805]	AJ549805
			Physcia aipolia [50936]	AY648096
				AY648097
				AY648101
				AY648099
				DQ782876
			Physcia caesia [116813]	AY648098
				AY648100
			Physcia dimidiata [116814]	AJ506970
			Physcia stellaris [116821]	AY648102
			Physcia undulata [221732]	AJ549806
			Tornabea scutellifera [205647]	AJ549810
			Protoblastenia calva [258893]	AY548822
				AY548821
			Protoblastenia rupestris [258902]	AY548820
			Xanthoria elegans [88742]	AY641017
			Baeomyces placophyllus [106415]	AF356657
			Coenogonium luteum [146297]	AF279386		synonym Dimerella lutea
			Echinoplaca strigulacea [394997]	DQ782878
			Petractis clausa [168918]	AF356661
			Simonyella variegata [92844]	AY584669
			Tryblidiopsis pinastri [66520]	DQ471035		unannotated
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » environmental samples » ...	uncultured fungus [175245]	AY168895
789	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Lecanora dispersa [39935]	L37734	a.I1
891	N	cellular organisms » Eukaryota » Heterolobosea » Acrasida » Acrasis » ...	Acrasis rosea [43695]	AF011458
896	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Glomerobolus gelineus [75749]	DQ247811
911	N	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Fuligo septica [159720]	AJ584697
934	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Acarospora canadensis [286390]	AY640981
			Acarospora cf. dissipata [168908]	AF356655
			Acarospora hilaris [286392]	AY640983
			Acarospora macrospora subsp. macrospora [286395]	AY640985
			Polysporina simplex [286400]	AY641000
			Sarcogyne regularis var. regularis [286403]	AY641003
			Biatoridium monasteriense [286569]	AY640988
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » environmental samples » ...	uncultured fungus [175245]	AY168894
935	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Strangospora pinicola [286408]	AY641011
				AY641010
940	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Umbilicaria yunnana [284238]	AY648118
			Cladonia gracilis [111668]	AY575028
				AY575029
				AY575031
				AY575030
			Cladonia rangiferina [111670]	AY575032
				AY575033
				AY575034
			Lecanora allophana [108934]			LIT: Curr. Genet. 35(5):536-541 (1999).
			Rhizoplaca chrysoleuca [112062]	AY530880
				AY530881
				AY530879
				AY530888
				AY530882
			Rhizoplaca peltata [112045]	AY530887
			Mycoblastus sanguinarius [312200]	DQ782879
			Cetraria islandica [78064]			LIT: Curr. Genet. 35(5):536-541 (1999).
			Hypogymnia physodes [87259]			LIT: Curr. Genet. 35(5):536-541 (1999).
			Parmelia saxatilis [87261]			LIT: Curr. Genet. 35(5):536-541 (1999).
			Usnea filipendula [192176]			LIT: Curr. Genet. 35(5):536-541 (1999).
			Usnea hirta [192177]			LIT: Curr. Genet. 35(5):536-541 (1999).
			Usnea rigida [192178]			LIT: Curr. Genet. 35(5):536-541 (1999).
			Usnea subfloridana [143891]			LIT: Curr. Genet. 35(5):536-541 (1999).
			Vulpicida juniperina [87264]			LIT: Curr. Genet. 35(5):536-541 (1999).
			Diplotomma alboatrum [205613]	AJ549802
			Diplotomma epipolium [501307]	AJ506969
			Hyperphyscia adglutinata [116796]	AJ549803
			Rinodina oxydata [205642]	AJ506971
943	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Agonimia sp. AFTOL 684 [395001]	DQ782885
			Dermatocarpon miniatum [172328]	AY584668
			Endocarpon pallidulum [396380]	DQ823104
			Staurothele frustulenta [396381]	DQ823105
			Acarospora bullata [286389]	AY640980
			Acarospora cervina [286391]	AY640982
			Acarospora clauzadeana [286396]	AY640987
			Acarospora complanata [168909]	AF356653
			Acarospora hilaris [286392]	AY640983
			Acarospora laqueata [286393]	AY640984
			Acarospora macrospora subsp. macrospora [286395]	AY640985
			Glypholecia scabra [286398]	AY640991
			Polysporina simplex [286400]	AY641000
			Flavoparmelia caperata [172615]	AY584663
			Parmotrema tinctorum [235862]	AY584659
			Phaeophyscia orbicularis [116805]	AJ549805
			Physcia aipolia [50936]	AY648101
				AY648097
				AY648096
			Physcia caesia [116813]	AY648100
			Rinodina gennarii [221737]	AJ549808
			Tornabea scutellifera [205647]	AJ549810
			Caloplaca xanthostigmoidea [216830]	AJ535286
			Fulgensia bracteata [157765]	AJ535288
			Teloschistes exilis [271840]	AY584671
			Echinoplaca strigulacea [394997]	DQ782878
			Ostropa barbara [271838]	AY584666
			Spathularia flavida [33158]			LIT: Mol. Biol. Evol. 12(2):208-218.
956	N	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Didymium iridis [5793]	X71792
				AJ938153
				AJ938154
			Fuligo septica [159720]	AJ584697
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Sporobolomyces dimmenae [69977]	D66881
		cellular organisms » Eukaryota » Heterolobosea » Acrasida » Acrasis » ...	Acrasis rosea [43695]	AF011458
966	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Sporobolomyces dimmenae [69977]	D66881
989	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Glomerobolus gelineus [75749]	DQ247811
			Hyphozyma lignicola [177195]	AJ496239
			Rhynchostoma minutum [152654]	AF242269
				AF254663
			Dermatocarpon luridum [172326]	AY640989
			Endocarpon pallidulum [396380]	DQ823104
			Staurothele frustulenta [396381]	DQ823105
			Cetradonia linearis [83788]	AY648095
			Cladia retipora [50930]	U64681
			Baeomyces placophyllus [106415]	AF356657
			Petractis clausa [168918]	AF356661
1046	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cladonia grayi [27339]	Z14026	a.I1
			Cladonia merochlorophaea [5200]	Z14025	a.I1	Formerly Cladonia merochlorophaea Asah
			Gymnoderma coccocarpum [206419]	AF523362
			Lecanora dispersa [39935]	L37734	a.I1
			Parmotrema tinctorum [235862]	AY584659
1049	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Amandinea punctata [116786]	AJ549800
			Hyperphyscia adglutinata [116796]	AJ549803
			Physcia aipolia [50936]	AY648099
			Physcia caesia [116813]	AY648100
			Physcia stellaris [116821]	AY648102
			Petractis luetkemuelleri [185330]	AF465461
			Coccomyces dentatus [265080]	AY544701
1052	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Symbiotaphrina buchneri [40220]	DQ248313
			Staurothele frustulenta [396381]	DQ823105
			Umbilicaria flocculosa [164624]	AY648111
			Umbilicaria yunnana [284238]	AY648118
			Stegobium paniceum yeast-like symbiont [48274]	D49657	a.I1
1078	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ...	Caulerpa sertularioides [76315]	AY389514
1199	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Endocarpon pallidulum [396380]	DQ823104
			Staurothele frustulenta [396381]	DQ823105
			Mycocalicium albonigrum [39942]	L37736
			Cetradonia linearis [83788]	AY648095
			Gymnoderma coccocarpum [206419]	AF523362
			Mycoblastus sanguinarius [312200]	DQ782879		misannotated
			Diplotomma alboatrum [205613]	AJ549802
			Diplotomma epipolium [501307]	AJ506969
			Phaeophyscia hispidula [244694]	AY648103
			Phaeophyscia orbicularis [116805]	AJ549805
			Physcia aipolia [50936]	AY648099
			Physcia dimidiata [116814]	AJ506970 AJ507615		implicit from annotations
			Rinodina oxydata [205642]	AJ506971
			Tornabea scutellifera [205647]	AJ549810
			Protoblastenia siebenhaariana [258892]	AY425627
			Acarosporina microspora [271836]	AY584667
			Ostropa barbara [271838]	AY584666
1210	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Alatospora acuminata [222513]	AY357261
			Symbiotaphrina buchneri [40220]	DQ248313
			Cladonia merochlorophaea [5200]	Z14025	a.I1	Formerly Cladonia merochlorophaea Asah
			Gymnoderma coccocarpum [206419]	AF523362
			Lecanora dispersa [39935]	L37734	a.I1
			Rhizoplaca chrysoleuca [112062]	AY530881
				AY530879
				AY530888
				AY530882
				AY530880
			Diplotomma alboatrum [205613]	AJ549802
			Diplotomma epipolium [501307]	AJ506969
			Hyperphyscia adglutinata [116796]	AJ549803
			Phaeophyscia hispidula [244694]	AY648103
			Phaeophyscia orbicularis [116805]	AJ549805
			Physcia aipolia [50936]	AY648099
			Physcia caesia [116813]	AY648100
				AY648098
			Physcia dimidiata [116814]	AJ507615
			Physcia stellaris [116821]	AY648102
			Protoblastenia calvella [258900]	AY425646
				AY425647
			Protoblastenia laeta [258901]	AY548818
				AY425653
				AY425652
				AY425651
				AY425650
			Protoblastenia lilacina [258894]	AY425629
			Stegobium paniceum yeast-like symbiont [48274]	D49657	a.I1
			Piriformospora indica [65672]	AY293147
			Sporobolomyces dimmenae [69977]	D66881
			Bannoa hahajimensis [111969]	AB035895
				AB035896
				AB035894
				AB035897
1384	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Phaeophyscia hispidula [244694]	AY648103
			Phaeophyscia orbicularis [116805]	AJ549805
1389	N	cellular organisms » Eukaryota » Amoebozoa » Centramoebida » Acanthamoebidae » ...	Acanthamoeba lenticulata [29196]	U94734		strain 407-3a
		cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Didymium iridis [5793]	AJ938151
				AJ938150
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Hyphozyma sanguinea [202759]	AJ496238
			Endocarpon pallidulum [396380]	DQ823104
			Staurothele frustulenta [396381]	DQ823105
			Cladonia merochlorophaea [5200]	Z14025	a.I1	Formerly Cladonia merochlorophaea Asah
			Mycoblastus sanguinarius [312200]	DQ782879
			Physcia undulata [221732]	AJ549806
			Rinodina oxydata [205642]	AJ506971
1506	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Hyphozyma sanguinea [202759]	AJ496238
			Symbiotaphrina buchneri [40220]	DQ248313
			Endocarpon pallidulum [396380]	DQ826735
			Staurothele frustulenta [396381]	DQ826736
			Phaeophyscia ciliata [116800]	AF224354
				AF224454
				AF224450
				AF224456
				AF224448
				AF224455
				AF224447
				AF224457
			Phaeophyscia constipata [116801]	AF224374
			Phaeophyscia endococcina [116802]	AF224444
