Table 4B: Intron Type Data [Expanded View]

query: SELECT phylo,cell_loc,from_gene,rna_class,accession,structure,tax_id,organism,comment,site_pos,seq_size,seq_nbr,gr_id FROM subint WHERE phylo LIKE '%Eukaryota%' AND (from_gene = '16S' OR from_gene = '23S') AND available = 'Y' AND ready = 'Y' AND ( percentage > 89 OR percentage = -1 OR seq_size = -1 ) ORDER BY phylo,cell_loc,from_gene,site_pos,rna_class,seq_nbr,organism

Phylogeny			Genus	L	EX	RC	Org	Acc	IP	Struct.	Comment
Eukaryota	Alveolata	Ciliophora	Tetrahymena	N	23S	IC1	Tetrahymena cosmopolitanis	X03107	1925	a.I1
							Tetrahymena hyperangularis	X03106	1925	a.I1
							Tetrahymena malaccensis	X03105	1925	a.I1
							Tetrahymena pigmentosa	J01210	1925	a.I1
							Tetrahymena silvana		1925		Engberg et al. (1988) Molecular Genetics (Life Sci. Adv.)
							Tetrahymena sonneborni	X03108	1925
							Tetrahymena thermophila	V01416 J01235	1925	b.I1
			Tetrahymena thermophila	N	23S	IC1	Tetrahymena thermophila (SCHEM)		1925	s.I1
			Acineta	N	16S	IC1	Acineta sp. OSW-2003-1	AY332717	891
							Acineta sp. OSW-2003-2	AY332718	891
							Acineta sp. OSW-2003-3	AY332719	891
			Tokophrya	N	16S	IC1	Tokophrya lemnarum	AY332720	891
								AY332720	1506
								AY332721	891
								AY332721	1506
	Amoebozoa	Centramoebida	Acanthamoeba	M	23S	IB	Acanthamoeba castellanii	U12386	1931
						IB	Acanthamoeba castellanii	U03732	1931	a.I1
						IA3	Acanthamoeba castellanii	U12386	1951
								U12386	2593
								U03732	1951
								U03732	2593
				N	16S	IC1	Acanthamoeba griffini	U02540 U07412	516	b.I1
							Acanthamoeba griffini	S81337	516	b.I1
							Acanthamoeba lenticulata	U94736	943
								U94737	943
								U94735	943
								U94738	943
								U94741	943
								U02539	943		ATCC 30841
								U94740	956
								U94739	956
						I	Acanthamoeba lenticulata	U94734	1389		strain 407-3a
			unclassified Acanthamoeba	N	16S	IC1	Acanthamoeba sp. KA/E4	AF349045	516
							Acanthamoeba sp. KA/MSG23	AY176047	1389
							Acanthamoeba sp. KA/MSS2	AY173013	516
							Acanthamoeba sp. KA/MSS6	AY173014	516
							Acanthamoeba sp. KA/MSS7	AY173015	516
							Acanthamoeba sp. TUMSJ-341	AF352391	956
		Mycetozoa	Dictyostelium	M	23S	IA1	Dictyostelium discoideum	D16466 AB000109	2504
			Badhamia	N	16S	IC1	Badhamia gracilis	AJ555451	516
			Didymium	N	16S	I	Didymium iridis	X71792	956
								AJ938154	956
								AJ938153	956
								AJ938151	1389
								AJ938150	1389
					23S	IB1	Didymium iridis	X60210	1949
					23S	IC1	Didymium iridis	X60210	2449
			Fuligo	N	16S	IC1	Fuligo septica	AJ584697	516
								AJ584697	1062		noted as 1065 in GB annotation
								AJ555452	516
						I	Fuligo septica	AJ584697	911
						I	Fuligo septica	AJ584697	956
					23S	I	Fuligo septica	AJ584697	569
						I	Fuligo septica	AJ584697	1090
						IC	Fuligo septica	AJ584697	1898
						IC	Fuligo septica	AJ584697	1911
						IC3	Fuligo septica	AJ584697	1949
						IC3	Fuligo septica	AJ584697	2449
						IC1	Fuligo septica	AJ584697	2500
						IC1	Fuligo septica	AJ584697	2584
			Physarum	N	16S	IC1	Physarum flavicomum	AJ555453 AJ555454	516
					23S	IC3	Physarum flavicomum	X78959	1949
							Physarum flavicomum	X78959	2449
							Physarum polycephalum	V01159	1949
2449								V01159
X60211								1949
X60211								2449
IC1						Physarum polycephalum	L03183	1925	a.I1
Tubulinea		Hartmannella	N	16S	IC1	Hartmannella vermiformis	DQ123623	943
Euglenozoa	Euglenida	Ploeotia	N	16S	IC1	Ploeotia costata	AF525486	516
Fungi/Metazoa group	Fungi/Metazoa incertae sedis	Amoebidium	M	16S	IIB	Amoebidium parasiticum	AF538044	788
				16S	IB1	Amoebidium parasiticum	AF538044	1403
				23S	IB2	Amoebidium parasiticum	AF538042	1773
					IB2	Amoebidium parasiticum	AF538042	2584
					IC2	Amoebidium parasiticum	AF538042	1931
					IB1	Amoebidium parasiticum	AF538042	1943
					IB1	Amoebidium parasiticum	AF538042	2500
					IIB	Amoebidium parasiticum	AF538042	2449
	Fungi	Allomyces	M	23S	IIB	Allomyces macrogynus	U41288	2059
					IA1	Allomyces macrogynus	U41288	2449
					IA1	Allomyces macrogynus	U41288	2504
		Karlingiomyces	N	16S	IE	Karlingiomyces sp. JEL93	AF164278 AF164279 AF164280	1199
		Rhizophydium	M	23S	IB2	Rhizophydium sp. 136	AF404306	796
								2067
								2256
					IB	Rhizophydium sp. 136	AF404306	1915
								1943
								2500
					IIB	Rhizophydium sp. 136	AF404306	2059
					IA1	Rhizophydium sp. 136	AF404306	2449
					I	Rhizophydium sp. 136	AF404306	2585
		Spizellomyces	N	16S	IE	Spizellomyces kniepii	AF164238	956		no 5' exon; missing 5' end of intron
					IC1	Spizellomyces punctatus	AY546684	516
					IC1	Spizellomyces punctatus	AY546684	1389
				23S	IC1	Spizellomyces punctatus	AY546692	798
				23S	IE	Spizellomyces punctatus	AY546692	1926
			M	23S	IB2	Spizellomyces punctatus	AF404303	1065
		Oedogoniomyces	N	16S	IC1	Oedogoniomyces sp. CR84	AY635839	943
		Oedogoniomyces	N	16S	IE	Oedogoniomyces sp. CR84	AY635839	1199
		Coccotrema	N	23S	I	Coccotrema pocillarium	AF274093	1025
		Pneumocystis	N	16S	IC1	Pneumocystis carinii	X12708 X13687	1506	a.I1
				16S	IC1	Pneumocystis murina	AY532651	1506
				23S	IC1	Pneumocystis carinii	L13615	1921	a.I1
							L13614	1921	a.I1
							AF236872	1921
							M86760	1921	a.I1
		Protomyces	N	16S	IC1	Protomyces inouyei	AY548295	943
							D11377	943	a.I1
							D11377	1506	a.I1
						Protomyces macrosporus	D85143	943	a.I1
						Protomyces macrosporus	D85143	1506	a.I1
						Protomyces pachydermus	D85142	943	a.I1
						Protomyces pachydermus	D85142	1506	a.I1
				23S	IC1	Protomyces inouyei	AY548294	798
		Alatospora	N	16S	I	Alatospora acuminata	AY357261	788
					I	Alatospora acuminata	AY357261	1210
					U	Alatospora acuminata	AY204585	1197		spliceosomal
							AY204584	1197		spliceosomal
							AY204583	1197		spliceosomal
		Anguillospora	N	16S	U	Anguillospora crassa	AY204574	1197		spliceosomal
		Anguillospora	N	16S	IC1	Anguillospora rosea	AY357265	1506
		Brachyconidiella	N	16S	U	Brachyconidiella monilispora	AY342015	395		spliceosomal
								939		spliceosomal
								1071		spliceosomal
		Geniculifera	N	16S	IC1	Geniculifera cystosporia	U51966	1506
		Glomerobolus	N	16S	U	Glomerobolus gelineus	DQ247811	299		spliceosomal
								330		spliceosomal
								393		spliceosomal
					I	Glomerobolus gelineus	DQ247811	497		intron in variable region ca. E. coli position 497
								896
								989
		Hyphozyma	N	16S	I	Hyphozyma lignicola	AJ496239	989
						Hyphozyma sanguinea	AJ496238	1389
						Hyphozyma sanguinea	AJ496238	1506
Kabatina		N	16S	IC1	Kabatina juniperi	AY183367	1506
Kabatina		N	16S	IC1	Kabatina thujae	AF462437	1506
Leptodontidium		N	16S	IE	Leptodontidium quercuum	AF056375	516
