Table 2B: Number of rRNA Introns, Intron Position, and Phylogenetic Group for Intron Type Unknown

EX	RC	IP	L	Phylogeny	Organism [TaxID]	Accession	Comment
16S	U	162	N	cellular organisms » Archaea » environmental samples » uncultured archaeon » ...	uncultured archaeon [115547]	AB109884	Archaeal
		162	N		uncultured archaeon [115547]	AB109879	Archaeal
		263	N	cellular organisms » Archaea » environmental samples » uncultured archaeon SAGMA-B » ...	uncultured archaeon SAGMA-B [140246]	AB050206	Archaeal
		265	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Agonimia sp. AFTOL 684 [395001]	DQ782885	spliceosomal
					Arthrorhaphis citrinella [146290]	AF279375	spliceosomal
					Parmotrema tinctorum [235862]	AY584659	spliceosomal
					Hyperphyscia adglutinata [116796]	AJ549803	spliceosomal
					Bacidia schweinitzii [161808]	DQ782884	spliceosomal
					Hymenelia epulotica [146300]	AF279393	spliceosomal
					Hymenelia lacustris [196135]	AY640992	spliceosomal
		297	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Biatoridium monasteriense [286569]	AY640988	spliceosomal
					Calicium adspersum [57086]	AF242261	spliceosomal
					Physconia detersa [114785]	AJ240485	spliceosomal
					Physconia distorta [114786]	AJ240484	spliceosomal
					Physconia enteroxantha [114787]	AJ240486	spliceosomal
					Letrouitia domingensis [157776]	AY584672	spliceosomal
		298	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Physconia elegantula [114788]	AJ240487	spliceosomal
					Physconia perisidiosa [114789]	AJ240488	spliceosomal
					Teloschistes exilis [271840]	AY584671	spliceosomal
		299	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Glomerobolus gelineus [75749]	DQ247811	spliceosomal
					Rhynchostoma minutum [152654]	AF254663	spliceosomal
					Rhynchostoma minutum [152654]	AF242269	spliceosomal
					Lopezaria versicolor [271828]	AY584675	spliceosomal
					Parmotrema tinctorum [235862]	AY584659	spliceosomal
					Physcia undulata [221732]	AJ549806	spliceosomal
					Bacidia schweinitzii [161808]	DQ782884	spliceosomal
					Psoroma hypnorum [191118]	AY424261	spliceosomal
					Roccella boergesenii [279123]	AY548807	spliceosomal
					Roccella canariensis [72318]	AF110344	spliceosomal
						AF110342	spliceosomal
						AF110343	spliceosomal
						AF110345	spliceosomal
					Roccella tuberculata [91947]	AF110351	spliceosomal
						AF110350	spliceosomal
						AF110348	spliceosomal
						AF110346	spliceosomal
						AF110347	spliceosomal
		300	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Rhynchostoma minutum [152654]	AF242268	spliceosomal
		300	N		Hyperphyscia adglutinata [116796]	AJ549803	spliceosomal
		322	N	cellular organisms » Archaea » environmental samples » uncultured archaeon SAGMA-17 » ...	uncultured archaeon SAGMA-17 [140287]	AB050247	Archaeal
		330	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Glomerobolus gelineus [75749]	DQ247811	spliceosomal
					Berlesiella nigerrima [86046]	AY541478	spliceosomal
					Cladonia bellidiflora [48919]	U64682	spliceosomal
					Cladonia caroliniana [174049]	AY584664	spliceosomal
					Cladonia diversa [50926]	U64683	spliceosomal
					Cladonia portentosa [50943]	U64684	spliceosomal; synonym Cladina portentosa
					Lecanora hybocarpa [394998]	DQ782883
					Physcia aipolia [50936]	U64686	spliceosomal
					Bacidia schweinitzii [161808]	DQ782884	spliceosomal
					Stereocaulon paschale [50940]	AF279412	spliceosomal
					Stereocaulon taeniarum [80760]	U64687	spliceosomal
					Stereocaulon tomentosum [50939]	U64688	spliceosomal
					Letrouitia domingensis [157776]	AY584672	spliceosomal
					Teloschistes exilis [271840]	AY584671	spliceosomal
					Petractis luetkemuelleri [185330]	AF465461	spliceosomal
					Ochrolechia frigida [146302]	AF279402	spliceosomal
					Ochrolechia juvenalis [286418]	AY640997	spliceosomal
					Ochrolechia parella [129506]	AF274109	spliceosomal
					Pertusaria trachythallina [50933]	U64685	spliceosomal
					Roccella boergesenii [279123]	AY548807	spliceosomal
					Roccella canariensis [72318]	AF110345	spliceosomal
						AF110344	spliceosomal
						AF110342	spliceosomal
