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Table 2B: Number of rRNA Introns, Intron Position, and Phylogenetic Group for Intron Type IA3

Structure File Format:PS  PDF  BPSEQ 

EX	RC	IP	L	Phylogeny	Organism [TaxID]	Accession	Structure	Comment
16S	IA3	508	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Lobochlamys segnis [52035]	L39865		synonym Chlamydomonas pallidostigmatica
				cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Closteriopsis acicularis [82138]	Y17632		was Chlorella acicularis
				cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ...	Caulerpa sertularioides [76315]	AY389514
		531	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas moewusii [3054]	X15850
		793	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Stigeoclonium helveticum [55999]	DQ630521
					Lobochlamys segnis [52035]	L39865		synonym Chlamydomonas pallidostigmatica
				cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ...	Caulerpa sertularioides [76315]	AY389514
			M	cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara sp. Qiu 96222 [81819]	AF191800		incorrect annotation
					Chara vulgaris [55564]	AY267353
					Takakia lepidozioides [37425]	AF058672
					Sphagnum palustre [13805]	AF058671
					Polytrichum commune [3213]	AF244564
					Isoetes histrix [50297]	AF058669
23S	IA3	580	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Agrocybe aegerita [5400]	AF087656
		730	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Stigeoclonium helveticum [55999]	L49157
					Haematococcus lacustris [107616]	L49151
		779	M	cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara vulgaris [55564]	AY267353
		1951	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlorosarcina brevispinosa [163096]	L49150
				cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ...	Monomastix sp. M722 [141717]	L44124
					Monomastix sp. OKE-1 [141716]	L49154		synonym Monomastix sp. CL-1997
			M	cellular organisms » Eukaryota » Amoebozoa » Centramoebida » Acanthamoebidae » ...	Acanthamoeba castellanii [5755]	U12386
						U03732
				cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella vulgaris [3077]	AY008338		IP noted by authors in manuscript
			N	cellular organisms » Bacteria » Proteobacteria » Gammaproteobacteria » Legionellales » ...	Coxiella burnetii [777]	EF632073
					Coxiella burnetii CbuG_Q212 [434923]	CP001019
					Coxiella burnetii CbuK_Q154 [434924]	CP001020
					Coxiella burnetii RSA 493 [227377]	AE016828
						AE016960
		2500	M	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ...	Nephroselmis olivacea [31312]	AF110138
		2533	M	cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Chara vulgaris [55564]	AY267353
		2593	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Carteria lunzensis [160071]	L42986
					Carteria olivieri [52037]	L43500
					Chlamydomonas agloeformis [160058]	L43351
					Chlamydomonas callosa [51692]	L43501
					Chlamydomonas mexicana [28460]	L49148
					Chlamydomonas nivalis [47906]	L42990
					Chlamydomonas peterfii [28462]	L43538
					Chlamydomonas reinhardtii [3055]	FJ423446
						FJ423446
						X01977
					Haematococcus lacustris [107616]	L49151
					Scenedesmus obliquus [3088]	L43360
				cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyta incertae sedis » ...	Oltmannsiellopsis viridis [51324]	DQ291132
						DQ291132
				cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ...	Scherffelia dubia [3190]	AF393609
						L44126
					Monomastix sp. M722 [141717]	L44124
					Monomastix sp. OKE-1 [141716]	L49154		synonym Monomastix sp. CL-1997
				cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Chlorella vulgaris [3077]	AB001684
						L43357
					Neochloris aquatica [3099]	L49155
				cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Ulvophyceae » ...	Trichosarcina mucosa [141643]	AY008341
					Pseudendoclonium akinetum [160070]	AY835431		replaces L44125
						AY835431		replaces L44125
				cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Anthoceros formosae [48387]	AB086179
						AB073981
					Anthoceros punctatus [3234]	AF393576
			M	cellular organisms » Eukaryota » Amoebozoa » Centramoebida » Acanthamoebidae » ...	Acanthamoeba castellanii [5755]	U12386
						U03732
				cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Prasinophyceae » ...	Nephroselmis olivacea [31312]	AF110138
				cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Mesostigmatophyceae » ...	Mesostigma viride [41882]	AF353999
		2596	C	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Chlamydomonas monadina [47904]	L49149
					Lobochlamys segnis [52035]	L43503		synonym Chlamydomonas pallidostigmatica
					Chlorococcum echinozygotum [48000]	L44123
					Chlorosarcina brevispinosa [163096]	L49150
					Oedogonium cardiacum [55995]	EU677193
						EU677193
				cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Trebouxiophyceae » ...	Trebouxia aggregata [160068]	L43542

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