Symbiotaphrina		N	16S	I	Symbiotaphrina buchneri	DQ248313	114
							287
							1052
							1210
							1506
	23S		I	Symbiotaphrina buchneri	DQ248313	1094
						1921
						2449
			IE	Symbiotaphrina buchneri	DQ248313	2066
			IC1	Symbiotaphrina kochii	DQ248314	1921
mitosporic Orbilia auricolor	N	16S	IC1	Arthrobotrys cladodes	U51945	1506
mitosporic Orbilia auricolor	N	16S	IC1	Arthrobotrys cladodes	U51952	1506
Arthrobotrys	N	16S	IC1	Arthrobotrys botryospora	U51955	1506
				Arthrobotrys conoides	AF106534	1506
				Arthrobotrys cylindrospora	AF106538	943		synonym Dactylella cylindrospora
					AF106538	1506		synonym Dactylella cylindrospora
					U51953	1506
				Arthrobotrys polycephala	U51951	1506
				Arthrobotrys superba	U51949	1506
Dactylella	N	16S	IC1	Dactylella copepodii	U51964	1506
				Dactylella gampsospora	U51960	1506
				Dactylella huisuniana	U51965	1506
				Dactylella oviparasitica	AY185772	943
Drechslerella	N	16S	IC1	Drechslerella brochopaga	U51950	1506	a.I1	synonym: Arthrobotrys brochopaga
Monacrosporium	N	16S	IC1	Monacrosporium arcuatum	AF106527	943
				Monacrosporium asthenopagum	U51962	1506		synonym Dactylella asthenopaga
				Monacrosporium bembicodes	U51976	1506
				Monacrosporium leptosporum	AF106529	1506
				Monacrosporium polybrochum	U51973	1506		synonym Dactylella polybrocha
Thelocarpella	N	16S	I	Thelocarpella gordensis	AY641014	516
		16S	I	Thelocarpella gordensis	AY641014	788
		23S	I	Thelocarpella gordensis	AY640974	1090
Ceramothyrium	N	16S	IC1	Ceramothyrium carniolicum	AF346418	788
Berlesiella	N	16S	U	Berlesiella nigerrima	AY541478	330		spliceosomal
Berlesiella	N	16S	U	Berlesiella nigerrima	AY541478	791		spliceosomal
Capronia	N	16S	IE	Capronia pilosella	AY316152	516
			U	Capronia pilosella	DQ823106	884		spliceosomal
					DQ823106	1071		spliceosomal; misannotated
					DQ826737	1514		spliceosomal
				Capronia semiimmersa	X65199	1514		spliceosomal; genbank anamorph Phialophora americana
			IC1	Capronia pilosella	AY316152	943
		23S	U	Capronia pilosella	AF279378	776		spliceosomal
			IC1	Capronia pilosella	DQ823099	798
			IC1	Capronia pilosella	AF279378	798
Exophiala	N	16S	IC1	Exophiala calicioides	AB007686	943		was Graphium calicioides
					AB007686	1506		was Graphium calicioides
					AB007685	943		was Graphium calicioides
					AB007685	1506		was Graphium calicioides
				Exophiala dermatitidis	X78481	943
					Z75304	943	a.I1
					DQ823107	943
				Exophiala prototropha	X91900	0		synonym Pullularia prototropha
			IE	Exophiala calicioides	AB007685	1199		was Graphium calicioides
				Exophiala calicioides	AB007686	1199		was Graphium calicioides
				Exophiala dermatitidis	Z75303	516
				Exophiala nigra	X91897	989	b.I1	was Nadsoniella nigra
				Exophiala nigra	X80707	989		was Nadsoniella nigra
				Exophiala prototropha	X91899	0		synonym Pullularia prototropha
				Exophiala prototropha	X91901	0		synonym Pullularia prototropha
			I	Exophiala dermatitidis	DQ823107	516
			U	Exophiala mesophila	AF542377	1514		spliceosomal
		23S	IC1	Exophiala dermatitidis	DQ823100	798
Sarcinomyces	N	16S	U	Sarcinomyces phaeomuriformis	X80710	516		LIT: Antonie Van Leeuwenhoek 68(1):19-33 (1995).
Sarcinomyces	N	16S	U	Sarcinomyces phaeomuriformis	X80710	943		LIT: Antonie Van Leeuwenhoek 68(1):19-33 (1995).
Rhynchostoma	N	16S	U	Rhynchostoma minutum	AF242269	299		spliceosomal
						393		spliceosomal
						1226		spliceosomal
					AF254663	299		spliceosomal
						393		spliceosomal
						1226		spliceosomal
					AF242268	300		spliceosomal
						393		spliceosomal
						1071		spliceosomal
			I	Rhynchostoma minutum	AF242270	788
					AF242269	788
					AF242269	989
					AF242268	788
					AF254663	788
					AF254663	989
				Rhynchostoma proteae	AY230152	788
Pyrenula	N	16S	U	Pyrenula cruenta	AF279406	332		spliceosomal
				Pyrenula cruenta	AF279406	393		spliceosomal
				Pyrenula pseudobufonia	AY641001	393		spliceosomal
			I	Pyrenula cruenta	AF279406	788
				Pyrenula pseudobufonia	AY641001	516
				Pyrenula pseudobufonia	AY641001	788
		23S	I	Pyrenula pseudobufonia	AY640962	798
Pyrgillus	N	23S	I	Pyrgillus javanicus	DQ823103	798
Pyrgillus	N	23S	I	Pyrgillus javanicus	DQ823103	1025
Agonimia	N	16S	U	Agonimia sp. AFTOL 684	DQ782885	265		spliceosomal
Agonimia	N	16S	I	Agonimia sp. AFTOL 684	DQ782885	943
Dermatocarpon	N	16S	U	Dermatocarpon americanum	AF279383	390		spliceosomal
				Dermatocarpon bachmannii	AF492354	390
				Dermatocarpon miniatum	AF412409	390
				Dermatocarpon miniatum	AY584668	390		spliceosomal
			I	Dermatocarpon americanum	AF279383	788
				Dermatocarpon luridum	AY640989	989
				Dermatocarpon miniatum	AY584668	788
					AY584668	943
					AF412409	788
		23S	I	Dermatocarpon luridum	AY640948	1094
				Dermatocarpon miniatum	AY584644	798
				Dermatocarpon miniatum	AY584644	1094
Endocarpon	N	16S	I	Endocarpon pallidulum	DQ823104	788
						943
						989
						1199
						1389
					DQ826735	1506
		23S	I	Endocarpon pallidulum	DQ823097	798
Staurothele	N	16S	U	Staurothele frustulenta	DQ823105	390		spliceosomal
			I	Staurothele frustulenta	DQ823105	788
						943
						989
						1052
						1199
						1389
					DQ826736	1506
Verrucaria	N	23S	I	Verrucaria pachyderma	AF356668	798
Verrucaria	N	23S	I	Verrucaria pachyderma	AF356668	1094
Caliciopsis	N	16S	IE	Caliciopsis pinea	AF242260	516
Byssochlamys	N	16S	IC1	Byssochlamys fulva	AY526482	943
				Byssochlamys fulva	AB023941	943
				Byssochlamys zollerniae	AB023940	943
				Byssochlamys zollerniae	AY526485	943
			IE	Byssochlamys zollerniae	AY526485	516
Byssochlamys spectabilis	N	16S	IC1	Paecilomyces variotii	Z69593	0
Byssochlamys spectabilis	N	16S	IC1	Paecilomyces variotii	AB023946	943
Emericella	M	23S	IA1	Emericella nidulans	J01390	2449		synonym Aspergillus nidulans
Penicilliopsis	N	16S	IC1	Penicilliopsis clavariiformis	AB003945	943	a.I1
Talaromyces	N	16S	IC1	Talaromyces wortmannii	AY157634	1511
Trichocoma	N	16S	IE	Trichocoma paradoxa	AB003943	516
Trichocoma	N	16S	IE	Trichocoma paradoxa	AB003944	516
Geosmithia	N	16S	U	Geosmithia argillacea	AB032112 AB032113	516
					AB032113 AB032114	943
					AB032114 AB032115 AB032118 AB032119	1506
					AB032108 AB032109	516
					AB032109 AB032110	943
					AB032110 AB032111	1506
					AB032116 AB032117	516
					AB032117 AB032118	943
			IC1	Geosmithia argillacea	AB013733	943		str. IFO 31128
					AB013734	1512		str. IFO 31128
					AB012951	943		str. IAM14726
					AB012951	1512		str. IAM14726
				Geosmithia viridis	AB033527	788
						943
						1506
			IE	Geosmithia viridis	AB033527	516
			IE	Geosmithia viridis	AB033527	1201		aligns well with 1199 IE introns -- error in GenBank entry?