			Phaeophyscia endophoenicea [116803]	AF224445
			Phaeophyscia hispidula [244694]	AY303138		5' end of intron missing from GB entry
			Phaeophyscia orbicularis [116805]	AF224452
				AF224460
				AF224449
				AF224459
				AJ549805
				AF224458
				AF224453
				AF224451
			Phaeophyscia sciastra [116806]	AF224446
			Physcia undulata [221732]	AJ549806
			Teloschistes contortuplicatus [180404]	AJ421258
			Teloschistes lacunosus [111579]	AJ421260
				AF098405
				AF098406
				AJ421259
			Teloschistes villosus [111577]	AJ421262
				AF098408
				AJ421261
				AF098407
				AJ421263
			Dendryphiopsis atra [85923]	AF053731
			Naemacyclus niveus [64356]	AF013223		synonym Cyclaneusma niveum
			Stegobium paniceum yeast-like symbiont [48274]	D49657	a.I1
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » environmental samples » ...	uncultured fungus [175245]	AM260902
1516	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cladonia arbuscula [174044]	AY170807
				AY170794
				AY170817
				AY170814
				AY170813
				AY170809
				AY170808
				AY170815
				AY170795
				AY170793
				AY170806
				AY170810
				AY170816
				AY170811
				AY170812
			Cladonia grayi [27339]	Z14026	a.I1
			Cladonia merochlorophaea [5200]	Z14025	a.I1	Formerly Cladonia merochlorophaea Asah
			Cladonia mitis [195774]	AY170798
				AY170803
				AY170820
				AY170796
				AY170797
				AY170818
				AY170819
				AY170805
				AY170804
				AY170799
				AY170800
				AY170802
				AY170801
			Lecanora dispersa [39935]	L37734	a.I1
			Rhizoplaca chrysoleuca [112062]	AY509793
				AY509794
				AY509792
				AY509795
				AY509796
			Rhizoplaca huashanensis [239500]	AY530885
			Rhizoplaca melanophthalma [112044]	AY509791
			Rhizoplaca subdiscrepans [111843]	AY509805
				AY509789
				AY509804
			Ahtiana sphaerosporella [78062]	AF141859
			Arctocetraria nigricascens [124740]	AF254628
			Asahinea chrysantha [180472]	AF451767
				AF451766
			Bryoria fuscescens [172611]	AF451736
			Cavernularia lophyrea [94397]	AF115757		possibly IP 1521
				AF141367		possibly IP 1521
			Cetraria arenaria [112441]	AF115758		possibly IP 1521
			Cetraria ericetorum subsp. ericetorum [92079]	AF228290		possibly IP 1521
			Cetraria islandica [78064]	AF072225		possibly IP 1521
			Cetraria islandica subsp. antarctica [121113]	AF228293
				AF254627
			Cetraria islandica subsp. crispiformis [121112]	AF228295
				AF228294
			Cetraria islandica subsp. islandica [95628]	AF228299
				AF228297
				AF228296
				AF228298
			Cetraria nigricans [124737]	AF254629
				AF254630
			Cetraria odontella [121111]	AF228303
				AF228304
				AF228285
Dactylina arctica [112443]	AF115760		possibly IP 1521
Hypogymnia physodes [87259]	AF115761		possibly IP 1521
	AF141368		possibly IP 1521
Melanelia hepatizon [91758]	AF141369		possibly IP 1521
Nephromopsis ahtii [170998]	AF404123		5' exon not present; genbank synonym: Tuckneraria ahtii
Nephromopsis komarovii [180483]	AF451779
Nephromopsis laureri [150892]	AF451786		genbank synonym: Tuckneraria laureri
Nephromopsis stracheyi [180486]	AF451785
Parmelia ernstiae [183580]	AF412309
	AF412310
Parmelia saxatilis [87261]	AF410835
	AF141370		possibly IP 1521
	AF451770
	AF410837
	AF451772
	AF451771
	AF410836
Pseudephebe pubescens [172637]	AF451738
Vulpicida pinastri [78078]	AF072239		possibly IP 1521
	AF139031		IP 1516? (possibly 1521)
Xanthoparmelia semiviridis [172613]	AF451746		synonym Chondropsis semiviridis
Buellia aethalea [205603]	AJ549801
Diplotomma alboatrum [205613]	AJ549802
Diplotomma epipolium [501307]	AJ506969
Hyperphyscia adglutinata [116796]	AJ549803
Phaeophyscia ciliata [116800]	AF224454
	AF224448
	AF224457
	AF224354
	AF224456
	AF224450
	AF224455
	AF224447
Phaeophyscia constipata [116801]	AF224374
Phaeophyscia hispidula [244694]	AY303138
Phaeophyscia nigricans [116804]	AF224375
Phaeophyscia orbicularis [116805]	AF224460
	AJ549805
	AF224453
	AF224449
	AF224451
	AF224452
	AF224458
	AF224459
Physcia adscendens [116809]	AF224423
	AF224430
	AF224422
Physcia aipolia [50936]	AF224391
	AF224397
	AY303136
	AF224390
	AY303132
	AF224394
	AF224392
	AF224398
	AF224396
	AF224393
	AF224432
	AY303135
	AF224431
	AY303133
	AF224383
	AF224395
Physcia albinea [116810]	AF224433
Physcia alnophila [116811]	AF224434
	AF224381
	AF224380
	AF224382
Physcia biziana [116812]	AF224417
Physcia caesia [116813]	AF224387
	AF224435
	AF224379
	AF224389
	AY303134
	AY303131
	AF224385
	AF224384
	AF224388
	AF224437
	AF224386
	AF224436
	AY498690
	AF224438
Physcia dimidiata var. dimidiata [116815]	AF224415
	AF224416
Physcia dimidiata var. ornata [116816]	AF224414
Physcia dubia [116817]	AF224401
	AF224399
	AF224420
	AF224419
	AF224418
	AF224421
	AF224411
	AF224412
	AF224413
	AF224403
	AF224440
	AF224402
	AF224439
	AF224400
Physcia leptalea [116818]	AF224441
	AF224428
	AF224429
Physcia magnussonii [116819]	AF224376
	AF224377
Physcia phaea [116820]	AF224378
Physcia stellaris [116821]	AF224406
	AY498689
	AF224405
	AF224404
	AF224408
	AF224410
	AY303137
	AF224442
	AF224409
	AF224407
Physcia tenella var. marina [116823]	AF224426
	AF224424
Physcia tenella var. tenella [116824]	AF224427
	AF224425
Physcia undulata [221732]	AJ549806
Rinodina gennarii [221737]	AJ549808
Rinodina oxydata [205642]	AJ506971
Tornabea scutellifera [205647]	AJ549810
Biatora efflorescens [99243]	AJ247554
Biatora fallax [99245]	AJ247526
	AJ247527
	AJ247548
Biatora helvola [99246]	AJ247557
	AJ247556
	AJ247516
	AJ247517
	AJ247515
	AJ247541
	AJ247514
	AJ247544
	AJ247545
	AJ247542
	AJ247549
	AJ247550
	AJ247547
	AJ247543
	AJ247546
	AJ247518
Biatora ocelliformis [99249]	AJ247520
	AJ247521
Biatora pseudohelvola [99250]	AJ247570
	AJ247558
	AJ247572
	AJ247571
Biatora sphaeroidiza [99251]	AJ247551
	AJ247553
	AJ247552
Biatora toensbergii [99254]	AJ247519
Lophodermium conigenum [187512]	AY183364
Lophodermium pinastri [64358]	AF462434
Lophodermium seditiosum [128023]	AF462435
Lophodermium sp. SL1 [368790]	AB247944
IA3	508	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Lobochlamys segnis [52035]	L39865		synonym Chlamydomonas pallidostigmatica
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Closteriopsis acicularis [82138]	Y17632		was Chlorella acicularis
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ...	Caulerpa sertularioides [76315]	AY389514
	531	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas moewusii [3054]	X15850
	793	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Stigeoclonium helveticum [55999]	DQ630521
				Lobochlamys segnis [52035]	L39865		synonym Chlamydomonas pallidostigmatica
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ...	Caulerpa sertularioides [76315]	AY389514
		M	cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara sp. Qiu 96222 [81819]	AF191800		incorrect annotation
				Chara vulgaris [55564]	AY267353
				Takakia lepidozioides [37425]	AF058672
				Sphagnum palustre [13805]	AF058671
				Polytrichum commune [3213]	AF244564
				Isoetes histrix [50297]	AF058669
IB1	1403	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi/Metazoa incertae sedis » Ichthyosporea » ...	Amoebidium parasiticum [4881]	AF538044
IC1	TBD	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Exophiala prototropha [86340]	X91900		synonym Pullularia prototropha
				Paecilomyces variotii [45996]	Z69593
				Raffaelea tritirachium [45345]	U81484
				Graphiola phoenicis [5276]	AB000961
					AB000963
	40	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Dictyochloris fragrans [179863]	AF367860
				Dictyochloris pulchra [179864]	AF367862
				Pseudodidymocystis planctonica [113526]	AB037087
	156	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Scenedesmus arcuatus var. platydiscus [119582]	AY170312
				Kirchneriella aperta [117505]	AJ271859
				Selenastrum capricornutum [118073]	AF169628
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella sp. MBIC10744 [284943]	AB183634
				Chlorella trebouxioides [63676]	AB006048
				Amphikrikos cf. nanus Hegewald 1995-26 [120763]	AF228690		synonym Amphikrikos sp. Hegewald 1995-26
				'Chlorella' saccharophila [3082]	AB058310	b.I1
				Chlorella sp. MDL4-3 [226315]	AY197631
	170	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Selenastrum capricornutum [118073]	AF169628
	296	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	leotiomycete sp. G21-24-A204 [220857]	AY190275		tentative subclass assignment
				leotiomycete sp. G21-24-PU162 [220859]	AY190277		tentative subclass assignment
	323	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Neodesmus danubialis [113524]	AB037086
				Scenedesmus pupukensis [42698]	X91267		was Kermatia pupukensis
			cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella sorokiniana [3076]	X73993	a.I1
				Choricystis minor [41300]	AY762605
	516	N	cellular organisms » Eukaryota » Amoebozoa » Centramoebida » Acanthamoebidae » ...	Acanthamoeba griffini [29195]	U02540 U07412	b.I1
					S81337	b.I1
				Acanthamoeba sp. KA/E4 [156883]	AF349045
				Acanthamoeba sp. KA/MSS2 [215574]	AY173013
				Acanthamoeba sp. KA/MSS6 [215575]	AY173014
				Acanthamoeba sp. KA/MSS7 [215576]	AY173015
			cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Badhamia gracilis [227449]	AJ555451
				Fuligo septica [159720]	AJ555452
					AJ584697
				Physarum flavicomum [35220]	AJ555453 AJ555454
			cellular organisms » Eukaryota » Euglenozoa » Euglenida » Heteronematales » ...	Ploeotia costata [211463]	AF525486
			cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Spizellomyces punctatus [109760]	AY546684
			cellular organisms » Eukaryota » Heterolobosea » Schizopyrenida » Vahlkampfiidae » ...	Naegleria andersoni [5764]			LIT: J. Eukaryot. Microbiol. 40(2):179-187 (1993).
