query: SELECT phylo,cell_loc,from_gene,rna_class,accession,structure,tax_id,organism,comment,site_pos,seq_size,seq_nbr,gr_id FROM subint WHERE phylo LIKE '%Lecanora%' AND cell_loc LIKE '%Nucleus%' AND from_gene LIKE '%23S%' AND available = 'Y' AND ready = 'Y' AND ( percentage > 89 OR percentage = -1 OR seq_size = -1 ) ORDER BY phylo,cell_loc,from_gene,site_pos,rna_class,seq_nbr,organism

Table 4B View:    

Structure File Format:     

Phylogeny Genus L EX RC Org Acc IP Struct. Comment
Eukaryota Fungi/Metazoa group Fungi Biatoridium N 23S I Biatoridium monasteriense AY640947
798    
1090    
Lopezaria N 23S U Lopezaria versicolor AY584651
1093   spliceosomal
Notolecidea N 23S I Notolecidea subcontinua AY532987
800    
Arthrorhaphis N 23S I Arthrorhaphis citrinella AF279376
798    
Calicium N 23S U Calicium abietinum AY452501
898   spliceosomal
1092   spliceosomal
Calicium adaequatum AY452502
777   spliceosomal
AY452503
777   spliceosomal
Calicium denigratum AY452505
1092   spliceosomal
Calicium montanum AY453635
678   spliceosomal
Calicium quercinum AY453636
678   spliceosomal
777   spliceosomal
Calicium tricolor AY453637
898   spliceosomal
I Calicium abietinum AY452501
1025    
Calicium adaequatum AY452502
800    
1094    
AY452503
800    
Calicium adspersum AY452504
1025    
Calicium glaucellum AY453646
800    
1090    
Calicium montanum AY453635
1025    
Calicium tricolor AY453637
1090    
Cyphelium N 23S U Cyphelium notarisii AY453640
678   spliceosomal
Cyphelium tigillare AY453641
678   spliceosomal
704   spliceosomal
AY453642
678   spliceosomal
704   spliceosomal
Tholurna N 23S I Tholurna dissimilis AY453644
798    
1025    
Cladonia N 23S I Cladonia caroliniana AY584640
798    
Cladonia rangiferina AY533000
1025    
Lecanora N 23S I Lecanora cenisia AY532992
1025    
1094    
Lecanora concolor AY640954
1025    
Lecanora hybocarpa DQ782910
1090    
U Lecanora hybocarpa DQ782910
678   spliceosomal
776   spliceosomal
Rhizoplaca N 23S I Rhizoplaca chrysoleuca AY648104
798    
1090    
Rhizoplaca huashanensis AY648105
798    
1094    
Scoliciosporum N 23S I Scoliciosporum umbrinum AY640967
1090    
Strangospora N 23S I Strangospora pinicola AY640970
1025    
AY640971
1025    
Hypocenomyce N 23S I Hypocenomyce scalaris DQ782914
800    
Mycoblastus N 23S U Mycoblastus sanguinarius DQ782915
678   spliceosomal
I Mycoblastus sanguinarius DQ782915
1025    
1090    
Flavoparmelia N 23S U Flavoparmelia caperata AY584639
678   spliceosomal
775   spliceosomal
Melanelia N 23S U Melanelia disjuncta AJ421431
678   spliceosomal
I Melanelia disjuncta AJ421431
1090    
Melanelia stygia AJ421434
1094    
Melanelixia N 23S U Melanelixia fuliginosa AJ421428
678   spliceosomal; synonym: Melanelia fuliginosa
Melanelixia glabra AJ421427
784   spliceosomal; synonym: Melanelia glabra
I Melanelixia fuliginosa AJ421428
798   synonym: Melanelia fuliginosa
1025   synonym: Melanelia fuliginosa
AJ421435
1025   synonym: Melanelia fuliginosa
Melanohalea N 23S I Melanohalea elegantula AJ421437
1025   synonym: Melanelia elegantula
1090   synonym: Melanelia elegantula
Melanohalea exasperata AJ421438
1025   synonym: Melanelia exasperata
Melanohalea exasperatula AJ421436
1025   synonym: Melanelia exasperatula
1090   synonym: Melanelia exasperatula