Paecilomyces	N	16S	IC1	Paecilomyces pascua	AB033528	943
				Paecilomyces pascua	AB033528	1506
				Paecilomyces cicadae	AB086631	943
					AB085888	943
					AB085886	943
					AB085887	943
					AB086630	943
				Paecilomyces inflatus	AB099943	943
			IE	Paecilomyces pascua	AB033528	1199
				Paecilomyces sp. 97014	AB044633	989
				Paecilomyces cicadae	AB085888	1199
					AB085887	1199
					AB085886	1199
					AB086630	1199
					AB086631	1199
			U	Paecilomyces inflatus	AB099943	1083
			U	Paecilomyces inflatus	AB099943	1229
Penicillium	N	16S	IE	Penicillium argillaceum	AB033532	516
					AB033533	516
					AB033531	516
				Penicillium oblatum	AB033529	516
				Penicillium oblatum	AB033529	1199
				Penicillium radicum	AY256855	1199
				Penicillium sabulosum	AB033530	1199
			IC1	Penicillium argillaceum	AB033532	943
					AB033532	1506
					AB033533	943
					AB033533	1506
					AB033531	943
					AB033531	1506
				Penicillium oblatum	AB033529	788
						943
						1506
				Penicillium ochrochloron	AF178516	1511
				Penicillium pulvillorum	AF178527	1511
					AF178517	1511
					AF178526	1511
				Penicillium radicum	AY256855	788
				Penicillium sabulosum	AB033530	788
						943
						1506
			U	Penicillium sabulosum	AB033530	516
	M	23S	IA1	Penicillium marneffei	AY347307	2449
	M	23S	IA1	Penicillium urticae	D14567	2449
Penicillium chrysogenum complex	M	23S	IA1	Penicillium chrysogenum	U44726 D13859	2449
Sagenomella	N	16S	IE	Sagenomella diversispora	AB024588	516
			IE	Sagenomella diversispora	AB024589	516
			IC1	Sagenomella griseoviridis	AB024590	943
Ajellomyces	N	16S	IC1	Ajellomyces capsulatus	Z75305	943	a.I1	CBS213.53
					Z67752	943
					U57101	943	a.I1	FLs1
					U57102	943	a.I1	G184B
					U57103	943	a.I1	G186B
Paracoccidioides	M	16S	IIB	Paracoccidioides brasiliensis	AY955840	952
Mycocalicium	N	16S	IE	Mycocalicium albonigrum	L37736	516
Mycocalicium	N	16S	I	Mycocalicium albonigrum	L37736	1199
Geoglossum	N	16S	IE	Geoglossum nigritum	AY544694	516
Trichoglossum	N	16S	IE	Trichoglossum hirsutum	AY544697	989
		23S	I	Trichoglossum hirsutum	AY640976	798
		23S	I	Trichoglossum hirsutum	AY533014	798
Acarospora	N	16S	I	Acarospora bullata	AY640980	943
				Acarospora canadensis	AY640981	788
				Acarospora canadensis	AY640981	934
				Acarospora cervina	AY640982	788
				Acarospora cervina	AY640982	943
				Acarospora cf. dissipata	AF356655	788
				Acarospora cf. dissipata	AF356655	934
				Acarospora clauzadeana	AY640987	516
						788
						943
				Acarospora complanata	AF356653	516
						788
						943
				Acarospora hilaris	AY640983	516
						788
						934
						943
				Acarospora laqueata	AY640984	516
				Acarospora laqueata	AY640984	943
				Acarospora schleicheri	AY640986	516
		23S	I	Acarospora canadensis	AY640940	1094
				Acarospora cervina	AY640941	800
				Acarospora cf. dissipata	AF356656	1094
				Acarospora clauzadeana	AY640946	1090
				Acarospora complanata	AF356654	800
				Acarospora complanata	AF356654	1094
				Acarospora hilaris	AY640942	800
				Acarospora hilaris	AY640942	1094
				Acarospora laqueata	AY640943	800
				Acarospora schleicheri	AY640945	798
				Acarospora schleicheri	AY640945	1090
Acarospora macrospora	N	16S	I	Acarospora macrospora subsp. macrospora	AY640985	788
						934
						943
		23S	I	Acarospora macrospora subsp. macrospora	AY640944	1090
Glypholecia	N	16S	I	Glypholecia scabra	AY640991	516
						788
						943
		23S	I	Glypholecia scabra	AY640951	798
		23S	I	Glypholecia scabra	AY640951	1090
Pleopsidium	N	16S	I	Pleopsidium chlorophanum	AY316151	788
		16S	IC1	Pleopsidium chlorophanum	AY316151	943
		23S	I	Pleopsidium chlorophanum	AY640960	800
Polysporina	N	16S	I	Polysporina simplex	AY641000	516
						788
						934
						943
		23S	I	Polysporina simplex	AY640961	800
		23S	I	Polysporina simplex	AY640961	1090
Sarcogyne regularis	N	16S	I	Sarcogyne regularis var. regularis	AY641003	934
		23S	I	Sarcogyne regularis var. regularis	AY640964	800
		23S	I	Sarcogyne regularis var. regularis	AY640964	1094
Umbilicaria	N	16S	I	Umbilicaria flocculosa	AY648111	1052
				Umbilicaria yunnana	AY648118	940
				Umbilicaria yunnana	AY648118	1052
		23S	I	Umbilicaria vellea	AY645340	800
Biatoridium	N	16S	U	Biatoridium monasteriense	AY640988	297		spliceosomal
			U	Biatoridium monasteriense	AY640988	393		spliceosomal
			I	Biatoridium monasteriense	AY640988	934
		23S	I	Biatoridium monasteriense	AY640947	798
		23S	I	Biatoridium monasteriense	AY640947	1090
Lopezaria	N	16S	U	Lopezaria versicolor	AY584675	299		spliceosomal
						883		spliceosomal
						1071		spliceosomal
						1229		spliceosomal
		23S	U	Lopezaria versicolor	AY584651	1093		spliceosomal
Notolecidea	N	23S	I	Notolecidea subcontinua	AY532987	800
Arthrorhaphis	N	16S	U	Arthrorhaphis citrinella	AF279375	265		spliceosomal
Arthrorhaphis	N	23S	I	Arthrorhaphis citrinella	AF279376	798
Calicium	N	23S	U	Calicium abietinum	AY452501	898		spliceosomal
				Calicium abietinum	AY452501	1092		spliceosomal
				Calicium adaequatum	AY452503	777		spliceosomal
				Calicium adaequatum	AY452502	777		spliceosomal
				Calicium denigratum	AY452505	1092		spliceosomal
				Calicium montanum	AY453635	678		spliceosomal
				Calicium quercinum	AY453636	678		spliceosomal
				Calicium quercinum	AY453636	777		spliceosomal
				Calicium tricolor	AY453637	898		spliceosomal
			I	Calicium abietinum	AY452501	1025
				Calicium adaequatum	AY452502	800
					AY452502	1094
					AY452503	800