					Z16417
					X78280
				Naegleria clarki [36333]	X78281
					AF338422
					AF338420
					AF338417
					AF338419
					AF338418
				Naegleria gruberi [5762]	X78278
				Naegleria italica [36334]	X78277
				Naegleria jamiesoni [36335]	X78279
				Naegleria sp. [37103]	Y10190
					X79071
					X79070
					X79069
					AJ001399
			cellular organisms » Eukaryota » Rhodophyta » Bangiophyceae » Bangiales » ...	Bangia atropurpurea [31347]	AF172565		England River Thames/BI12; exon sequence from AF043365
					D88387	b.I1
					AB053491
					AF172563		Ireland/IR; exon sequence from AF043365
					AF172562		Netherlands/NL: Ysselmeer; exon sequence from AF169341
					AF172566		Great Lakes/GL; exon sequence from AF043365
					AF172564		Italy/IT; exon sequence from AF043365
				Bangia fuscopurpurea [101920]	AF172571		Nova Scotia/NS; exon sequence from AF169337
					AF172560		Germany: Helgoland/HL; exon sequence from AF175532
					AF172558		Greece/GR; exon sequence from AF175533
					AF342745	b.I1
					AF172561		Massachusetts/MA; exon sequence from AF043362
AF172568						California/CA; exon sequence from AF043356
AF172567						Victoria/BC2; exon sequence from AF043359
AF172572					b.I1	Oregon/OR; exon sequence from AF043358
AB053489
AB053488
AF172569						Ireland/IR; exon sequence from AF175534
AF172570						Newfoundland/NF; exon sequence from AF043357
AF172557					b.I1	Australia/AU; exon sequence from AF175531
AF172556						France: Nice; exon sequence from AF175535
AF172555						New Jersey/NJ; exon sequence from AF169335
AF172559						North Carolina/NC; exon sequence from AF043363
Bangia sp. strain BDS725 [224384]				AY184337
Bangia sp. strain BGA458 [224387]				AY184341
Bangia sp. strain BNS727 [224391]				AY184345
Bangia sp. strain BWP662 [224394]				AY184348
Bangia sp. [76713]				AF172578	b.I1	Virgin Islands/VIS7; exon sequence from AF043364
Porphyra capensis [298899]				AY766361
Porphyra cinnamomea [199484]				AF136418 AF136419
Porphyra dentata [76160]				AB013183
Porphyra haitanensis [76159]				AB015795
Porphyra kanakaensis [139729]				AF172580		exon sequence from AF175556
Porphyra katadae [76161]				AB013184
Porphyra leucosticta [35146]				AF172576		exon sequence from AF175557
	AF342746	b.I1
Porphyra lucasii [209571]	AY139685			synonym: Porphyra sp. WELT A23051
Porphyra nereocystis [139730]	AF172577			exon sequence from AF175542
Porphyra onoi [78445]	AB015794
Porphyra pseudolinearis [81939]	AB013185
Porphyra purpurea [2787]	AF172575			exon sequence from AF175551
Porphyra rakiura [199481]	AY139684
	AY139682
	AF136425
Porphyra sp. [2790]	AF136420
	AB013182
Porphyra suborbiculata [76158]	AF378660			synonym Porphyra lilliputiana
	AF378661			synonym Porphyra lilliputiana
	AF378652
	AF136424			synonym Porphyra lilliputiana
	AF378662			synonym Porphyra lilliputiana
	AF378663			synonym Porphyra lilliputiana
	AF378664			synonym Porphyra lilliputiana
	AF378665			synonym Porphyra lilliputiana
	AF378655
	AF378656
	AF378657
	AF378650			synonym Porphyra lilliputiana
	AF378654			synonym Porphyra carolinensis
	AF378651			synonym Porphyra lilliputiana
	AB013180
	AF378658			synonym Porphyra lilliputiana
	AF378649			synonym Porphyra lilliputiana
	AF378653			synonym Porphyra carolinensis
	AF133792		synonym Porphyra carolinensis
	AB015796
	AF378659		synonym Porphyra lilliputiana
Porphyra tenera [2785]	AB029882		P2 P2.1 missing some part
	AB000964
	AB100959
	AB100958
	AB029884		P2 P2.1 missing some part
	AB101442
	AB029883		P2 P2.1 missing some part
	D86237		intron not annotated
	D86236		intron not annotated
	AB029881
	AB013176
	AB013175
	AB029879
	AB029880
Porphyra tenuipedalis [78446]	AB015797
Porphyra torta [139733]	AF172579		exon sequence from AF175552
Porphyra umbilicalis [2786]	AF172573		New Jersey/NJ; exon from AF175553
Porphyra yezoensis [2788]	AY131005
	AB013178
	AB013177
	D79976	a.I1
Porphyra sp. Baleia [298901]	AY766358
Porphyra sp. Wales SW1 [144555]	AF172574		exon from AF175554
Porphyra sp. strain GRB145 [224395]	AY184349
Porphyra sp. strain GRB488 [224396]	AY184350
cellular organisms » Eukaryota » Rhodophyta » Rhodellophyceae » Rhodellales » ...	Rhodella sp. MBIC10593 [284791]	AB183619
cellular organisms » Eukaryota » stramenopiles » Pelagophyceae » Aureoumbra » ...	Aureoumbra lagunensis [44058]	U40258	b.I1	annotated as insertion
651	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Coelastrum pseudomicroporum [183313]	AF388381		intron in variable region near E. coli position 651
			Raphidocelis subcapitata [307507]	AY846381		intron in variable region near E. coli position 651
		cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Amphikrikos cf. nanus Hegewald 1995-26 [120763]	AF228690		intron in variable region near E. coli position 651; synonym Amphikrikos sp. Hegewald 1995-26
788	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Ceramothyrium carniolicum [134355]	AF346418
			Geosmithia viridis [106120]	AB033527
			Penicillium oblatum [106126]	AB033529
			Penicillium radicum [228353]	AY256855
			Penicillium sabulosum [106127]	AB033530
			Delitschia didyma [152651]	AF242264
			Rhizoscyphus ericae [5183]	AY762621
			Hyphodiscus hymeniophilus [353542]	DQ227258
			Myriosclerotinia caricis-ampullaceae [87227]	AJ226069
			Myriosclerotinia curreyana [87228]	AJ226071
				AJ226070
			Myriosclerotinia dennisii [38444]	AJ226072		strain: 453.2
			Myriosclerotinia scirpicola [38443]	AJ226076
				AJ226075
				AJ226074
				AJ226073
			Phialocephala sphaeroides [271845]	AY524844
			Ascolacicola austriaca [152650]	AF242263
			Barrmaelia oxyacanthae [101485]	AF064048
			Muscodor sp. A10-1 [172111]	AY049023
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » environmental samples » ...	uncultured fungus [175245]	AY168915
				AY168914
891	N	cellular organisms » Eukaryota » Alveolata » Ciliophora » Intramacronucleata » ...	Acineta sp. OSW-2003-1 [239361]	AY332717
			Acineta sp. OSW-2003-2 [239362]	AY332718
			Acineta sp. OSW-2003-3 [239363]	AY332719
			Tokophrya lemnarum [168139]	AY332721
				AY332720
898	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Naohidea sebacea [112072]	AY123302
943	N	cellular organisms » Eukaryota » Amoebozoa » Centramoebida » Acanthamoebidae » ...	Acanthamoeba lenticulata [29196]	U94738
				U94735
				U94736
				U94737
				U94741
				U02539		ATCC 30841
		cellular organisms » Eukaryota » Amoebozoa » Tubulinea » Euamoebida » ...	Hartmannella vermiformis [5778]	DQ123623
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Oedogoniomyces sp. CR84 [252682]	AY635839
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Protomyces inouyei [27332]	AY548295
				D11377	a.I1
			Protomyces macrosporus [48147]	D85143	a.I1
			Protomyces pachydermus [48148]	D85142	a.I1
			Arthrobotrys cylindrospora [47240]	AF106538		synonym Dactylella cylindrospora
			Dactylella oviparasitica [219654]	AY185772
			Monacrosporium arcuatum [97335]	AF106527
			Capronia pilosella [45095]	AY316152
			Exophiala calicioides [135514]	AB007685		was Graphium calicioides
				AB007686		was Graphium calicioides
			Exophiala dermatitidis [5970]	X78481
				DQ823107
				Z75304	a.I1
			Byssochlamys fulva [89137]	AB023941
				AY526482
			Paecilomyces variotii [45996]	AB023946
			Byssochlamys zollerniae [89138]	AY526485
				AB023940
			Penicilliopsis clavariiformis [70111]	AB003945	a.I1
			Geosmithia argillacea [69808]	AB012951		str. IAM14726
				AB013733		str. IFO 31128
			Geosmithia viridis [106120]	AB033527
			Paecilomyces pascua [106128]	AB033528
			Penicillium argillaceum [103783]	AB033531
				AB033533
				AB033532
			Penicillium oblatum [106126]	AB033529
			Penicillium sabulosum [106127]	AB033530
			Sagenomella griseoviridis [89793]	AB024590
			Ajellomyces capsulatus [5037]	U57101	a.I1	FLs1
				Z75305	a.I1	CBS213.53
				U57103	a.I1	G186B
				U57102	a.I1	G184B
				Z67752
			Pleopsidium chlorophanum [247144]	AY316151
			Pseudocyphellaria crocata [161975]	AY424253		misannotated as two introns
			Xanthoria andina [216827]	AJ535290
			Hymenelia epulotica [146300]	AF279393