						AF110343	spliceosomal
Roccella tuberculata [91947]	AF110351					spliceosomal
	AF110346					spliceosomal
	AF110348					spliceosomal
	AF110350					spliceosomal
	AF110347					spliceosomal
Stachybotrys subsimplex [80384]	AY489679					spliceosomal
Rhamphoria delicatula [152657]	AF242267					spliceosomal
331	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Phaeophyscia orbicularis [116805]	AJ549804		spliceosomal
			Physconia detersa [114785]	AJ240492		spliceosomal
			Physconia distorta [114786]	AJ240491		spliceosomal
			Physconia elegantula [114788]	AJ240489		spliceosomal
			Physconia perisidiosa [114789]	AJ240490		spliceosomal
			Hymenelia lacustris [196135]	AY640992		spliceosomal
			Natantispora lotica [168374]	AF352079		synonym Halosarpheia lotica; unannotated; spliceosomal
				AF352080		synonym Halosarpheia lotica; unannotated; spliceosomal
				AF352081		synonym Halosarpheia lotica; unannotated; spliceosomal
332	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pyrenula cruenta [146309]	AF279406		spliceosomal
333	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pertusaria amara [129507]	AF274104		spliceosomal
337	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Graphis scripta [71600]	AF038878		spliceosomal
357	N	cellular organisms » Eukaryota » stramenopiles » environmental samples » ...	uncultured stramenopile [152704]	AF372748		spliceosomal
357	N		uncultured stramenopile [152704]	AF372749		spliceosomal
374	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum aerophilum [13773]	L07510		Archaeal
			Pyrobaculum aerophilum [13773]	AE009843		Archaeal
		cellular organisms » Archaea » environmental samples » uncultured archaeon » ...	uncultured archaeon [115547]	DQ490015		Archaeal
390	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Dermatocarpon americanum [146294]	AF279383		spliceosomal
			Dermatocarpon bachmannii [172322]	AF492354
			Dermatocarpon miniatum [172328]	AY584668		spliceosomal
			Dermatocarpon miniatum [172328]	AF412409
			Staurothele frustulenta [396381]	DQ823105		spliceosomal
393	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Glomerobolus gelineus [75749]	DQ247811		spliceosomal
			Rhynchostoma minutum [152654]	AF254663		spliceosomal
				AF242269		spliceosomal
				AF242268		spliceosomal
			Pyrenula cruenta [146309]	AF279406		spliceosomal
			Pyrenula pseudobufonia [271832]	AY641001		spliceosomal
			Biatoridium monasteriense [286569]	AY640988		spliceosomal
			Physcia undulata [221732]	AJ549806		spliceosomal
			Fuscidea lygaea [286414]	AY640990		spliceosomal
			Lobaria pulmonaria [86794]	AF183935		spliceosomal
			Nephroma arcticum [48859]	AY424262		spliceosomal
			Teloschistes exilis [271840]	AY584671		spliceosomal
			Hymenelia epulotica [146300]	AF279393		spliceosomal
			Roccella canariensis [72318]	AF110343		spliceosomal
			Roccella canariensis [72318]	AF110342		spliceosomal
			Roccella fuciformis [269074]	AY584678		spliceosomal
			Roccella montagnei [91946]	AF110341		spliceosomal
			Roccella montagnei [91946]	AF110340		spliceosomal
			Roccella tuberculata [91947]	AF110351		spliceosomal
395	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Brachyconidiella monilispora [243521]	AY342015		spliceosomal
400	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Halosarpheia fibrosa [45828]	AF352078		unannotated; spliceosomal
401	N	cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » unclassified diatoms » ...	Heterostegina depressa diatom endosymbiont [375031]	AM233869		spliceosomal
401	N		Heterostegina depressa diatom endosymbiont [375031]	AM233868		spliceosomal
510	N	cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » Bacillariophyceae » ...	Amphora coffeaeformis [265554]	AY485498		spliceosomal
510	N	cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » Fragilariophyceae » ...	Nanofrustulum shiloi [210602]	AY485505		spliceosomal
514	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Porpidia crustulata [40597]	L37735		spliceosomal
516	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Sarcinomyces phaeomuriformis [66227]	X80710		LIT: Antonie Van Leeuwenhoek 68(1):19-33 (1995).