Menegazzia N 23S U Menegazzia terebrata AY584637
678   spliceosomal
Parmotrema N 23S U Parmotrema tinctorum AY584635
678   spliceosomal
784   spliceosomal
I Parmotrema tinctorum AY584635
1090    
Punctelia N 23S U Punctelia hypoleucites AY584646
678   spliceosomal
Punctelia rudecta AY584636
678   spliceosomal
Xanthoparmelia N 23S U Xanthoparmelia pulla AJ421433
678   synonym Neofuscelia pulla; spliceosomal
I Xanthoparmelia pulla AJ421433
1090   synonym Neofuscelia pulla
Amandinea N 23S I Amandinea punctata AY773918
1094    
AY773934
2449    
Anaptychia N 23S U Anaptychia runcinata AY773919
777   spliceosomal; unannotated
I Anaptychia runcinata AY773919
1094    
Buellia N 23S I Buellia aethalea AY773927
1921    
Buellia alboatra AY773915
1090    
AY773928
1921    
AY773933
2449    
Buellia geophila AY773917
779    
1025    
1090    
Buellia griseovirens AY773910
779    
798    
1025    
Buellia muriformis AY773925
1025    
Buellia penichra AY773936
2449    
IE Buellia alboatra AY773928
2066    
Buellia geophila AY787754
2563    
U Buellia capitis-regum AF457572
1929   spliceosomal
Buellia muriformis AF457571
2076   spliceosomal
Dimelaena N 23S IE Dimelaena oreina AY773940
2563    
Diplotomma N 23S I Diplotomma alboatrum AY452500
779    
1090    
Diplotomma epipolium AY773916
779    
1090    
Phaeophyscia N 23S I Phaeophyscia orbicularis AY773926
1090    
Physcia N 23S U Physcia aipolia AY773914
678   spliceosomal
1054   spliceosomal
1092   spliceosomal
AY773929
1903   spliceosomal
1929   spliceosomal; unannotated
I Physcia aipolia AY773914
779    
798    
DQ782904
1090    
AY773929
1921    
Physcia stellaris AY773912
779    
798    
1094    
Physcia tenella AY773908
779    
798    
1094    
IE Physcia aipolia AY773929
2066    
Physconia N 23S I Physconia distorta AY773913
798    
1025    
1094    
AY773930
1921    
Physconia enteroxantha AY773909
779    
798    
1025    
AY773931
1921    
AF457573
1921    
AY773937
2449    
Physconia grisea AY773921
779    
1025    
1094    
Physconia perisidiosa AY773911
798    
1094    
U Physconia enteroxantha AF457573
1903   spliceosomal
AY773931
1903   spliceosomal
Rinodina N 23S I Rinodina atrocinerea AY773923
779    
1094    
AY773932
1921    
2069    
Rinodina capensis AY773924
779    
1025    
AY773938
2449    
Rinodina milvina AY773922
779    
1025    
1094    
Rinodina tunicata AY773920
800    
1025    
1094    
AF457568
800    
AF457569
1094    
AY773939
2449    
IE Rinodina capensis AY773938
2563    
Rinodina tunicata AY773939
2563    
U Rinodina tunicata AY773920
777   spliceosomal
1054   spliceosomal; misannotated
AF457568
777   spliceosomal
AF457569
1054   spliceosomal
Bellemerea N 23S U Bellemerea subsorediza AY532983
784   spliceosomal
Immersaria N 23S I Immersaria usbekica AY532985
1090    
Koerberiella N 23S I Koerberiella wimmeriana AY532986
798    
Porpidia N 23S I Porpidia albocaerulescens AY532938
1025    
AF356676
1025    
Porpidia carlottiana AY532940
1090    
Porpidia albocaerulescens N 23S I Porpidia albocaerulescens var. polycarpiza AY532937
1025    
Protoblastenia N 23S I Protoblastenia rupestris AY533008
798    
1025    
Bacidia N 23S U Bacidia rosella AY300829
776   spliceosomal
Bacidia schweinitzii DQ782911
1098   spliceosomal
I Bacidia rosella AY300829
798    
Bacidia schweinitzii DQ782911
798