			Peltula umbilicata [169193]	DQ782887
			Roccella boergesenii [279123]	AY548807
			Kirschsteiniothelia aethiops [147564]	AY016344
			Dothidea ribesia [147563]	AY016343
			Delitschia didyma [152651]	AF242264
			Phaeosphaeria avenaria [55068]	AY544725
			Pyxidiophora arvernensis [45041]	U43339
			Neofabraea malicorticis [108569]	AY544706
			Chlorociboria aeruginosa [54693]	AF292087
			Neocudoniella radicella [271844]	AY524843
			Rhizoscyphus ericae [5183]	AY228753		synonym Hymenoscyphus ericae
				AY762621
				AY762620
			Hyphodiscus hymeniophilus [353542]	DQ227258
			Lachnum hyalopus [199676]	AY120858
			Lachnum sclerotii [47825]	AY120860
			Monilinia fructicola [38448]	Y14211	a.I1
				AF257088
AF257089
AY544724
AF257090
AF257091
AF257092
AF257093
AF257094
AF010505
Sclerotinia trifoliorum [28548]	AY187069
	AY187072
	AY187075
	AY187077
Phialocephala fortinii [62722]	AY524846
Phialocephala sphaeroides [271845]	AY524844
Geomyces pannorum var. pannorum [79859]	AB015785
Connersia rilstonii [95320]	AF096174
Coccomyces dentatus [265080]	AY544701
Rhexocercosporidium sp. DSE48.1b [301706]	AJ864396
leotiomycete sp. G2-5 R322 [248020]	AY382647
leotiomycete sp. G21-24-A14 [220855]	AY190279
leotiomycete sp. G21-24-A201 [220856]	AY190274
leotiomycete sp. G21-24-A204 [220857]	AY190275
leotiomycete sp. G21-24-KI129 [220858]	AY190276
leotiomycete sp. G21-24-RU19 [220860]	AY190278
Bionectria ochroleuca [29856]	AB003950 AB013739		synonym Nectria ochroleuca
	AB013010		synonyms Nectria aureofulva, Bionectria aureofulva
	AB012952		synonym Nectria ochroleuca
Mycoarachis inversa [29864]	AB013736		str. ATCC 22107
	AB012953		str. IAM 14639
Nigrosabulum globosum [95328]	AF096180
Ochronectria calami [110588]	AY489685
Metarhizium anisopliae [5530]	AF487276
Paecilomyces cicadae [181121]	AB085886
	AB085887
	AB085888
	AB086630
	AB086631
Cordyceps bassiana [176275]	AF398400		GenBank anamorph Beauveria bassiana
	AB237657
	AF398396		GenBank anamorph Beauveria bassiana
	AF398399		GenBank anamorph Beauveria bassiana
	AB079125		GenBank anamorph Beauveria bassiana
	AB079609		GenBank anamorph Beauveria bassiana
	AF464942		GenBank anamorph Beauveria bassiana
	AF280633		GenBank anamorph Beauveria bassiana
	AF464941		GenBank anamorph Beauveria bassiana
	AF398395		GenBank anamorph Beauveria bassiana
	AF479738		GenBank anamorph Beauveria bassiana
	AF464940		GenBank anamorph Beauveria bassiana
	AF479736		GenBank anamorph Beauveria bassiana
	AB079608		GenBank anamorph Beauveria bassiana
	AF479737		GenBank anamorph Beauveria bassiana
	AF398398		GenBank anamorph Beauveria bassiana
	AF464939		GenBank anamorph Beauveria bassiana
	AF398397		GenBank anamorph Beauveria bassiana
Cordyceps brongniartii [118266]	AB258368
	AB027335
	AY282746
	AF398401
	AF398402
	AF479735
	AB106649
	AB237658		unannotated
Cordyceps cardinalis [224370]	AB237660		unannotated
Cordyceps kyushuensis [259534]	AY465958
Cordyceps militaris [73501]	AB084156
	AB070373
	AB070375
	AF327392
	AB233336
	AB255603		unannotated
	AB027333
	AB070374
Cordyceps pruinosa [129524]	AB044629
Cordyceps pseudomilitaris [153663]	AF327394
Cordyceps sp. 97003 [94217]	AB027329
Cordyceps sp. 97005 [130799]	AB044630
Cordyceps sp. 97009 [94216]	AB027332
Cordyceps tuberculata [72229]	AF327401
Torrubiella flava [219582]	AB100609
Gibellula formosana [219212]	AB100360
Isaria japonica [72233]	AB016607
Hypocrea citrina [173943]	AY544693
Melanopsamma pomiformis [80381]	AY489677
Fusarium phaseoli [120645]	AF150482		GenBank synonym Fusarium solani f. sp. phaseoli
	AF150481		GenBank synonym Fusarium solani f. sp. phaseoli
Fusarium solani f. sp. piperis [89880]	AF150487
Ustilaginoidea virens [124427]	AB116645
	AB105954
	AB162148
Halosarpheia fibrosa [45828]	AF352078		unannotated; sequence is missing 5' end
Halosarpheia marina [173433]	AF352082		unannotated
Natantispora retorquens [85911]	AF352087		unannotated; sequence is missing 5' end; synonym Halosarpheia retorquens
Monodictys castaneae [71663]	Y11715
Pseudallescheria boydii [5597]	U43915
	U43914
Graphium basitruncatum [118975]	AB038421
Graphium eumorphum [67635]	AB007684
Graphium penicillioides [67620]	AB007681
Graphium putredinis [67633]	AB007683
Verticillium dahliae var. longisporum [100787]	AF153421		synonym Verticillium longisporum
Pleurostoma ootheca [308474]	AY761074
Coniochaeta ligniaria [177197]	AJ496242
	AY198389
Coniochaeta malacotricha [177198]	AJ496243
Apioplagiostoma aceriferum [148325]	AF281664
Leucostoma cinctum [105485]	AF191167
Pseudohalonectria lignicola [42149]	U31812
Cephalotheca sulfurea [95345]	AF096173
Paecilomyces inflatus [218615]	AB099943
Barrmaelia oxyacanthae [101485]	AF064048
Rosellinia necatrix [77044]	AB014044
Xylaria acuta [114808]	AY544719
Xylaria polymorpha [77046]	AB014043
Xylariaceae sp. F9 [246510]	AY315419
Bourdotia sp. GEL5065 [282314]	DQ234544		missing 3' end of intron
Artomyces austropiperatus [182278]	AY298775
Artomyces pyxidatus [48021]	AY298770
	AY298772
	AY298771
	AY298773
	U59066		GenBank synonym Clavicorona pyxidata
	AY298774
	AY298784
Auriscalpium villipes [182291]	AY298776
Lentinellus castoreus [194904]	AY298780
	AY298781
Lentinellus cochleatus [194905]	AY298783
Lentinellus flabelliformis [233006]	AY298782
Lentinellus micheneri [233007]	AY298779
Lentinellus montanus [5355]	AY298778
	U59076
	U59077
Lentinellus omphalodes [5356]	U59078
Lentinellus subaustralis [182292]	AY298777
Descolea maculata [171508]	DQ440633
Phaeocollybia festiva [260914]	DQ462516
Simocybe serrulata [110245]	DQ465343
Hygrocybe miniata f. longipes [378287]	DQ444859
Chondrostereum purpureum [58369]	AF082851
Schizophyllum sp. MI 01 [365517]	AB245444
Schizophyllum sp. MI 15 [365518]	AB245445
Galerina atkinsoniana [157598]	DQ440634
Tubaria sp. E8069 [341725]	DQ462517
Clitocybula atroalba [346642]	DQ437682
Mycena aff. pura PBM 2665 [378278]	DQ457646
Mycena plumbea [378280]	DQ457697
Panellus stypticus [5636]	U59090
Bensingtonia ciliata [4989]	D38233	a.I1
Bensingtonia thailandica [119489]	AB040116
	AB040117
	AB040114
	AB040115
Bensingtonia yamatoana [4996]	D38239	a.I1
	AF101826
Sporobolomyces diospyroris [251414]	AB126047
Sporobolomyces magnisporus [234794]	AB112078		misannotated as two introns
Sporobolomyces ruber [4986]	AB021686
Sporobolomyces sasicola [5444]	AB021688
Entyloma calendulae [84748]	DQ663688		missing 3' end of intron
Entyloma holwayi [63376]	DQ234562
Exobasidium gracile [190086]	DQ785786
Exobasidium rhododendri [63378]	DQ667152
Cintractia axicola [63370]	DQ631907		partial; terminates after P7'
Cintractia sorghi-vulgaris [293803]	DQ234548
Ustilago maydis [5270]	X62396	a.I1
uncultured rhizosphere basidiomycete [204868]	AY099406
	AY099407
	AY099408
	AY773741
cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Fungi incertae sedis » ...	Coemansia mojavensis [4864]	AB053169
cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » environmental samples » ...	uncultured fungus [175245]	AY168906
		AY168905
	uncultured soil fungus [167647]	AY382422
		AY382403
		AY382408
cellular organisms » Eukaryota » Rhizaria » Cercozoa » Plasmodiophorida » ...	Plasmodiophora brassicae [37360]	U18981
cellular organisms » Eukaryota » Rhizaria » Cercozoa » unclassified Cercozoa » ...	Nuclearia-like filose amoeba N-Por [135516]	AF289081
cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Dunaliella bardawil [3045]	AF150905
	Dunaliella parva [3048]	M62998	a.I1
	Dunaliella salina [3046]	UNP00875
		M84320	a.I1
		DQ447648
	Dictyochloris fragrans [179863]	AF367860
		AF367861
	Dictyochloris pulchra [179864]	AF367862
	Coelastrella multistriata [75801]	AB012846		missing 3'end of intron
	Coelastrella multistriata var. corcontica [113518]	AB037082
	Coelastrum astroideum [183310]	AF388380
	Desmodesmus pirkollei [165818]	AF348496
	Pseudodidymocystis planctonica [113526]	AB037087
	Scenedesmus producto-capitatus [42693]	X91266
	Scenedesmus pupukensis [42698]	X91267		was Kermatia pupukensis
	Scenedesmus sp. CCMP 1625 [155396]	AF339735
	Schroederiella apiculata [113536]	AB037098
	Scotiellopsis terrestris [75803]	AB012847