			Geosmithia argillacea [69808]	AB032112 AB032113
				AB032108 AB032109
				AB032116 AB032117
			Penicillium sabulosum [106127]	AB033530
532	N	cellular organisms » Archaea » environmental samples » uncultured archaeon SAGMA-B » ...	uncultured archaeon SAGMA-B [140246]	AB050206		Archaeal
548	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Thermoproteus sp. IC-033 [70772]	AB009616		Archaeal
651	N	cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » unclassified diatoms » ...	Heterostegina depressa diatom endosymbiont [375031]	AM233870		spliceosomal; in variable region ca. E. coli position 651
674	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Mycoblastus sanguinarius [312200]	DQ782879		spliceosomal
			Physcia undulata [221732]	AJ549806		spliceosomal
			Physconia detersa [114785]	AJ240495		spliceosomal
			Physconia distorta [114786]	AJ240494		spliceosomal
			Physconia kurokawae [114790]	AJ240496		spliceosomal
			Megalospora tuberculosa [271826]	AY584674		spliceosomal
675	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Teloschistes exilis [271840]	AY584671		spliceosomal
687	N	cellular organisms » Archaea » environmental samples » uncultured archaeon » ...	uncultured archaeon [115547]	DQ490015		Archaeal
742	N	cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » Coscinodiscophyceae » ...	Cymatosira belgica [49246]	X85387		spliceosomal
			Extubocellulus spinifer [265572]	AY485504		spliceosomal
		cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » unclassified diatoms » ...	Heterostegina depressa diatom endosymbiont [375031]	AM233870		spliceosomal
781	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Thermoproteus sp. IC-033 [70772]	AB009616		Archaeal
			Thermoproteus sp. IC-061 [70773]	AB009617		Archaeal
		cellular organisms » Archaea » environmental samples » uncultured archaeon pHGPA13 » ...	uncultured archaeon pHGPA13 [95173]	AB027540		Archaeal
		cellular organisms » Archaea » environmental samples » uncultured archaeon pHGPA1 » ...	uncultured archaeon pHGPA1 [95944]	AB027539		Archaeal
788	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Sporobolomyces dimmenae [69977]	D66881
791	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Berlesiella nigerrima [86046]	AY541478		spliceosomal
791	N		Melanopsamma pomiformis [80381]	AY489677		spliceosomal
801	N	cellular organisms » Archaea » environmental samples » uncultured archaeon » ...	uncultured archaeon [115547]	DQ490015		Archaeal
813	N	cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » unclassified diatoms » ...	Heterostegina depressa diatom endosymbiont [375031]	AM233871		spliceosomal
813	N		Heterostegina depressa diatom endosymbiont [375031]	AM233870		spliceosomal
879	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Sporobolomyces dimmenae [69977]	D66881
882	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Coenogonium luteum [146297]	AF279386		spliceosomal; synonym Dimerella lutea
883	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Lopezaria versicolor [271828]	AY584675		spliceosomal
			Physcia undulata [221732]	AJ549806		spliceosomal
			Physconia detersa [114785]	AJ240498		spliceosomal
			Physconia distorta [114786]	AJ240497		spliceosomal
			Physconia kurokawae [114790]	AJ240499		spliceosomal
			Physconia venusta [114784]	AJ240500		spliceosomal
			Letrouitia domingensis [157776]	AY584672		spliceosomal
			Diploschistes scruposus [146298]	AF279388		spliceosomal
884	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Capronia pilosella [45095]	DQ823106		spliceosomal
894	N	cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » unclassified diatoms » ...	Heterostegina depressa diatom endosymbiont [375031]	AM233869		spliceosomal
				AM233871		spliceosomal
				AM233870		spliceosomal
				AM233868		spliceosomal
896	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Sporobolomyces dimmenae [69977]	D66881
901	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Caldivirga maquilingensis [76887]	AB013926		Archaeal
901	N	cellular organisms » Archaea » environmental samples » uncultured archaeon pHGPA13 » ...	uncultured archaeon pHGPA13 [95173]	AB027540		Archaeal
908	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Aeropyrum camini [229980]	AB109559		Archaeal
			Aeropyrum pernix [56636]	AB078022		Archaeal
				AB078018		Archaeal
				AB078017		Archaeal
				AP000062		Archaeal; replaces AB008745; strain:K1
				AB078019		Archaeal
				AB019554		Archaeal; strain:TB7
				AB078021		Archaeal
				AB019553		Archaeal; strain:TB1
				AB078020		Archaeal
		cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Caldivirga maquilingensis [76887]	AB013926		Archaeal