				Calicium adspersum	AY452504	1025
				Calicium glaucellum	AY453646	800
				Calicium glaucellum	AY453646	1090
				Calicium montanum	AY453635	1025
				Calicium tricolor	AY453637	1090
		16S	U	Calicium adspersum	AF242261	297		spliceosomal
		16S	I	Calicium tricolor	L37733	392
Cyphelium	N	23S	U	Cyphelium notarisii	AY453640	678		spliceosomal
				Cyphelium tigillare	AY453642	678		spliceosomal
					AY453642	704		spliceosomal
					AY453641	678		spliceosomal
					AY453641	704		spliceosomal
Tholurna	N	23S	I	Tholurna dissimilis	AY453644	798
Tholurna	N	23S	I	Tholurna dissimilis	AY453644	1025
Cetradonia	N	16S	I	Cetradonia linearis	AY648095	114
						497
						516
						989
						1199
Cladia	N	16S	I	Cladia retipora	U64681	989
Cladonia	N	16S	I	Cladonia arbuscula	AY170811	1516
					AY170815	1516
					AY170810	1516
					AY170812	1516
					AY170809	1516
					AY170806	1516
					AY170795	1516
					AY170817	1516
					AY170794	1516
					AY170814	1516
					AY170816	1516
					AY170793	1516
					AY170813	1516
					AY170807	1516
					AY170808	1516
				Cladonia gracilis	AY575024	788
					AY575025	788
					AY575023	788
					AY575022	788
					AY575029	940
					AY575031	940
					AY575030	940
					AY575028	940
				Cladonia grayi	Z14026	1046	a.I1
				Cladonia grayi	Z14026	1516	a.I1
				Cladonia merochlorophaea	Z14025	1046	a.I1	Formerly Cladonia merochlorophaea Asah
						1210	a.I1	Formerly Cladonia merochlorophaea Asah
						1389	a.I1	Formerly Cladonia merochlorophaea Asah
						1516	a.I1	Formerly Cladonia merochlorophaea Asah
				Cladonia mitis	AY170799	1516
					AY170800	1516
					AY170801	1516
					AY170798	1516
					AY170802	1516
					AY170803	1516
					AY170804	1516
					AY170805	1516
					AY170819	1516
					AY170820	1516
					AY170796	1516
					AY170797	1516
					AY170818	1516
				Cladonia rangiferina	AY575027	788
					AY575026	788
					AY575032	940
					AY575034	940
					AY575033	940
			U	Cladonia bellidiflora	U64682	330		spliceosomal
				Cladonia caroliniana	AY584664	330		spliceosomal
				Cladonia diversa	U64683	330		spliceosomal
				Cladonia portentosa	U64684	330		spliceosomal; synonym Cladina portentosa
			IE	Cladonia merochlorophaea	Z14025	1199		Formerly Cladonia merochlorophaea Asah
		23S	I	Cladonia caroliniana	AY584640	798
		23S	I	Cladonia rangiferina	AY533000	1025
Gymnoderma	N	16S	I	Gymnoderma coccocarpum	AF523362	114
						497		intron in variable region ca. E. coli position 497
						516
						788
						1046
						1199
						1210
			U	Gymnoderma coccocarpum	AF523362	1231		spliceosomal
Crocynia	N	16S	U	Crocynia pyxinoides	AY584677	1229		spliceosomal
Lecanora	N	16S	I	Lecanora allophana		940		LIT: Curr. Genet. 35(5):536-541 (1999).
				Lecanora dispersa	L37734	114	a.I1
						287	a.I1
						516	a.I1
						789	a.I1
						1046	a.I1
						1210	a.I1
						1516	a.I1
			U	Lecanora hybocarpa	DQ782883	330
		23S	I	Lecanora cenisia	AY532992	1025
				Lecanora cenisia	AY532992	1094
				Lecanora concolor	AY640954	1025
				Lecanora hybocarpa	DQ782910	1090
			U	Lecanora hybocarpa	DQ782910	678		spliceosomal
			U	Lecanora hybocarpa	DQ782910	776		spliceosomal
Rhizoplaca	N	16S	I	Rhizoplaca chrysoleuca	AY530888	114
						287
						788
						940
						1210
					AY530881	940
					AY530881	1210
					AY530880	940
					AY530880	1210
					AY530879	940
					AY530879	1210
					AY530882	940
					AY530882	1210
					AY509794	1516
					AY509793	1516
					AY509792	1516
					AY509795	1516
					AY509796	1516
				Rhizoplaca huashanensis	AY530885	114
						287
						516
						1516
				Rhizoplaca melanophthalma	AY509791	1516
				Rhizoplaca peltata	AY530887	516
				Rhizoplaca peltata	AY530887	940
				Rhizoplaca subdiscrepans	AY509805	1516
					AY509804	1516
					AY509789	1516
			U	Rhizoplaca chrysoleuca	AY530884	1229		spliceosomal
					AY530883	1229		spliceosomal
					AY530882	1229		spliceosomal
					AY530881	1229		spliceosomal
					AY530880	1229		spliceosomal
					AY530879	1229		spliceosomal
		23S	I	Rhizoplaca chrysoleuca	AY648104	798
				Rhizoplaca chrysoleuca	AY648104	1090
				Rhizoplaca huashanensis	AY648105	798
				Rhizoplaca huashanensis	AY648105	1094
Scoliciosporum	N	16S	I	Scoliciosporum umbrinum	AY641006	287
		16S	I	Scoliciosporum umbrinum	AY641006	516
		23S	I	Scoliciosporum umbrinum	AY640967	1090
Strangospora	N	16S	I	Strangospora pinicola	AY641010	788
					AY641010	935
					AY641011	788
					AY641011	935
		23S	I	Strangospora pinicola	AY640970	1025
		23S	I	Strangospora pinicola	AY640971	1025
Hypocenomyce	N	23S	I	Hypocenomyce scalaris	DQ782914	800
Mycoblastus	N	16S	U	Mycoblastus sanguinarius	DQ782879	674		spliceosomal
			U	Mycoblastus sanguinarius	DQ782879	1229		spliceosomal
			I	Mycoblastus sanguinarius	DQ782879	940
						1199		misannotated
						1389
		23S	U	Mycoblastus sanguinarius	DQ782915	678		spliceosomal
			I	Mycoblastus sanguinarius	DQ782915	1025
			I	Mycoblastus sanguinarius	DQ782915	1090
Ahtiana	N	16S	I	Ahtiana sphaerosporella	AF141859	1516
Arctocetraria	N	16S	I	Arctocetraria nigricascens	AF254628	1516
Asahinea	N	16S	I	Asahinea chrysantha	AF451767	1516
Asahinea	N	16S	I	Asahinea chrysantha	AF451766	1516
Bryoria	N	16S	I	Bryoria fuscescens	AF451736	1516
Cavernularia	N	16S	I	Cavernularia lophyrea	AF141367	1516		possibly IP 1521
Cavernularia	N	16S	I	Cavernularia lophyrea	AF115757	1516		possibly IP 1521
Cetraria	N	16S	I	Cetraria arenaria	AF115758	1516		possibly IP 1521
				Cetraria islandica	AF139035	0		IP 1516? (possibly 1521)