	Tetradesmus wisconsinensis [91193]	AB037097		synonym Scenedesmus wisconsinensis
	coccoid green alga JL 4-10 [221655]	AY195982
	Ankistrodesmus gracilis [81816]	AY846371
	Ankistrodesmus sp. NDem 9/21 T-6w [307508]	AY846374
	Kirchneriella aperta [117505]	AJ271859
	Monoraphidium contortum [307511]	AY846375
	Monoraphidium minutum [39955]	AY846380
	Monoraphidium saxatile [307517]	AY846384
	Monoraphidium terrestre [82352]	Y17817
	Quadrigula closterioides [82291]	Y17924
	Raphidocelis subcapitata [307507]	AY846381
	Selenastrum capricornutum [118073]	AF169628
	Schroederia setigera [132188]	AF277650
	Tetraedron minimum [302393]	AY663042
cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella sp. MBIC10043 [284942]	AB183579
	Chlorella sp. MBIC10747 [284944]	AB183635
	Koliella spiculiformis [154509]	AF278744
	Oocystis heteromucosa [120747]	AF228689
	Stichococcus bacillaris [37433]	AB055864
		AB055865
	Stichococcus sp. BCP-SRS2-14 [256022]	AY377441
	Stichococcus sp. MBIC10457 [284983]	AB183599
	'Chlorella' saccharophila [3082]	AB058301
		AB058300
		AB183575
		AB183576
		AB183578
		AB183577
	Choricystis minor [41300]	AY762605
	Choricystis sp. 1A1 [178341]	AF357147
cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ...	Urospora neglecta [264721]	AY476824
		AY476826
		AY476823
	Urospora sp. U122 [264719]	AY476820
	Urospora wormskioldii [264720]	AY476819
		AY476814
		AY476817
	Gloeotilopsis paucicellularis [43260]	Z47997		synonym Pleurastrum paucicellulare
	Gloeotilopsis planctonica [34157]	Z28970	a.I1
	Protoderma sarcinoidea [53263]	Z47998	a.I1
cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » Coscinodiscophyceae » ...	Leptocylindrus danicus [163516]	AY485501
956	N	cellular organisms » Eukaryota » Amoebozoa » Centramoebida » Acanthamoebidae » ...	Acanthamoeba lenticulata [29196]	U94739
				U94740
			Acanthamoeba sp. TUMSJ-341 [167752]	AF352391
1046	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Radiococcus polycoccus [170400]	AY044650		synonym Coenochloris polycocca
			Coelastrum pseudomicroporum [183313]	AF388381
			Neodesmus danubialis [113524]	AB037086
			Ankistrodesmus stipitatus [3109]	X56100	a.I1
			Kirchneriella aperta [117505]	AJ271859
			Monoraphidium minutum [39955]	AY846380
			Monoraphidium terrestre [82352]	Y17817
			Raphidocelis subcapitata [307507]	AY846381
			Selenastrum capricornutum [118073]	AF169628
		cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella sorokiniana [3076]	X73993	b.I1
			Botryococcus braunii [38881]	AJ581913
			Choricystis minor [41300]	AY762605
				AB109544
				X89012		was Nannochloris coccoides
			Choricystis sp. 1A1 [178341]	AF357147
			Choricystis sp. 4A3 [178343]	AF357149
			Choricystis sp. MDL5-9 [225408]	AY220082
			Choricystis sp. SAG 251-2 [72002]	X81965
		cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ...	Gloeotilopsis paucicellularis [43260]	Z47997		synonym Pleurastrum paucicellulare
			Trichosarcina polymorpha [348768]	AM087962
1052	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	'Chlorella' luteoviridis [31301]	X73998	a.I1	synonym Chlorella luteoviridis
1062	N	cellular organisms » Eukaryota » Amoebozoa » Mycetozoa » Myxogastria » ...	Fuligo septica [159720]	AJ584697		noted as 1065 in GB annotation
		cellular organisms » Eukaryota » Heterolobosea » unclassified Heterolobosea » Macropharyngomonas » ...	Macropharyngomonas halophila [63601]	AF011465
1139	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Pseudodidymocystis planctonica [113526]	AB037087		intron in variable region near E. coli position 1139
			Ankistrodesmus sp. NDem 9/21 T-6w [307508]	AY846374		intron in variable region near E. coli position 1139
			Selenastrum capricornutum [118073]	AF169628		intron in variable region near E. coli position 1139
		cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Amphikrikos cf. nanus Hegewald 1995-26 [120763]	AF228690		intron in variable region near E. coli position 1139; synonym Amphikrikos sp. Hegewald 1995-26
1199	N	cellular organisms » Eukaryota » Heterolobosea » unclassified Heterolobosea » Macropharyngomonas » ...	Macropharyngomonas halophila [63601]	AF011465
1367	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella sp. MRBG1 [335040]	AB219527
			uncultured Chlorella [254346]	AB206546
1389	N	cellular organisms » Eukaryota » Amoebozoa » Centramoebida » Acanthamoebidae » ...	Acanthamoeba sp. KA/MSG23 [217564]	AY176047
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Spizellomyces punctatus [109760]	AY546684
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Bensingtonia thailandica [119489]	AB040115
				AB040116
				AB040117
				AB040114
			Sporobolomyces magnisporus [234794]	AB112078
			Sporobolomyces bischofiae [112013]	AB035721
			Exobasidium gracile [190086]	DQ785786
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Fungi incertae sedis » ...	Zoophagus insidians [78907]	AB016009
1506	N	cellular organisms » Eukaryota » Alveolata » Ciliophora » Intramacronucleata » ...	Tokophrya lemnarum [168139]	AY332721
				AY332720
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pneumocystis carinii [4754]	X12708 X13687	a.I1
			Pneumocystis murina [263815]	AY532651
			Protomyces inouyei [27332]	D11377	a.I1
			Protomyces macrosporus [48147]	D85143	a.I1
			Protomyces pachydermus [48148]	D85142	a.I1
			Anguillospora rosea [253294]	AY357265
			Geniculifera cystosporia [47263]	U51966
			Kabatina juniperi [123900]	AY183367
			Kabatina thujae [64362]	AF462437
			Arthrobotrys cladodes [47294]	U51945
				U51952
			Arthrobotrys botryospora [47242]	U51955
			Arthrobotrys conoides [74498]	AF106534
			Arthrobotrys cylindrospora [47240]	AF106538		synonym Dactylella cylindrospora
				U51953
			Arthrobotrys polycephala [47239]	U51951
			Arthrobotrys superba [47237]	U51949
			Dactylella copepodii [47259]	U51964
			Dactylella gampsospora [47295]	U51960
			Dactylella huisuniana [47260]	U51965
			Drechslerella brochopaga [47238]	U51950	a.I1	synonym: Arthrobotrys brochopaga
			Monacrosporium asthenopagum [47258]	U51962		synonym Dactylella asthenopaga
			Monacrosporium bembicodes [47272]	U51976
			Monacrosporium leptosporum [97337]	AF106529
			Monacrosporium polybrochum [47261]	U51973		synonym Dactylella polybrocha
			Exophiala calicioides [135514]	AB007685		was Graphium calicioides
				AB007686		was Graphium calicioides
			Geosmithia viridis [106120]	AB033527
			Paecilomyces pascua [106128]	AB033528
			Penicillium argillaceum [103783]	AB033533
				AB033532
				AB033531
			Penicillium oblatum [106126]	AB033529
			Penicillium sabulosum [106127]	AB033530
			Venturia inaequalis [5025]	U63626		strain TR141
				U63625		strain RACE 4
				U63628		strain X94 01-2
				U63624		strain D94 07-1
				U63627		strain TR50
				AF065831		str. 685BF
			Elsinoe ampelina [302913]	AY826763		misannotated
				AY826764		misannotated
				AY826762		misannotated
			Leptosphaeria korrae [29836]	AF486626
			Cenococcum geophilum [5570]	Z48527
				Z48525
				Z48521
				Z48529
				Z11998
				Z48533	a.I1
				Z48536
				Z48526
				Z48534
				Z48537
			Pezicula cinnamomea [108560]	AF141184
				AF141185
			Bisporella citrina [155150]	AF335454
			Rhizoscyphus ericae [5183]	U06868		synonym Hymenoscyphus ericae
				AY394907		synonym Hymenoscyphus ericae
			Rhabdocline parkeri [66504]	AF462428
				AF462427
				AF462426
Sclerotinia trifoliorum [28548]	AY187069
	AY187072
	AY187076
Cadophora finlandica [62723]	AY394885
	AF486119		synonym Phialophora finlandia; 5' end of intron not present
	AJ534704		synonym Phialophora finlandia
Cadophora gregata f. sp. adzukicola [86000]	AF056487		P5c missing; synonym Phialophora gregata f. sp. adzukicola
Geomyces sp. C239/10G [242094]	AY345347
Geomyces sp. T489/9b [242096]	AY345348
Connersia rilstonii [95320]	AF281667
mitosporic fungus sp. JCM 8069 [118665]	AB038422		synonym anamorphic fungus sp. JCM 8069
Gnomoniella tubiformis [150558]	AF281671
glacial ice euascomycete GI307 [156710]	AF261659
Bourdotia sp. GEL5065 [282314]	DQ234545