		cellular organisms » Archaea » environmental samples » uncultured archaeon SAGMA-B » ...	uncultured archaeon SAGMA-B [140246]	AB050206		Archaeal
		cellular organisms » Archaea » environmental samples » uncultured archaeon pHGPA13 » ...	uncultured archaeon pHGPA13 [95173]	AB027540		Archaeal
915	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cryphonectria parasitica [5116]	AF029891
932	N	cellular organisms » Archaea » environmental samples » uncultured archaeon » ...	uncultured archaeon [115547]	AB109878		Archaeal
939	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Brachyconidiella monilispora [243521]	AY342015		spliceosomal
			Physcia undulata [221732]	AJ549806		spliceosomal
			Physconia detersa [114785]	AJ240504		spliceosomal
			Physconia distorta [114786]	AJ240502		spliceosomal
			Physconia elegantula [114788]	AJ240501		spliceosomal
			Physconia grisea [114791]	AJ240503		spliceosomal
			Physconia kurokawae [114790]	AJ240505		spliceosomal
			Physconia venusta [114784]	AJ240506		spliceosomal
			Coenogonium luteum [146297]	AF279386		spliceosomal; synonym Dimerella lutea
		cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » Bacillariophyceae » ...	Amphiprora paludosa [265537]	AY485468		spliceosomal
			Amphora coffeaeformis [265554]	AY485498		spliceosomal
		cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » Coscinodiscophyceae » ...	Cymatosira belgica [49246]	X85387		spliceosomal
			Extubocellulus spinifer [265572]	AY485504		spliceosomal
		cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » unclassified diatoms » ...	Heterostegina depressa diatom endosymbiont [375031]	AM233870		spliceosomal
		cellular organisms » Eukaryota » stramenopiles » environmental samples » ...	uncultured stramenopile [152704]	AY179991		spliceosomal
			uncultured stramenopile [152704]	AY179992		spliceosomal
943	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Sarcinomyces phaeomuriformis [66227]	X80710		LIT: Antonie Van Leeuwenhoek 68(1):19-33 (1995).
			Geosmithia argillacea [69808]	AB032109 AB032110
				AB032117 AB032118
				AB032113 AB032114
990	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Simonyella variegata [92844]	AY584669		spliceosomal; intron in variable region ca. E. coli position 990
1050	N	cellular organisms » Eukaryota » stramenopiles » environmental samples » ...	uncultured stramenopile [152704]	AY179998		spliceosomal
1057	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Graphina poitiaei [185316]	AF465459		spliceosomal
1068	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Aeropyrum camini [229980]	AB109559		Archaeal
			Aeropyrum pernix [56636]	AB078021		Archaeal
				AB078022		Archaeal
				AB019553		Archaeal; strain:TB1
				AB078017		Archaeal
				AB019554		Archaeal; strain:TB7
				AB078018		Archaeal
				AB078020		Archaeal
				AB078019		Archaeal
1071	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Brachyconidiella monilispora [243521]	AY342015		spliceosomal
			Capronia pilosella [45095]	DQ823106		spliceosomal; misannotated
			Rhynchostoma minutum [152654]	AF242268		spliceosomal
			Lopezaria versicolor [271828]	AY584675		spliceosomal
			Chaetosphaeria curvispora [260530]	AY502933		spliceosomal
1082	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Simonyella variegata [92844]	AY584669		spliceosomal
1083	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Rhamphoria delicatula [152657]	AF242267		spliceosomal
1083	N		Paecilomyces inflatus [218615]	AB099943
1092	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Thermoproteus sp. IC-033 [70772]	AB009616		Archaeal
1101	N	cellular organisms » Archaea » Euryarchaeota » environmental samples » ...	uncultured euryarchaeote [114243]	AY652726		Archaeal
1101	N		uncultured euryarchaeote [114243]	DQ848677
1197	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Alatospora acuminata [222513]	AY204584		spliceosomal
				AY204585		spliceosomal
				AY204583		spliceosomal
			Anguillospora crassa [213319]	AY204574		spliceosomal
		cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » environmental samples » ...	uncultured fungus [175245]	AY168913		spliceosomal
			uncultured fungus [175245]	AY168911		spliceosomal
		cellular organisms » Eukaryota » stramenopiles » Bacillariophyta » Coscinodiscophyceae » ...	Cymatosira belgica [49246]	X85387		spliceosomal
			Extubocellulus spinifer [265572]	AY485504		spliceosomal
		cellular organisms » Eukaryota » stramenopiles » environmental samples » ...	uncultured stramenopile [152704]	AY179993		spliceosomal
1205	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum oguniense [99007]	AB087402		Archaeal
