Comparative RNA Web Site and Project The Gutell Lab

Table 2B: Number of rRNA Introns, Intron Position, and Phylogenetic Group for Intron Type IIB

Structure File Format:PS  PDF  BPSEQ 

EX	RC	IP	L	Phylogeny	Organism [TaxID]	Accession	Structure	Comment
16S	IIB	788	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi/Metazoa incertae sedis » Ichthyosporea » ...	Amoebidium parasiticum [4881]	AF538044
				cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cryphonectria parasitica [5116]	AF029891
					Ganoderma lucidum [5315]	AF214475
					Lentaria byssiseda [104232]	AF185983
		952	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Paracoccidioides brasiliensis [121759]	AY955840
					Cordyceps ramosopulvinata [94211]	AB027348
					Cordyceps sp. 97009 [94216]	AB027356
					Cryphonectria parasitica [5116]	AF029891	a.I2
		967	M	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Scenedesmus obliquus [3088]	AF204057
						AJ277428
						X17375
23S	IIB	575	M	cellular organisms » Eukaryota » stramenopiles » PX clade » Phaeophyceae » ...	Pylaiella littoralis [2885]	AJ277126
						Z48620	a.I2
		787	M	cellular organisms » Eukaryota » Viridiplantae » Streptophyta » Streptophytina » ...	Marchantia polymorpha [3197]	M68929
		1787	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Metazoa » Placozoa » ...	Placozoan sp. BZ10101 [401703]	DQ889456
				cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Pedinophyceae » ...	Pedinomonas minor [3159]	AF116775
				cellular organisms » Eukaryota » stramenopiles » PX clade » Phaeophyceae » ...	Pylaiella littoralis [2885]	Z48620	a.I2
						AJ277126
		2059	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Blastocladiomycota » ...	Allomyces macrogynus [28583]	U41288
				cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Chytridiomycota » ...	Rhizophydium sp. 136 [60187]	AF404306
				cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Agrocybe aegerita [5400]	AF087656	a.I2
					Suillus luteus [5384]	L47586
		2449	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi/Metazoa incertae sedis » Ichthyosporea » ...	Amoebidium parasiticum [4881]	AF538042
		2451	M	cellular organisms » Eukaryota » stramenopiles » PX clade » Phaeophyceae » ...	Pylaiella littoralis [2885]	Z48620	a.I2
						AJ277126
		2455	M	cellular organisms » Eukaryota » Viridiplantae » Chlorophyta » Chlorophyceae » ...	Scenedesmus obliquus [3088]	X17375	a.I2
						AF204057
		2509	M	cellular organisms » Eukaryota » Rhodophyta » Bangiophyceae » Bangiales » ...	Porphyra purpurea [2787]	AF114794
				cellular organisms » Eukaryota » stramenopiles » PX clade » Phaeophyceae » ...	Pylaiella littoralis [2885]	Z48620	a.I2
						AJ277126
		2584	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Candida stellata [45594]	AY445918
		2586	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Metazoa » Placozoa » ...	Trichoplax adhaerens [10228]	DQ112541
					Placozoan sp. BZ10101 [401703]	DQ889456
					Placozoan sp. BZ2423 [401705]	DQ889458
		2610	M	cellular organisms » Eukaryota » Rhodophyta » Bangiophyceae » Bangiales » ...	Porphyra purpurea [2787]	AF114794

---

CRW Site: Site Overview | Site Map | Help/Questions/Comments | Technical Information and Assistance
U. of Texas: UT Home | CCBB | IB | CNS | ICES | ICMB