Bensingtonia ciliata [4989]	D38233	a.I1
Bensingtonia thailandica [119489]	AB040114
	AB040116
	AB040115
	AB040117
Bensingtonia yamatoana [4996]	D38239	a.I1
Sporobolomyces magnisporus [234794]	AB112077		misannotated
Sporobolomyces bischofiae [112013]	AB035721
Sporobolomyces ogasawarensis [111310]	AB035714
	AB035715
	AB035713
	AB035712
	AB035716
	AB035717
	AB035718
	AB035719
Colacogloea peniophorae [5233]	DQ234565
Tilletiopsis oryzicola [132575]	AB045705
Tilletiopsis flava [58914]	D82819
	AB045703
cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » environmental samples » ...	uncultured fungus [175245]	AM260809
		AM260926
		AM260846
cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » unclassified Fungi » ...	mycorrhizal fungal sp. pkc15 [249038]	AY394887
cellular organisms » Eukaryota » Rhizaria » Cercozoa » Cercomonadida » ...	Heteromita sp. PRA-74 [323453]	AY905499
cellular organisms » Eukaryota » Rhizaria » Cercozoa » Plasmodiophorida » ...	Plasmodiophora brassicae [37360]	U18981
cellular organisms » Eukaryota » Rhodophyta » Bangiophyceae » Bangiales » ...	Bangia atropurpurea [31347]	L36066
		D88387
	Bangia fuscopurpurea [101920]	AF172590		California/CA; exon sequence from AF043356
		AF172591		Victoria/BC2; exon sequence from AF043359
		AF172593		Ireland/IR; exon sequence from AF175534
		AF172594		Nova Scotia/NS; exon sequence from AF169337
		AF172592		Newfoundland/NF; exon sequence from AF043357
		AF172584		France: Nice; exon sequence from AF175535
		AF172586		North Carolina/NC; exon sequence from AF043363
		AF342745
		AF172582		Mexico/MEX; exon sequence from AF169334
		AF172583		New Jersey/NJ; exon sequence from AF169335
		AF172587		Greece/GR; exon sequence from AF175533
		AF172585		Germany: Helgoland/HL; exon sequence from AF175532
		AF172589		Oregon/OR; exon sequence from AF043358
	Porphyra capensis [298899]	AY766361
	Porphyra cinnamomea [199484]	AF136419
	Porphyra dentata [76160]	AB013183
	Porphyra drewiana [298898]	AY766362
	Porphyra fucicola [144551]	AF172595
	Porphyra haitanensis [76159]	AB013181
	Porphyra katadae [76161]	AB013184
	Porphyra leucosticta [35146]	AF172598		exon sequence from AF175557
	Porphyra pseudolanceolata [139731]	AF172599		exon sequence from AF175543
	Porphyra pseudolinearis [81939]	AB013185
	Porphyra purpurea [2787]	AF172588		exon sequence from AF175551
	Porphyra rakiura [199481]	AF136425
	Porphyra rediviva [139732]	AF172600		exon sequence from AF175544
	Porphyra sp. [2790]	AB013182
		AF136422
		AF136420
		AB017077
	Porphyra spiralis [31350]	L26176	a.I1
		L26175	a.I1
		L26177	a.I1
	Porphyra suborbiculata [76158]	AF378659		synonym Porphyra lilliputiana
		AF378651		synonym Porphyra lilliputiana
		AF378650		synonym Porphyra lilliputiana
		AF378649		synonym Porphyra lilliputiana
		AF378654		synonym Porphyra carolinensis
		AF378653		synonym Porphyra carolinensis
		AF136424		synonym Porphyra lilliputiana
		AF378658		synonym Porphyra lilliputiana
		AF378660		synonym Porphyra lilliputiana
		AF378661		synonym Porphyra lilliputiana
		AF378662		synonym Porphyra lilliputiana
		AF378663		synonym Porphyra lilliputiana
		AF378664		synonym Porphyra lilliputiana
		AF378665		synonym Porphyra lilliputiana
		AF378652
	Porphyra tenera [2785]	AB029880
		AB013175
		AB029879
		AB100959
		AB013176
		AB029882
		AB029881
		AB100958
		AB029883
		AB101442
		AB029884
	Porphyra umbilicalis [2786]	AY347910
		AF172602		Germany: Hallig Grode; exon sequence from AF175549
		AY347906
AY347902
AY347908
AY347903
AY347904
AY347905
AY347909
Porphyra virididentata [199482]	AF136421
Porphyra yezoensis [2788]	AB017078
	AB013178
	AB017083
	AB017075
	AB017076
	AB017081
Porphyra sp. Baleia [298901]	AY766358
Porphyra sp. Brest [144553]	AF172601		exon sequence from AF175548
Porphyra sp. Marseille [144552]	AF172597		exon sequence from AF175546
cellular organisms » Eukaryota » Rhodophyta » Florideophyceae » Hildenbrandiales » ...	Hildenbrandia rubra [31481]	AY571898
		AY571899
		L19345	b.I1
		AF076995
		AY571895
		AY571897
		AY571894
		AY571896
cellular organisms » Eukaryota » Rhodophyta » Rhodellophyceae » Rhodellales » ...	Rhodella sp. MBIC10593 [284791]	AB183619
cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Koliella sempervirens [154508]	AF278743
	Stichococcus bacillaris [37433]	AB055865
		AB055864
		AB055866
	Stichococcus sp. MBIC10457 [284983]	AB183599
	Stichococcus sp. MBIC10465 [284984]	AB183601
	Stichococcus sp. NB2VFF10 [202781]	AF513370		no 3' exon sequence
	'Chlorella' mirabilis [3083]	X74000	a.I1	synonym Chlorella mirabilis
cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Zygnemophyceae » ...	Closterium acerosum [130971]	AF352230
	Closterium calosporum var. calosporum [157568]	AF352225
	Closterium calosporum var. galiciense [157574]	AF352239
	Closterium calosporum var. himalayense [157570]	AF352229
	Closterium ehrenbergii [102165]	AY148847
		AY148833
		AY148814
		AY148832
		AY148831
		AY148842
		AY148843
		AY148821
		AY148820
		AY148819
		AY148818
		AF115437
		AY148851
		AY148850
		AY148849
		AY148848
		AY148810
		AF352228
		AY148813
		AY148815
		AY148838
		AY148857
		AY148856
		AY148855
		AY148854
		AY148853
		AY148837
		AY148852
		AY148829
		AY148863
		AY148830
		AY148828
		AY148827
		AY148845
		AY148836
		AY148835
		AY148834
		AY148864
		AY148844
		AY148841
		AY148826
		AY148825
		AY148824
		AY148823
		AY148822
		AY148808
		AY148846
		AY148809
		AY148839
		AY148840
		AY148858
		AY148859
		AY148860
		AY148861
		AY148862
		AY148811
		AY148812
		AY148816
		AY148817
	Closterium gracile [157577]	AF352237
Closterium incurvum [157578]	AF352231
Closterium littorale [102166]	AF115438		P3 dosn't match P3'
Closterium moniliferum var. moniliferum [157564]	AY148875
	AY148874
	AF352233
	AF352223
	AY148876
	AY148873
	AF352222
Closterium moniliferum var. submoniliferum [157563]	AY148870
	AY148867
	AY148866
	AY148869
	AY148871
	AY148868
	AY148865
	AF352221
	AY148872
Closterium navicula [157579]	AF352232
Closterium sp. NIES-52 [157561]	AF352226
Closterium pleurodermatum [157580]	AF352238
Closterium pusillum var. maius [157573]	AF352235
Closterium selenastrum [157581]	AF352242
Closterium spinosporum var. crassum [157576]	AF352241
Closterium spinosporum var. malaysiense [157569]	AF352227
Closterium spinosporum var. ryukyuense [157575]	AF352240
Closterium spinosporum var. spinosporum [157566]	AF352224
Closterium tumidum [157571]	AF352234
Closterium venus [157582]	AF352236
Closterium wallichii [157583]	AF352243
Cosmarium botrytis [33101]	X77453	a.I1
Cosmocladium saxonicum [35865]	X79497	a.I1
Sphaerozosma granulatum [35867]	X79496	a.I1
Staurastrum punctulatum [102822]	AF115442		P5b cannot be aligned well
Staurastrum sp. M752 [31318]	X74752	a.I1
Staurastrum sp. M753 [76048]	X77452	a.I1
Genicularia spirotaenia [31316]	X74753	a.I1
Gonatozygon aculeatum [45763]	X91346
Penium margaritaceum [102169]	AF115440
Cylindrocystis brebissonii [102167]	AF115439
Mesotaenium caldariorum [31321]	X75763	a.I1
Mougeotia scalaris [13158]	X70705	a.I1
Sirogonium sticticum [102164]	AF115441
Zygnema circumcarinatum [35869]	X79495	a.I1	synonym Zygnemopsis circumcarinata
cellular organisms » Eukaryota » environmental samples » uncultured eukaryote » ...	uncultured eukaryote [100272]	AY082986
		AY082973
		AY082975
1507	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Meliniomyces variabilis [313359]	AY838789
				AY838785
			Phialocephala fortinii [62722]	AY078135		incomplete 5' end
				AY078139		incomplete 5' end
				AY524846
			Phialocephala sphaeroides [271845]	AY524844
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » environmental samples » ...	uncultured fungus [175245]	AM260808
				AM260929
				AM260920
				AM260810
1511	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Talaromyces wortmannii [28567]	AY157634
			Penicillium ochrochloron [69780]	AF178516
			Penicillium pulvillorum [104261]	AF178526
				AF178527
				AF178517
1512	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Geosmithia argillacea [69808]	AB012951		str. IAM14726
				AB013734		str. IFO 31128
		cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Lobochlamys segnis [52035]	AJ410456		synonym Chlamydomonas segnis
			Dunaliella bardawil [3045]	AF150905
			Dunaliella parva [3048]	M62998	a.I1
			Characium saccatum [3094]	M84319	a.I1
			Dictyochloris fragrans [179863]	AF367860
			Dictyochloris pulchra [179864]	AF367862
			Coelastrum pseudomicroporum [183313]	AF388381
			Monoraphidium terrestre [82352]	Y17817
			Selenastrum capricornutum [118073]	AF169628
			Botryococcus sp. UTEX 2629 [244724]	AJ581914
		cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella sp. MRBG1 [335040]	AB219527
			Trebouxia arboricola [53268]	AJ969530
				AJ969552
				AJ969581
				AJ969519
				AJ969518
				AJ969609
				AJ969560
				Z68705
				AJ969512
				AJ969528
				AJ969520
				AJ969509
				AJ969565
				AJ249481
				AJ969526
				AJ249564
				AJ249482
				Z68704
			Trebouxia corticola [103875]	AJ249566
			Trebouxia decolorans [300845]	AJ969539
				AJ970889
				AM159503		unannotated
				AJ969603
				AJ969600
				AJ969599
				AJ969595
				AJ969556
				AM159210
				AJ969572
				AJ969554
				AJ969569
			Trebouxia galapagensis [103876]	AJ249567
			Trebouxia gelatinosa [53269]	AJ249568
				Z68698		str. GRB108
				AJ249569
			Trebouxia higginsiae [103877]	AJ249574		3' end not clear
			Trebouxia impressa [13788]	AJ249570
			Trebouxia jamesii [53267]	Z68700
				Z68699
				AJ249571
			Trebouxia sp. 98.003B2 [103872]	AJ249572
			Trebouxia usneae [53266]	AJ249573
				Z68702
			uncultured Trebouxia photobiont [285713]	AJ969580
				AJ969513
				AJ969523
				AJ969514
			Choricystis minor [41300]	X89012		was Nannochloris coccoides
				AB109544
			Choricystis sp. 1A1 [178341]	AF357155
			Coccomyxa pringsheimii [312852]	AY762603
uncultured Chlorella [254346]	AB206546
cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ...	Urospora neglecta [264721]	AY476822
		AY476821
	Urospora penicilliformis [138169]			LIT: Mol. Biol. Evol. 10(6):1317-1326 (1993).
	Urospora sp. AB58 [264717]	AY476812
	Urospora sp. U122 [264719]	AY476820
	Urospora sp. UP52 [264718]	AY476813
	Urospora wormskioldii [264720]	AY476819
		AY476818
		AY476817
		AY476816
		AY476815
	Gloeotilopsis paucicellularis [43260]	Z47997		synonym Pleurastrum paucicellulare
	Protoderma sarcinoidea [53263]	Z47998
IC2	569	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cordyceps kanzashiana [94210]	AB027347
				Cordyceps sp. 97003 [94217]	AB027352
	570	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Sclerotinia sclerotiorum [5180]	U07553	a.I1
	1210	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cryphonectria parasitica [5116]	AF029891		ORF's 5' isn't correct
	1224	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Agrocybe aegerita [5400]	U54637	a.I1
IE	TBD	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Exophiala prototropha [86340]	X91901		synonym Pullularia prototropha
					X91899		synonym Pullularia prototropha
				Neonectria galligena [56674]	Y16424		synonym Nectria galligena
					Y16422		synonym Nectria galligena
					Y16423		3' end uncertain; synonym Nectria galligena
				Graphiola phoenicis [5276]	AB000962
					D63930		IP possible 516
	516	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Leptodontidium quercuum [75376]	AF056375
				Capronia pilosella [45095]	AY316152
				Exophiala dermatitidis [5970]	Z75303
				Caliciopsis pinea [152644]	AF242260
				Byssochlamys zollerniae [89138]	AY526485
				Trichocoma paradoxa [76771]	AB003943
					AB003944
				Geosmithia viridis [106120]	AB033527
				Penicillium argillaceum [103783]	AB033531
					AB033533
					AB033532
				Penicillium oblatum [106126]	AB033529
				Sagenomella diversispora [89792]	AB024588
					AB024589
				Mycocalicium albonigrum [39942]	L37736
				Geoglossum nigritum [107442]	AY544694
				Pannaria conoplea [191109]	AY424260
				Psoroma hypnorum [191118]	AY424261		misannotated
				Lobaria pulmonaria [86794]	AF183935
				Nephroma arcticum [48859]	AY424262		misannotated
				Massalongia carnosa [161978]	AY424265		misannotated
				Coenogonium luteum [146297]	AF279386		synonym Dimerella lutea
				Hymenelia epulotica [146300]	AF279393
				Peltula umbilicata [169193]	DQ782887		misannotated
					AF356688		unannotated
				Arthonia dispersa [242232]	AY571379
				Lecanactis abietina [40113]	AY548805
				Roccella boergesenii [279123]	AY548807
				Roccella canariensis [72318]	AF110343
					AF110345
					AF110344
					AF110342
				Roccella fimbriata [91945]	AF110339
				Roccella tuberculata [91947]	AF110351
					AF110350
				Acrospermum compressum [152639]	AF242257
				Delitschia didyma [152651]	AF242264
				Rhizoscyphus ericae [5183]	AF462168		synonym Hymenoscyphus ericae
					AY762620
				Rhexocercosporidium sp. DSE48.1b [301706]	AJ864396
				leotiomycete sp. G21-24-A14 [220855]	AY190279
				leotiomycete sp. G21-24-A201 [220856]	AY190274
				leotiomycete sp. G21-24-A204 [220857]	AY190275
				leotiomycete sp. G21-24-KI129 [220858]	AY190276
				leotiomycete sp. G21-24-PU162 [220859]	AY190277
				leotiomycete sp. G21-24-RU19 [220860]	AY190278
				Mycoarachis inversa [29864]	AB012953		str. IAM 14639
					AB013735		str. ATCC 22107
				Cordyceps kanzashiana [94210]	AB027325
				Cordyceps prolifica [94209]	AB027324
				Cordyceps ramosopulvinata [94211]	AB027326
				Cordyceps sp. 97003 [94217]	AB027329
				Bulbithecium hyalosporum [95318]	AF096172
				Hirsutella rhossiliensis [111463]	AB109760
				Barrmaelia oxyacanthae [101485]	AF064048
				Daldinia sp. F16 [246476]	AY315425
				Xylaria sp. F23 [246502]	AY315427
Xylariales sp. F15 [246511]				AY315424
Xylariales sp. F17 [246512]				AY315426
Sakaguchia dacryoidea [106023]				D13459		was Rhodosporidium dacryoidum
Ustilentyloma fluitans [63397]				AY124481
Colacogloea peniophorae [5233]				DQ234564
Entyloma calendulae [84748]				DQ663688
Entyloma holwayi [63376]				DQ234562
Exobasidium gracile [190086]	DQ785786
Tilletiopsis flava [58914]	AB045703
	D82819
Cintractia axicola [63370]	DQ631907
cellular organisms » Eukaryota » Rhizaria » Cercozoa » Plasmodiophorida » ...	Plasmodiophora brassicae [37360]	U18981
cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Mychonastes sp. 5C5 [178348]	AF357153
	Pseudomuriella aurantiaca [42696]	X91268		misspelling Muriella aurantica
		AB005748		misspelling Muriella aurantica
	Radiococcus polycoccus [170400]	AY044650		synonym Coenochloris polycocca
		AY044649		synonym Coenochloris polycocca
	Coelastrella multistriata [75801]	AB012846		missing 3' end of intron -- only 50% complete
	Coelastrella multistriata var. corcontica [113518]	AB037082
	Coelastrum pseudomicroporum [183313]	AF388381
	Hariotina reticulata [183314]	AF388382		synonym Coelastrum reticulatum
	Pseudodidymocystis planctonica [113526]	AB037087
	Scenedesmus sp. CCMP 1625 [155396]	AF339735
	Kirchneriella aperta [117505]	AJ271859
	Monoraphidium contortum [307511]	AY846375
	Monoraphidium terrestre [82352]	Y17817
	Podohedriella falcata [52960]	X97352		synonym Ankistrodesmus falcatus
	Quadrigula closterioides [82291]	Y17924
	Tetraedron minimum [302393]	AY663042
	Botryococcus sp. UTEX 2629 [244724]	AJ581914
	Bracteacoccus sp. BC2-1 [209073]	AF516676
cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella pyrenoidosa [3078]	AB240151
	Chlorella sp. 2A3 [178344]	AF357146
	Chlorella sp. MBIC10744 [284943]	AB183634
	Koliella spiculiformis [154509]	AF278744
	Amphikrikos cf. nanus Hegewald 1995-26 [120763]	AF228690		synonym Amphikrikos sp. Hegewald 1995-26
	Stichococcus bacillaris [37433]	AB055864
	Stichococcus sp. MBIC10457 [284983]	AB183599
	Trebouxia arboricola [53268]	Z68705
	Trebouxia usneae [53266]	Z68702
	Actinastrum hantzschii [55402]	AF288365
	'Chlorella' luteoviridis [31301]	X73997		synonym Chlorella luteoviridis
		X73998		synonym Chlorella luteoviridis
	'Chlorella' saccharophila [3082]	AB058310
		X73991		synonym Chlorella saccharophila
	Chlorella sp. BC4-VF9 [209072]	AF516675
	Coccomyxa pringsheimii [312852]	AY762603
	Neochloris aquatica [3099]	UNP00779		Louise Lewis. J.Phycol. 28:375 (1992).
cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Klebsormidiophyceae » ...	Klebsormidium flaccidum [3175]	X75520
	Klebsormidium nitens [105231]	AF408242		misannotated
		AJ250112
	Klebsormidium subtilissimum [184584]	AF408241		misannotated
568	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Scotiellopsis oocystiformis [75804]	AB012848		missing P8' to 3' end of int.
651	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella sp. AN 1-3 [221618]	AY195964		intron in variable region near E. coli position 651
			uncultured Chlorella [254346]	AB206548		intron in variable region near E. coli position 651
				AB206547		intron in variable region near E. coli position 651
943	N	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella sp. MRBG1 [335040]	AB219527
			uncultured Chlorella [254346]	AB206546
956	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Spizellomyces kniepii [109892]	AF164238		no 5' exon; missing 5' end of intron
989	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Exophiala nigra [52866]	X91897	b.I1	was Nadsoniella nigra
				X80707		was Nadsoniella nigra
			Paecilomyces sp. 97014 [130800]	AB044633
			Trichoglossum hirsutum [265104]	AY544697
			Conotrema populorum [56759]	U86582
			Acrospermum compressum [152639]	AF242257
			Rhexocercosporidium sp. DSE48.1b [301706]	AJ864396
			leotiomycete sp. G21-24-KI129 [220858]	AY190276
			leotiomycete sp. G21-24-PU162 [220859]	AY190277
			Cordyceps kanzashiana [94210]	AB027325
			Cordyceps prolifica [94209]	AB027324
			Cordyceps ramosopulvinata [94211]	AB027326
			Cordyceps sp. 97003 [94217]	AB027329
			Melanopsamma pomiformis [80381]	AY489677
			Thyridium vestitum [265083]	AY544715
			Cryptendoxyla hypophloia [64883]	AF015912	b.I1
			Rosellinia necatrix [77044]	AB014044
			Xylaria polymorpha [77046]	AB014043
			Exobasidium gracile [190086]	DQ785786
		cellular organisms » Eukaryota » Rhodophyta » Florideophyceae » Hildenbrandiales » ...	Hildenbrandia rubra [31481]	AY571893
1199	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Karlingiomyces sp. JEL93 [110075]	AF164278 AF164279 AF164280
			Oedogoniomyces sp. CR84 [252682]	AY635839
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Exophiala calicioides [135514]	AB007686		was Graphium calicioides
				AB007685		was Graphium calicioides
			Paecilomyces pascua [106128]	AB033528
			Penicillium oblatum [106126]	AB033529
			Penicillium radicum [228353]	AY256855
			Penicillium sabulosum [106127]	AB033530
			Cladonia merochlorophaea [5200]	Z14025		Formerly Cladonia merochlorophaea Asah
			Ochrolechia parella [129506]	AF274109
			Roccella boergesenii [279123]	AY548807
			Hysteropatella clavispora [100029]	AY541483
			Dendryphiopsis atra [85923]	AF053731
			Lewia infectoria [45303]	AY154692
				AY154690
				AY154688
			Sclerotinia trifoliorum [28548]	AY187075
			leotiomycete sp. G21-24-A201 [220856]	AY190274
			leotiomycete sp. G21-24-A204 [220857]	AY190275
			leotiomycete sp. G21-24-PU162 [220859]	AY190277
			leotiomycete sp. G21-24-RU19 [220860]	AY190278
			Bionectria ochroleuca [29856]	AB012952		synonym Nectria ochroleuca
				AB013010		synonyms Nectria aureofulva, Bionectria aureofulva
			Hydropisphaera erubescens [110568]	AY545722
			Claviceps africana [83212]	AF281176
			Claviceps panicoidearum [379502]	AB255605		unannotated
				AB255604		unannotated
			Claviceps sorghicola [83213]	AF281177
			Epichloe typhina [5113]	AB105952
				AB105953
			Metarhizium flavoviride var. minus [92631]	AF280632
			Neotyphodium uncinatum [5050]	AB102783
			Paecilomyces cicadae [181121]	AB085886
				AB085887
				AB085888
				AB086630
				AB086631
			Tolypocladium inflatum [29910]	AB044634
				AB255606		unannotated
				AY245674
			Cordyceps bassiana [176275]	AB237657
				AB079609		GenBank anamorph Beauveria bassiana
				AB079125		GenBank anamorph Beauveria bassiana
			Cordyceps brongniartii [118266]	AB258368
				AB106649
				AB027335
				AB237658		unannotated
				AB258367
			Cordyceps cardinalis [224370]	AB237660		unannotated
			Cordyceps kanzashiana [94210]	AB027325
			Cordyceps kyushuensis [259534]	AY465958
			Cordyceps militaris [73501]	AB070373
				AB233336
				AB027333
				AF327392
				AB070374
				AB070375
				AB084156
			Cordyceps prolifica [94209]	AB027324
			Cordyceps pruinosa [129524]	AB044629
			Cordyceps ramosopulvinata [94211]	AB027326
			Cordyceps sp. 97005 [130799]	AB044630
			Cordyceps sp. 97009 [94216]	AB027332
			Cordyceps sp. BCMU CN03 [343855]	AB233335
Cordyceps takaomontana [131074]	AB044631
Torrubiella flava [219582]	AB100609
Bulbithecium hyalosporum [95318]	AF281666
Fusarium phaseoli [120645]	AF150481		GenBank synonym Fusarium solani f. sp. phaseoli
	AF150483		GenBank synonym Fusarium solani f. sp. phaseoli
Fusarium solani f. batatas [121868]	AF150484
Fusarium solani f. robiniae [121877]	AF150489
	AF150490
Fusarium solani f. xanthoxyli [121863]	AF150491
	AF150492
Verticillium fungicola var. flavidum [170723]	AB112030
Natantispora retorquens [85911]	AF352086		unannotated; synonym Halosarpheia retorquens
Graphium basitruncatum [118975]	AB038421
Graphium penicillioides [67620]	AB007682
Gondwanamyces proteae [5156]	AY271804
Papulosa amerospora [101488]	AF064050
Chaetosphaeria curvispora [260530]	AY502933
Menispora tortuosa [139972]	AY544723
Cryphonectria parasitica [5116]	L42441	a.I1
Cryphonectria radicalis [40262]	L42442
Apioplagiostoma aceriferum [148325]	AF281665
Leucostoma cinctum [105485]	AF191168
Cryptendoxyla hypophloia [64883]	AF281670
Xylaria polymorpha [77046]	AB014043
Xylariales sp. F15 [246511]	AY315424
Xylariales sp. F17 [246512]	AY315426
Bensingtonia sakaguchii [109612]	AB001747
	AB001746
Bensingtonia thailandica [119489]	AB040115
	AB040114
	AB040117
	AB040116
Sporobolomyces taupoensis [69980]	D66886
Microbotryum violaceum [5272]	DQ789983
Tilletiopsis oryzicola [132575]	AB045705
Exobasidium gracile [190086]	DQ785786
Tilletiopsis flava [58914]	D82819
	AB045703
Cintractia sorghi-vulgaris [293803]	DQ234548
1201	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Geosmithia viridis [106120]	AB033527		aligns well with 1199 IE introns -- error in GenBank entry?