			Thermoproteus neutrophilus [70771]	AB009618		Archaeal
			Thermoproteus sp. IC-033 [70772]	AB009616		Archaeal
			Thermoproteus sp. IC-061 [70773]	AB081846		Archaeal
			Thermoproteus sp. IC-061 [70773]	AB009617		Archaeal
		cellular organisms » Archaea » environmental samples » uncultured archaeon pHGPA13 » ...	uncultured archaeon pHGPA13 [95173]	AB027540		Archaeal
		cellular organisms » Archaea » environmental samples » uncultured archaeon pHGPA1 » ...	uncultured archaeon pHGPA1 [95944]	AB027539		Archaeal
1213	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum oguniense [99007]	AB087402		Archaeal
			Thermoproteus neutrophilus [70771]	AB009618		Archaeal
			Thermoproteus sp. IC-033 [70772]	AB009616		Archaeal
			Thermoproteus sp. IC-061 [70773]	AB081846		Archaeal
			Thermoproteus sp. IC-061 [70773]	AB009617		Archaeal
		cellular organisms » Archaea » environmental samples » uncultured archaeon pHGPA13 » ...	uncultured archaeon pHGPA13 [95173]	AB027540		Archaeal
		cellular organisms » Archaea » environmental samples » uncultured archaeon pHGPA1 » ...	uncultured archaeon pHGPA1 [95944]	AB027539		Archaeal
1214	N	cellular organisms » Eukaryota » stramenopiles » environmental samples » ...	uncultured stramenopile [152704]	AF372749		spliceosomal
1214	N		uncultured stramenopile [152704]	AF372748		spliceosomal
1221	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Simonyella variegata [92844]	AY584669		spliceosomal
1226	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Rhynchostoma minutum [152654]	AF254663		spliceosomal
1226	N		Rhynchostoma minutum [152654]	AF242269		spliceosomal
1228	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Chlorociboria aeruginosa [54693]	AF292087		spliceosomal
1229	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Lopezaria versicolor [271828]	AY584675		spliceosomal
			Crocynia pyxinoides [209117]	AY584677		spliceosomal
			Rhizoplaca chrysoleuca [112062]	AY530879		spliceosomal
				AY530880		spliceosomal
				AY530881		spliceosomal
				AY530882		spliceosomal
				AY530883		spliceosomal
				AY530884		spliceosomal
			Mycoblastus sanguinarius [312200]	DQ782879		spliceosomal
			Flavoparmelia caperata [172615]	AY584663		spliceosomal
			Punctelia hypoleucites [271830]	AY584670		spliceosomal
			Punctelia rudecta [271831]	AY584660		spliceosomal
			Xanthoparmelia conspersa [111622]	AY584665		spliceosomal
			Physconia detersa [114785]	AJ240509		spliceosomal
			Physconia distorta [114786]	AJ240508		spliceosomal
			Physconia elegantula [114788]	AJ240507		spliceosomal
			Physconia kurokawae [114790]	AJ240510		spliceosomal
			Physconia perisidiosa [114789]	AJ240512		spliceosomal
			Physconia venusta [114784]	AJ240511		spliceosomal
			Protoblastenia siebenhaariana [258892]	AY425627		spliceosomal
			Psora crenata [258896]	AY425634		spliceosomal
			Letrouitia domingensis [157776]	AY584672		spliceosomal
			Fulgensia bracteata [157765]	AJ535288		spliceosomal
			Cordyceps prolifica [94209]	AB027324 AB027370		spliceosomal
			Togniniella acerosa [312314]	AY761072		spliceosomal
			Togniniella acerosa [312314]	AY761073		spliceosomal
			Paecilomyces inflatus [218615]	AB099943
1231	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Gymnoderma coccocarpum [206419]	AF523362		spliceosomal
1363	N	cellular organisms » Archaea » environmental samples » uncultured archaeon SAGMA-B » ...	uncultured archaeon SAGMA-B [140246]	AB050206		Archaeal
1391	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Vulcanisaeta distributa [164451]	AB063639		Archaeal
1408	N	cellular organisms » Eukaryota » stramenopiles » environmental samples » ...	uncultured stramenopile [152704]	AY180009		spliceosomal
1502	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Bensingtonia sakaguchii [109612]	AB001747
1502	N		Bensingtonia sakaguchii [109612]	AB001746
1506	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Geosmithia argillacea [69808]	AB032114 AB032115 AB032118 AB032119
1506	N		Geosmithia argillacea [69808]	AB032110 AB032111
1508	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Sporobolomyces dimmenae [69977]	D66881
1510	N	cellular organisms » Eukaryota » stramenopiles » environmental samples » ...	uncultured stramenopile [152704]	AY179992		spliceosomal
1514	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Capronia pilosella [45095]	DQ826737		spliceosomal
			Capronia semiimmersa [5601]	X65199		spliceosomal; genbank anamorph Phialophora americana
			Exophiala mesophila [212818]	AF542377		spliceosomal
			Arthonia lapidicola [600402]			LIT: Curr. Genet. 29(6):582-586 (1996).