						940		LIT: Curr. Genet. 35(5):536-541 (1999).
					AF072225	1516		possibly IP 1521
				Cetraria nigricans	AF254629	1516
				Cetraria nigricans	AF254630	1516
				Cetraria odontella	AF228304	1516
					AF228285	1516
					AF228303	1516
Cetraria ericetorum	N	16S	I	Cetraria ericetorum subsp. ericetorum	AF139033	0		IP 1516? (possibly 1521)
				Cetraria ericetorum subsp. ericetorum	AF228290	1516		possibly IP 1521
				Cetraria ericetorum subsp. reticulata	AF139034	0		IP 1516? (possibly 1521)
Cetraria islandica	N	16S	I	Cetraria islandica subsp. antarctica	AF228293	1516
				Cetraria islandica subsp. antarctica	AF254627	1516
				Cetraria islandica subsp. crispiformis	AF228294	1516
				Cetraria islandica subsp. crispiformis	AF228295	1516
				Cetraria islandica subsp. islandica	AF228297	1516
					AF228299	1516
					AF228296	1516
					AF228298	1516
Dactylina	N	16S	I	Dactylina arctica	AF115760	1516		possibly IP 1521
Flavoparmelia	N	16S	I	Flavoparmelia caperata	AY584663	788
			I	Flavoparmelia caperata	AY584663	943
			U	Flavoparmelia caperata	AY584663	1229		spliceosomal
		23S	U	Flavoparmelia caperata	AY584639	678		spliceosomal
		23S	U	Flavoparmelia caperata	AY584639	775		spliceosomal
Hypogymnia	N	16S	I	Hypogymnia physodes		940		LIT: Curr. Genet. 35(5):536-541 (1999).
					AF141368	1516		possibly IP 1521
					AF115761	1516		possibly IP 1521
Letharia	N	16S	I	Letharia columbiana	AF221063	287
Melanelia	N	23S	U	Melanelia disjuncta	AJ421431	678		spliceosomal
			I	Melanelia disjuncta	AJ421431	1090
			I	Melanelia stygia	AJ421434	1094
		16S	I	Melanelia hepatizon	AF141369	1516		possibly IP 1521
Melanelixia	N	23S	U	Melanelixia fuliginosa	AJ421428	678		spliceosomal; synonym: Melanelia fuliginosa
			U	Melanelixia glabra	AJ421427	784		spliceosomal; synonym: Melanelia glabra
			I	Melanelixia fuliginosa	AJ421428	798		synonym: Melanelia fuliginosa
					AJ421428	1025		synonym: Melanelia fuliginosa
					AJ421435	1025		synonym: Melanelia fuliginosa
Melanohalea	N	23S	I	Melanohalea elegantula	AJ421437	1025		synonym: Melanelia elegantula
				Melanohalea elegantula	AJ421437	1090		synonym: Melanelia elegantula
				Melanohalea exasperata	AJ421438	1025		synonym: Melanelia exasperata
				Melanohalea exasperatula	AJ421436	1025		synonym: Melanelia exasperatula
				Melanohalea exasperatula	AJ421436	1090		synonym: Melanelia exasperatula
Menegazzia	N	23S	U	Menegazzia terebrata	AY584637	678		spliceosomal
Nephromopsis	N	16S	I	Nephromopsis ahtii	AF404123	1516		5' exon not present; genbank synonym: Tuckneraria ahtii
				Nephromopsis komarovii	AF451779	1516
				Nephromopsis laureri	AF451786	1516		genbank synonym: Tuckneraria laureri
				Nephromopsis stracheyi	AF451785	1516
Parmelia	N	16S	I	Parmelia ernstiae	AF412309	1516
				Parmelia ernstiae	AF412310	1516
				Parmelia saxatilis		940		LIT: Curr. Genet. 35(5):536-541 (1999).
					AF410835	1516
					AF410836	1516
					AF451771	1516
					AF451772	1516
					AF410837	1516
					AF451770	1516
					AF141370	1516		possibly IP 1521
Parmotrema	N	16S	U	Parmotrema tinctorum	AY584659	265		spliceosomal
			U	Parmotrema tinctorum	AY584659	299		spliceosomal
			I	Parmotrema tinctorum	AY584659	497		intron in variable region ca. E. coli position 497
						516
						943
						1046
		23S	U	Parmotrema tinctorum	AY584635	678		spliceosomal
			U	Parmotrema tinctorum	AY584635	784		spliceosomal
			I	Parmotrema tinctorum	AY584635	1090
Pseudephebe	N	16S	I	Pseudephebe pubescens	AF451738	1516
Punctelia	N	16S	U	Punctelia hypoleucites	AY584670	1229		spliceosomal
		16S	U	Punctelia rudecta	AY584660	1229		spliceosomal
		23S	U	Punctelia hypoleucites	AY584646	678		spliceosomal
		23S	U	Punctelia rudecta	AY584636	678		spliceosomal
Usnea	N	16S	I	Usnea filipendula		940		LIT: Curr. Genet. 35(5):536-541 (1999).
				Usnea hirta		940		LIT: Curr. Genet. 35(5):536-541 (1999).
				Usnea rigida		940		LIT: Curr. Genet. 35(5):536-541 (1999).
				Usnea subfloridana		940		LIT: Curr. Genet. 35(5):536-541 (1999).
Vulpicida	N	16S	I	Vulpicida juniperina		940		LIT: Curr. Genet. 35(5):536-541 (1999).
				Vulpicida pinastri	AF139031	1516		IP 1516? (possibly 1521)
				Vulpicida pinastri	AF072239	1516		possibly IP 1521
Xanthoparmelia	N	16S	U	Xanthoparmelia conspersa	AY584665	1229		spliceosomal
		16S	I	Xanthoparmelia semiviridis	AF451746	1516		synonym Chondropsis semiviridis
		23S	U	Xanthoparmelia pulla	AJ421433	678		synonym Neofuscelia pulla; spliceosomal
		23S	I	Xanthoparmelia pulla	AJ421433	1090		synonym Neofuscelia pulla
Amandinea	N	16S	I	Amandinea punctata	AJ549800	788
		16S	I	Amandinea punctata	AJ549800	1049
		23S	I	Amandinea punctata	AY773918	1094
		23S	I	Amandinea punctata	AY773934	2449
Anaptychia	N	23S	U	Anaptychia runcinata	AY773919	777		spliceosomal; unannotated
Anaptychia	N	23S	I	Anaptychia runcinata	AY773919	1094
Buellia	N	16S	I	Buellia aethalea	AJ549801	114
						788
						1516
		23S	I	Buellia aethalea	AY773927	1921
				Buellia alboatra	AY773915	1090
					AY773928	1921
					AY773933	2449
				Buellia geophila	AY773917	779
						1025
						1090
				Buellia griseovirens	AY773910	779
						798
						1025
				Buellia muriformis	AY773925	1025
				Buellia penichra	AY773936	2449
			IE	Buellia alboatra	AY773928	2066
			IE	Buellia geophila	AY787754	2563
			U	Buellia capitis-regum	AF457572	1929		spliceosomal
			U	Buellia muriformis	AF457571	2076		spliceosomal
Dimelaena	N	23S	IE	Dimelaena oreina	AY773940	2563
Diplotomma	N	16S	I	Diplotomma alboatrum	AJ549802	287
						300
						497		intron in variable region ca E.coli position 497
						516
						788
						940
						1199
						1210
						1516
				Diplotomma epipolium	AJ506969	287
						300
						516
						788
						940
						1199
						1210
						1516
		23S	I	Diplotomma alboatrum	AY452500	779
				Diplotomma alboatrum	AY452500	1090
				Diplotomma epipolium	AY773916	779
				Diplotomma epipolium	AY773916	1090
Hyperphyscia	N	16S	U	Hyperphyscia adglutinata	AJ549803	265		spliceosomal
			U	Hyperphyscia adglutinata	AJ549803	300		spliceosomal
			I	Hyperphyscia adglutinata	AJ549803	287
						516
						940
						1049
						1210
						1516
Phaeophyscia	N	16S	I	Phaeophyscia ciliata	AF224448	1506
					AF224448	1516
					AF224447	1506
					AF224447	1516
					AF224457	1506
					AF224457	1516
					AF224455	1506
					AF224455	1516
					AF224354	1506
					AF224354	1516
					AF224456	1506
					AF224456	1516
					AF224450	1506
					AF224450	1516
					AF224454	1506
					AF224454	1516
				Phaeophyscia constipata	AF224374	1506
				Phaeophyscia constipata	AF224374	1516
				Phaeophyscia endococcina	AF224444	1506
				Phaeophyscia endophoenicea	AF224445	1506
				Phaeophyscia hispidula	AY648103	287
						788
						1199
						1210
						1384
					AY303138	1506		5' end of intron missing from GB entry
					AY303138	1516
				Phaeophyscia nigricans	AF224375	1516
				Phaeophyscia orbicularis	AJ549804	114
						287
						299
					AJ549805	788
						943
						1199
						1210
						1384
						1506
						1516
					AF224451	1506
					AF224451	1516
					AF224452	1506
					AF224452	1516
					AF224459	1506
					AF224459	1516
					AF224460	1506
					AF224460	1516
					AF224449	1506
					AF224449	1516
					AF224453	1506
					AF224453	1516
					AF224458	1506
					AF224458	1516
				Phaeophyscia sciastra	AF224446	1506
			U	Phaeophyscia orbicularis	AJ549804	331		spliceosomal
		23S	I	Phaeophyscia orbicularis	AY773926	1090
Physcia	N	16S	I	Physcia adscendens	AF224422	1516
					AF224423	1516
					AF224430	1516
				Physcia aipolia	AY648097	114
						516
						788
						943
					AY648096	114
						516
						788
						943
					DQ782876	516
					DQ782876	788
					AY648101	516
						788
						943
					AY648099	788
						1049
						1199
						1210
					AY303132	1516
					AF224383	1516
					AF224392	1516
					AF224390	1516
					AF224396	1516
					AF224398	1516
					AF224393	1516
					AF224432	1516
					AF224397	1516
					AY303135	1516
					AF224431	1516
					AY303136	1516
					AF224391	1516
					AF224395	1516
					AY303133	1516
					AF224394	1516
				Physcia albinea	AF224433	1516
				Physcia alnophila	AF224382	1516
					AF224434	1516
					AF224381	1516
					AF224380	1516
				Physcia biziana	AF224417	1516
				Physcia caesia	AY648098	114
						516
						788
						1210
					AY648100	516
						788
						943
						1049
						1210
					AF224435	1516
					AY498690	1516
					AF224436	1516
					AF224386	1516
					AF224438	1516
					AF224389	1516
					AF224379	1516
					AF224387	1516
					AF224385	1516
					AY303131	1516
					AY303134	1516
					AF224437	1516
					AF224388	1516
AF224384	1516
Physcia dimidiata	AJ506970	516
	AJ506970	788
	AJ506970 AJ507615	1199		implicit from annotations
	AJ507615	1210
Physcia dubia	AF224401	1516
	AF224419	1516
	AF224418	1516
	AF224403	1516
	AF224420	1516
	AF224399	1516
	AF224402	1516
	AF224400	1516
	AF224439	1516
	AF224440	1516
	AF224413	1516
	AF224412	1516
	AF224411	1516
	AF224421	1516
Physcia leptalea	AF224429	1516
	AF224428	1516
	AF224441	1516
Physcia magnussonii	AF224377	1516
Physcia magnussonii	AF224376	1516
Physcia phaea	AF224378	1516
Physcia stellaris	AY648102	516
		788
		1049
		1210
	AY303137	1516
	AF224442	1516
	AY498689	1516
	AF224406	1516
	AF224404	1516
	AF224405	1516
	AF224407	1516
	AF224409	1516
	AF224408	1516
	AF224410	1516
Physcia undulata	AJ549806	114
		516
		788
		1389
		1506
		1516
U	Physcia aipolia	U64686	330		spliceosomal
	Physcia undulata	AJ549806	299		spliceosomal
			393		spliceosomal
			674		spliceosomal
			883		spliceosomal
			939		spliceosomal
23S	U	Physcia aipolia	AY773914	678		spliceosomal
				1054		spliceosomal
				1092		spliceosomal
			AY773929	1903		spliceosomal
			AY773929	1929		spliceosomal; unannotated
	I	Physcia aipolia	AY773914	779
			AY773914	798
			DQ782904	1090
			AY773929	1921
		Physcia stellaris	AY773912	779
				798
				1094
		Physcia tenella	AY773908	779
				798
				1094
	IE	Physcia aipolia	AY773929	2066
Physcia dimidiata	N	16S	I	Physcia dimidiata var. dimidiata	AF224415	1516
				Physcia dimidiata var. dimidiata	AF224416	1516
				Physcia dimidiata var. ornata	AF224414	1516
Physcia tenella	N	16S	I	Physcia tenella var. marina	AF224426	1516
				Physcia tenella var. marina	AF224424	1516
				Physcia tenella var. tenella	AF224427	1516
				Physcia tenella var. tenella	AF224425	1516
Physconia	N	16S	U	Physconia detersa	AJ240485	297		spliceosomal
					AJ240492	331		spliceosomal
					AJ240495	674		spliceosomal
					AJ240498	883		spliceosomal
					AJ240504	939		spliceosomal
					AJ240509	1229		spliceosomal
				Physconia distorta	AJ240484	297		spliceosomal
					AJ240491	331		spliceosomal
					AJ240494	674		spliceosomal
					AJ240497	883		spliceosomal
					AJ240502	939		spliceosomal
					AJ240508	1229		spliceosomal
				Physconia elegantula	AJ240487	298		spliceosomal
					AJ240489	331		spliceosomal
					AJ240501	939		spliceosomal
					AJ240507	1229		spliceosomal
				Physconia enteroxantha	AJ240486	297		spliceosomal
				Physconia grisea	AJ240503	939		spliceosomal
				Physconia kurokawae	AJ240496	674		spliceosomal
					AJ240499	883		spliceosomal
					AJ240505	939		spliceosomal
					AJ240510	1229		spliceosomal
				Physconia perisidiosa	AJ240488	298		spliceosomal
					AJ240490	331		spliceosomal
					AJ240512	1229		spliceosomal
				Physconia venusta	AJ240500	883		spliceosomal
					AJ240506	939		spliceosomal
					AJ240511	1229		spliceosomal
		23S	I	Physconia distorta	AY773913	798
						1025
						1094
					AY773930	1921
				Physconia enteroxantha	AY773909	779
						798
						1025
					AY773931	1921
					AF457573	1921
					AY773937	2449
				Physconia grisea	AY773921	779
						1025
						1094
				Physconia perisidiosa	AY773911	798
				Physconia perisidiosa	AY773911	1094
			U	Physconia enteroxantha	AF457573	1903		spliceosomal
			U	Physconia enteroxantha	AY773931	1903		spliceosomal
Rinodina	N	23S	I	Rinodina atrocinerea	AY773923	779
					AY773923	1094
					AY773932	1921
					AY773932	2069
				Rinodina capensis	AY773924	779
					AY773924	1025
					AY773938	2449
				Rinodina milvina	AY773922	779
						1025
						1094
				Rinodina tunicata	AF457568	800
					AY773920	800
						1025
						1094
					AF457569	1094
					AY773939	2449
			IE	Rinodina capensis	AY773938	2563
			IE	Rinodina tunicata	AY773939	2563
			U	Rinodina tunicata	AY773920	777		spliceosomal
					AY773920	1054		spliceosomal; misannotated
					AF457568	777		spliceosomal
					AF457569	1054		spliceosomal
		16S	I	Rinodina gennarii	AJ549808	287