23S	U	323	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. M1T [278051]	AB178788	Archaeal
					Thermoproteus sp. IC-031 [278048]	AB178782	Archaeal
					Thermoproteus sp. IC-033 [70772]	AB178781	Archaeal
					Thermoproteus sp. IC-061 [70773]	AB178789	Archaeal
					Thermoproteus sp. IC-070 [278053]	AB178791	Archaeal
		471	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Caldivirga maquilingensis [76887]	AB178785	Archaeal
		471	N		Pyrobaculum sp. M1T [278051]	AB178788	Archaeal
		674	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Echinoplaca strigulacea [394997]	DQ782905	spliceosomal
		677	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Letrouitia domingensis [157776]	AY584648	spliceosomal
		678	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Calicium montanum [262416]	AY453635	spliceosomal
					Calicium quercinum [262418]	AY453636	spliceosomal
					Cyphelium notarisii [262920]	AY453640	spliceosomal
					Cyphelium tigillare [140094]	AY453642	spliceosomal
					Cyphelium tigillare [140094]	AY453641	spliceosomal
					Lecanora hybocarpa [394998]	DQ782910	spliceosomal
					Mycoblastus sanguinarius [312200]	DQ782915	spliceosomal
					Flavoparmelia caperata [172615]	AY584639	spliceosomal
					Melanelia disjuncta [180415]	AJ421431	spliceosomal
					Melanelixia fuliginosa [180412]	AJ421428	spliceosomal; synonym: Melanelia fuliginosa
					Menegazzia terebrata [180482]	AY584637	spliceosomal
					Parmotrema tinctorum [235862]	AY584635	spliceosomal
					Punctelia hypoleucites [271830]	AY584646	spliceosomal
					Punctelia rudecta [271831]	AY584636	spliceosomal
					Xanthoparmelia pulla [172623]	AJ421433	synonym Neofuscelia pulla; spliceosomal
					Physcia aipolia [50936]	AY773914	spliceosomal
					Lobaria pulmonaria [86794]	AF401965	spliceosomal
					Lobaria pulmonaria [86794]	AF183934	spliceosomal
					Lobaria quercizans [146301]	AF279397	spliceosomal
					Placynthiella icmalea [129542]	AY212846	spliceosomal
					Trapeliopsis percrenata [133179]	AF279302	spliceosomal
					Gyalecta jenensis [146295]	AF279391	spliceosomal
					Gyalecta jenensis [146295]	AF465450	spliceosomal
					Porina guentheri [146306]	AF279405	spliceosomal
					Hymenelia lacustris [196135]	AY640953	spliceosomal
					Hymenelia lacustris [196135]	AY533006	spliceosomal
					Tremolecia atrata [273074]	AY533007	spliceosomal
					Chaetosphaeria sp. 17 [146320]	AF279417	spliceosomal
					Chaetosphaeria sp. 17 [146320]	AF279416	spliceosomal
					Chaetosphaeria sp. 7 [146321]	AF279418	spliceosomal
					Chaetosphaeria sp. 8 [146322]	AF279419	spliceosomal
					Melanochaeta sp. 2 [146323]	AF279420	spliceosomal
					Melanochaeta sp. 8 [146324]	AF279421	spliceosomal
					Linocarpon appendiculatum [252208]	AY346291	spliceosomal
		681	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Stictis radiata [38076]	AF356663	spliceosomal
		704	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cyphelium tigillare [140094]	AY453642	spliceosomal
					Cyphelium tigillare [140094]	AY453641	spliceosomal
					Hilberina caudata [260657]	AY436406	spliceosomal
		711	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Gyalecta jenensis [146295]	AF465450	spliceosomal
					Gyalecta jenensis [146295]	AF279391	spliceosomal
					Gyalecta thelotremella [185328]	AF465455	spliceosomal
		767	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pertusaria oculata [267812]	AY568005	spliceosomal
		775	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Flavoparmelia caperata [172615]	AY584639	spliceosomal
					Dibaeis baeomyces [83478]	AF279385	spliceosomal
					Pertusaria pupillaris [267815]	AY568007	spliceosomal
		776	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Capronia pilosella [45095]	AF279378	spliceosomal
					Lecanora hybocarpa [394998]	DQ782910	spliceosomal
					Bacidia rosella [93112]	AY300829	spliceosomal
					Petractis luetkemuelleri [185330]	AF465454	spliceosomal
					Pertusaria coccodes [133176]	AF279295	spliceosomal
					Pertusaria hymenea [133177]	AF279297	spliceosomal