						943
						1516
				Rinodina oxydata	AJ506971	114
						497
						516
						940
						1199
						1389
						1516
Tornabea	N	16S	I	Tornabea scutellifera	AJ549810	788
						943
						1199
						1516
Bellemerea	N	23S	U	Bellemerea subsorediza	AY532983	784		spliceosomal
Immersaria	N	23S	I	Immersaria usbekica	AY532985	1090
Koerberiella	N	23S	I	Koerberiella wimmeriana	AY532986	798
Porpidia	N	23S	I	Porpidia albocaerulescens	AF356676	1025
				Porpidia albocaerulescens	AY532938	1025
				Porpidia carlottiana	AY532940	1090
		16S	U	Porpidia crustulata	L37735	514		spliceosomal
Porpidia albocaerulescens	N	23S	I	Porpidia albocaerulescens var. polycarpiza	AY532937	1025
Protoblastenia	N	16S	I	Protoblastenia calva	AY548822	788
				Protoblastenia calva	AY548821	788
				Protoblastenia calvella	AY425647	1210
				Protoblastenia calvella	AY425646	1210
				Protoblastenia laeta	AY548818	1210
					AY425653	1210
					AY425652	1210
					AY425651	1210
					AY425650	1210
				Protoblastenia lilacina	AY425629	1210
				Protoblastenia rupestris	AY548820	788
				Protoblastenia siebenhaariana	AY425627	1199
			U	Protoblastenia siebenhaariana	AY425627	1229		spliceosomal
		23S	I	Protoblastenia rupestris	AY533008	798
		23S	I	Protoblastenia rupestris	AY533008	1025
Psora	N	16S	U	Psora crenata	AY425634	1229		spliceosomal
Bacidia	N	23S	U	Bacidia rosella	AY300829	776		spliceosomal
			U	Bacidia schweinitzii	DQ782911	1098		spliceosomal
			I	Bacidia rosella	AY300829	798
			I	Bacidia schweinitzii	DQ782911	798
		16S	U	Bacidia schweinitzii	DQ782884	265		spliceosomal
						299		spliceosomal
						330		spliceosomal
			I	Bacidia schweinitzii	DQ782884	287
						497		intron in variable region ca. E. coli position 497
						516
Biatora	N	16S	I	Biatora efflorescens	AJ247554	1516
				Biatora fallax	AJ247526	1516
					AJ247527	1516
					AJ247548	1516
				Biatora helvola	AJ247516	1516
					AJ247514	1516
					AJ247518	1516
					AJ247546	1516
					AJ247556	1516
					AJ247557	1516
					AJ247517	1516
					AJ247515	1516
					AJ247541	1516
					AJ247544	1516
					AJ247545	1516
					AJ247542	1516
					AJ247549	1516
					AJ247550	1516
					AJ247543	1516
					AJ247547	1516
				Biatora ocelliformis	AJ247521	1516
				Biatora ocelliformis	AJ247520	1516
				Biatora pseudohelvola	AJ247571	1516
					AJ247572	1516
					AJ247558	1516
					AJ247570	1516
				Biatora sphaeroidiza	AJ247552	1516
					AJ247551	1516
					AJ247553	1516
				Biatora toensbergii	AJ247519	1516
Stereocaulon	N	16S	U	Stereocaulon paschale	AF279412	330		spliceosomal
				Stereocaulon taeniarum	U64687	330		spliceosomal
				Stereocaulon tomentosum	U64688	330		spliceosomal
Fuscidea	N	16S	U	Fuscidea lygaea	AY640990	393		spliceosomal
Fuscidea	N	23S	I	Fuscidea lygaea	AY640950	1090
Pannaria	N	16S	IE	Pannaria conoplea	AY424260	516
Psoroma	N	16S	U	Psoroma hypnorum	AY424261	299		spliceosomal
			I	Psoroma hypnorum	AY424261	497		intron in variable region ca E.coli position 497
			IE	Psoroma hypnorum	AY424261	516		misannotated
Lobaria	N	16S	U	Lobaria pulmonaria	AF183935	393		spliceosomal
			I	Lobaria pulmonaria	AF183935	497		in variable region near E. coli position 497
			IE	Lobaria pulmonaria	AF183935	516
		23S	U	Lobaria pulmonaria	AF183934	678		spliceosomal
				Lobaria pulmonaria	AF401965	678		spliceosomal
				Lobaria quercizans	AF279397	678		spliceosomal
Pseudocyphellaria	N	16S	IC1	Pseudocyphellaria crocata	AY424253	943		misannotated as two introns
Nephroma	N	16S	U	Nephroma arcticum	AY424262	393		spliceosomal
			IE	Nephroma arcticum	AY424262	516		misannotated
			I	Nephroma parile	AY584680	516
		23S	I	Nephroma arcticum	AF286828	800
Massalongia	N	16S	IE	Massalongia carnosa	AY424265	516		misannotated
Massalongia	N	23S	I	Massalongia carnosa	AF286827	800
Letrouitia	N	16S	U	Letrouitia domingensis	AY584672	297		spliceosomal
						330		spliceosomal
						883		spliceosomal
						1229		spliceosomal
		23S	U	Letrouitia domingensis	AY584648	677		spliceosomal
Megalospora	N	16S	U	Megalospora tuberculosa	AY584674	674		spliceosomal
Megalospora	N	23S	U	Megalospora tuberculosa	AY584650	801		spliceosomal
Caloplaca	N	23S	U	Caloplaca flavorubescens	AY300831	782		spliceosomal
Caloplaca	N	16S	I	Caloplaca xanthostigmoidea	AJ535286	943
Fulgensia	N	16S	I	Fulgensia bracteata	AJ535288	943
Fulgensia	N	16S	U	Fulgensia bracteata	AJ535288	1229		spliceosomal
Teloschistes	N	16S	I	Teloschistes contortuplicatus	AJ421258	1506
				Teloschistes exilis	AY584671	943
				Teloschistes lacunosus	AF098405	1506
					AF098406	1506
					AJ421260	1506
					AJ421259	1506
				Teloschistes villosus	AF098408	1506
					AJ421263	1506
					AJ421262	1506
					AJ421261	1506
					AF098407	1506
			U	Teloschistes exilis	AY584671	298		spliceosomal
						330		spliceosomal
						393		spliceosomal
						675		spliceosomal
Xanthoria	N	16S	IC1	Xanthoria andina	AJ535290	943
Xanthoria	N	16S	I	Xanthoria elegans	AY641017	788
Anzina	N	23S	I	Anzina carneonivea	AY212829	798
Placynthiella	N	23S	U	Placynthiella icmalea	AY212846	678		spliceosomal
						777		spliceosomal
						829		spliceosomal
Trapelia	N	23S	I	Trapelia chiodectonoides	AY212847	798
Trapeliopsis	N	23S	U	Trapeliopsis granulosa	AF279415	858		spliceosomal
				Trapeliopsis percrenata	AF279302	678		spliceosomal
				Trapeliopsis percrenata	AF279302	858		spliceosomal
			I	Trapeliopsis granulosa	AF279415	1094
Baeomyces	N	16S	I	Baeomyces placophyllus	AF356657	788
Baeomyces	N	16S	I	Baeomyces placophyllus	AF356657	989
Coenogonium	N	23S	I	Coenogonium leprieurii	AF465442	798
			I	Coenogonium leprieurii	AF465442	1090
			U	Coenogonium leprieurii	AF465442	830		spliceosomal
						1054		spliceosomal
						1098		spliceosomal
				Coenogonium luteum	AF279387	1091		spliceosomal; synonym Dimerella lutea
		16S	IE	Coenogonium luteum	AF279386	516		synonym Dimerella lutea
			I	Coenogonium luteum	AF279386	788		synonym Dimerella lutea
			U	Coenogonium luteum	AF279386	882		spliceosomal; synonym Dimerella lutea
			U	Coenogonium luteum	AF279386	939		spliceosomal; synonym Dimerella lutea
Echinoplaca	N	16S	I	Echinoplaca strigulacea	DQ782878	788
		16S	I	Echinoplaca strigulacea	DQ782878	943
		23S	U	Echinoplaca strigulacea	DQ782905	674		spliceosomal
Chroodiscus	N	23S	U	Chroodiscus coccineus	AF465441	1054		spliceosomal