					Pertusaria kalelae [133180]	AF279298	spliceosomal
		777	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Calicium adaequatum [262410]	AY452502	spliceosomal
					Calicium adaequatum [262410]	AY452503	spliceosomal
					Calicium quercinum [262418]	AY453636	spliceosomal
Anaptychia runcinata [116789]	AY773919					spliceosomal; unannotated
Rinodina tunicata [144718]	AF457568					spliceosomal
Rinodina tunicata [144718]	AY773920					spliceosomal
Placynthiella icmalea [129542]	AY212846					spliceosomal
780	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pertusaria tejocotensis [133185]	AF279301		spliceosomal
782	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Caloplaca flavorubescens [140092]	AY300831		spliceosomal
783	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Gyalecta jenensis [146295]	AF465450		spliceosomal
			Gyalecta thelotremella [185328]	AF465455		spliceosomal
			Sagaaromyces abonnis [213797]	AF539469		spliceosomal; synonym Halosarpheia abonnis
			Sagaaromyces ratnagiriensis [213798]	AF539470		spliceosomal; synonym Halosarpheia ratnagiriensis
			Annulatascus triseptatus [246472]	AY346257		spliceosomal
784	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Melanelixia glabra [180411]	AJ421427		spliceosomal; synonym: Melanelia glabra
			Parmotrema tinctorum [235862]	AY584635		spliceosomal
			Bellemerea subsorediza [273080]	AY532983		spliceosomal
			Phaeographina chrysocarpa [185318]	AF465448		spliceosomal
			Tremolecia atrata [273074]	AY533007		spliceosomal
			Pertusaria lactescens [267811]	AY568004		spliceosomal
			Melanochaeta sp. 8 [146324]	AF279421		spliceosomal
786	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pertusaria kalelae [133180]	AF279298		spliceosomal
787	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Dibaeis baeomyces [83478]	AF279385		spliceosomal
801	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Megalospora tuberculosa [271826]	AY584650		spliceosomal
824	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Stictis radiata [38076]	AF356663		spliceosomal
829	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Placynthiella icmalea [129542]	AY212846		spliceosomal
830	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Coenogonium leprieurii [185321]	AF465442		spliceosomal
858	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Trapeliopsis granulosa [129519]	AF279415		spliceosomal
858	N		Trapeliopsis percrenata [133179]	AF279302		spliceosomal
898	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Calicium abietinum [262409]	AY452501		spliceosomal
898	N		Calicium tricolor [39939]	AY453637		spliceosomal
978	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Gyalecta herrei [185326]	AF465449		spliceosomal
			Gyalecta jenensis [146295]	AF279391		spliceosomal
			Gyalecta jenensis [146295]	AF465450		spliceosomal
1024	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Ocellularia alborosella [185314]	AF465452		spliceosomal
1054	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Physcia aipolia [50936]	AY773914		spliceosomal
			Rinodina tunicata [144718]	AY773920		spliceosomal; misannotated
			Rinodina tunicata [144718]	AF457569		spliceosomal
			Coenogonium leprieurii [185321]	AF465442		spliceosomal
			Chroodiscus coccineus [185312]	AF465441		spliceosomal
1085	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Aeropyrum pernix [56636]	AB078018		Archaeal
				AB019554		Archaeal; strain:TB7
				AB078017		Archaeal
				AB078020		Archaeal
				AB078021		Archaeal
				AP000062		Archaeal; replaces AB008745; strain:K1
				AB078019		Archaeal
				AB019553		Archaeal; strain:TB1
				AB078022		Archaeal
1091	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Coenogonium luteum [146297]	AF279387		spliceosomal; synonym Dimerella lutea
1092	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Calicium abietinum [262409]	AY452501		spliceosomal
			Calicium denigratum [262412]	AY452505		spliceosomal
			Physcia aipolia [50936]	AY773914		spliceosomal
1093	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Lopezaria versicolor [271828]	AY584651		spliceosomal
1093	N		Ocellularia alborosella [185314]	AF465452		spliceosomal
1098	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Bacidia schweinitzii [161808]	DQ782911		spliceosomal
1098	N		Coenogonium leprieurii [185321]	AF465442		spliceosomal
1100	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Pertusaria oculata [267812]	AY568005		spliceosomal
1102	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Lecanactis abietina [40113]	AY548812		spliceosomal
1102	N		Roccella boergesenii [279123]	AY548814		spliceosomal
1699	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. M1T [278051]	AB178788		Archaeal
			Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
			Thermoproteus sp. IC-033 [70772]	AB178781		Archaeal
			Thermoproteus sp. IC-070 [278053]	AB178791		Archaeal
1809	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum organotrophum [2278]			Archaeal; LIT: Gene 121(1):103-110 (1992).
			Thermoproteus neutrophilus [70771]	AB178792		Archaeal
			Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
			Thermoproteus sp. IC-033 [70772]	AB178781		Archaeal
			Thermoproteus sp. IC-070 [278053]	AB178791		Archaeal
			Vulcanisaeta distributa [164451]	AB178784		Archaeal
1849	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Cordyceps prolifica [94209]	AB044640		spliceosomal
1903	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Physcia aipolia [50936]	AY773929		spliceosomal
			Physconia enteroxantha [114787]	AF457573		spliceosomal
			Physconia enteroxantha [114787]	AY773931		spliceosomal
1923	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Byssoporia terrestris [80630]	AD001572
1927	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Aeropyrum pernix [56636]	AB019554		Archaeal; strain:TB7
				AB078021		Archaeal
				AB078020		Archaeal
				AP000062		Archaeal; replaces AB008745; strain:K1
				AB078019		Archaeal
			Staphylothermus marinus [2280]	M38363		Archaeal
			Staphylothermus marinus [2280]	M86623		Archaeal
		cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. M0H [278049]	AB178786		Archaeal
			Vulcanisaeta distributa [164451]	AB178783		Archaeal
1929	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Buellia capitis-regum [144685]	AF457572		spliceosomal
1929	N		Physcia aipolia [50936]	AY773929		spliceosomal; unannotated
1952	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Desulfurococcus mobilis [2274]	X03263		Archaeal
		cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. 14b [278050]	AB178787		Archaeal
			Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
			Thermoproteus sp. IC-061 [70773]	AB178789		Archaeal
1974	M	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Byssoporia terrestris [80630]	AD001572
2076	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Buellia muriformis [196133]	AF457571		spliceosomal
2409	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum sp. M0H [278049]	AB178786		Archaeal
			Pyrobaculum sp. M1T [278051]	AB178788		Archaeal
			Thermoproteus sp. IC-031 [278048]	AB178782		Archaeal
			Thermoproteus sp. IC-033 [70772]	AB178781		Archaeal
			Thermoproteus sp. IC-070 [278053]	AB178791		Archaeal
2445	N	cellular organisms » Eukaryota » Fungi/Metazoa group » Fungi » Dikarya » ...	Hymenelia lacustris [196135]	AF457570		spliceosomal; synonym: Ionaspis lacustris
2534	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Vulcanisaeta distributa [164451]	AB178784		Archaeal
2552	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Thermoproteales » ...	Pyrobaculum organotrophum [2278]			Archaeal; LIT: Gene 121(1):103-110 (1992).
2601	N	cellular organisms » Archaea » Crenarchaeota » Thermoprotei » Desulfurococcales » ...	Staphylothermus marinus [2280]	M86623		Archaeal
2601	N		Staphylothermus marinus [2280]	M38363		Archaeal

Comparative RNA Web Site and Project The Gutell Lab

Table 2B: Number of rRNA Introns, Intron Position, and Phylogenetic Group for Intron Type Unknown