Diploschistes	N	16S	U	Diploschistes scruposus	AF279388	883		spliceosomal
Graphina	N	16S	U	Graphina poitiaei	AF465459	1057		spliceosomal
Graphis	N	16S	U	Graphis scripta	AF038878	337		spliceosomal
Ocellularia	N	23S	U	Ocellularia alborosella	AF465452	1024		spliceosomal
Ocellularia	N	23S	U	Ocellularia alborosella	AF465452	1093		spliceosomal
Phaeographina	N	23S	U	Phaeographina chrysocarpa	AF465448	784		spliceosomal
Gyalecta	N	23S	U	Gyalecta herrei	AF465449	978		spliceosomal
				Gyalecta jenensis	AF279391	678		spliceosomal
						711		spliceosomal
						978		spliceosomal
					AF465450	678		spliceosomal
						711		spliceosomal
						783		spliceosomal
						978		spliceosomal
				Gyalecta thelotremella	AF465455	711		spliceosomal
				Gyalecta thelotremella	AF465455	783		spliceosomal
			I	Gyalecta hypoleuca	AF465453	798
				Gyalecta hypoleuca	AF465453	1090
				Gyalecta jenensis	AF465450	798
						1025
						1094
					AF279391	1025
					AF279391	1094
				Gyalecta thelotremella	AF465455	798
Petractis	N	16S	I	Petractis clausa	AF356661	788
				Petractis clausa	AF356661	989
				Petractis luetkemuelleri	AF465461	1049
			U	Petractis luetkemuelleri	AF465461	330		spliceosomal
		23S	U	Petractis luetkemuelleri	AF465454	776		spliceosomal
Porina	N	23S	U	Porina guentheri	AF279405	678		spliceosomal
			I	Porina guentheri	AF279405	798
			I	Porina guentheri	AF279405	1090
Acarosporina	N	16S	I	Acarosporina microspora	AY584667	1199
Acarosporina	N	23S	I	Acarosporina microspora	AY584643	1090
Conotrema	N	16S	IE	Conotrema populorum	U86582	989
Ostropa	N	16S	I	Ostropa barbara	AY584666	298
						516
						943
						1199
		23S	I	Ostropa barbara	AY584642	798
Stictis	N	23S	U	Stictis radiata	AF356663	681		spliceosomal
			U	Stictis radiata	AF356663	824		spliceosomal
			I	Stictis radiata	AF356663	798
			I	Stictis radiata	AF356663	1094
Hymenelia	N	16S	U	Hymenelia epulotica	AF279393	265		spliceosomal
				Hymenelia epulotica	AF279393	393		spliceosomal
				Hymenelia lacustris	AY640992	265		spliceosomal
				Hymenelia lacustris	AY640992	331		spliceosomal
			I	Hymenelia epulotica	AF279393	497		in variable region near E. coli position 497
			IE	Hymenelia epulotica	AF279393	516
			IC1	Hymenelia epulotica	AF279393	943
		23S	I	Hymenelia epulotica	AF279394	798
				Hymenelia lacustris	AY533006	798
					AY533006	1090
					AY640953	798
			U	Hymenelia lacustris	AY640953	678		spliceosomal
					AY533006	678		spliceosomal
					AF457570	2445		spliceosomal; synonym: Ionaspis lacustris
Tremolecia	N	23S	U	Tremolecia atrata	AY533007	678		spliceosomal
			U	Tremolecia atrata	AY533007	784		spliceosomal
			I	Tremolecia atrata	AY533007	800
			I	Tremolecia atrata	AY533007	1094
Dibaeis	N	23S	U	Dibaeis baeomyces	AF279385	775		spliceosomal
Dibaeis	N	23S	U	Dibaeis baeomyces	AF279385	787		spliceosomal
Ochrolechia	N	16S	U	Ochrolechia frigida	AF279402	330		spliceosomal
				Ochrolechia juvenalis	AY640997	330		spliceosomal
				Ochrolechia parella	AF274109	330		spliceosomal
			IE	Ochrolechia parella	AF274109	1199
Pertusaria	N	16S	U	Pertusaria amara	AF274104	333		spliceosomal
		16S	U	Pertusaria trachythallina	U64685	330		spliceosomal
		23S	U	Pertusaria coccodes	AF279295	776		spliceosomal
				Pertusaria hymenea	AF279297	776		spliceosomal
				Pertusaria kalelae	AF279298	776		spliceosomal
				Pertusaria kalelae	AF279298	786		spliceosomal
				Pertusaria lactescens	AY568004	784		spliceosomal
				Pertusaria oculata	AY568005	767		spliceosomal
				Pertusaria oculata	AY568005	1100		spliceosomal
				Pertusaria pupillaris	AY568007	775		spliceosomal
				Pertusaria tejocotensis	AF279301	780		spliceosomal
			I	Pertusaria hymenea	AF279297	798
				Pertusaria kalelae	AF279298	798
				Pertusaria oculata	AY568005	798
Peltula	N	16S	IE	Peltula umbilicata	DQ782887	516		misannotated
			IE	Peltula umbilicata	AF356688	516		unannotated
			IC1	Peltula umbilicata	DQ782887	943
		23S	IC1	Peltula umbilicata	AF356689	798
Arthonia	N	16S	IE	Arthonia dispersa	AY571379	516
Arthonia	N	16S	U	Arthonia lapidicola		1514		LIT: Curr. Genet. 29(6):582-586 (1996).
Lecanactis	N	16S	IE	Lecanactis abietina	AY548805	516
Lecanactis	N	23S	U	Lecanactis abietina	AY548812	1102		spliceosomal
Roccella	N	16S	U	Roccella boergesenii	AY548807	299		spliceosomal
				Roccella boergesenii	AY548807	330		spliceosomal
				Roccella canariensis	AF110344	299		spliceosomal
					AF110344	330		spliceosomal
					AF110345	299		spliceosomal
					AF110345	330		spliceosomal
					AF110343	299		spliceosomal
						330		spliceosomal
						393		spliceosomal
					AF110342	299		spliceosomal
						330		spliceosomal
						393		spliceosomal
				Roccella fuciformis	AY584678	393		spliceosomal
				Roccella montagnei	AF110340	393		spliceosomal
				Roccella montagnei	AF110341	393		spliceosomal
				Roccella tuberculata	AF110347	299		spliceosomal
					AF110347	330		spliceosomal
					AF110346	299		spliceosomal
					AF110346	330		spliceosomal
					AF110348	299		spliceosomal
					AF110348	330		spliceosomal
					AF110350	299		spliceosomal
					AF110350	330		spliceosomal
					AF110351	299		spliceosomal
						330		spliceosomal
						393		spliceosomal
			IE	Roccella boergesenii	AY548807	516
				Roccella boergesenii	AY548807	1199
				Roccella canariensis	AF110344	516
					AF110345	516
					AF110343	516
					AF110342	516
				Roccella fimbriata	AF110339	516
				Roccella tuberculata	AF110350	516
				Roccella tuberculata	AF110351	516
			IC1	Roccella boergesenii	AY548807	943
		23S	I	Roccella boergesenii	AY548814	798
		23S	U	Roccella boergesenii	AY548814	1102		spliceosomal
Simonyella	N	16S	I	Simonyella variegata	AY584669	788
			U	Simonyella variegata	AY584669	990		spliceosomal; intron in variable region ca. E. coli position 990
						1082		spliceosomal
						1221		spliceosomal
Acrospermum	N	16S	IE	Acrospermum compressum	AF242257	516
Acrospermum	N	16S	IE	Acrospermum compressum	AF242257	989
Kirschsteiniothelia	N	16S	IC1	Kirschsteiniothelia aethiops	AY016344	943
Hysteropatella	N	16S	IE	Hysteropatella clavispora	AY541483	1199
Venturia	N	16S	IC1	Venturia inaequalis	AF065831	1506		str. 685BF
					U63627	1506		strain TR50
					U63624	1506		strain D94 07-1
					U63628	1506		strain X94 01-2
					U63625	1506		strain RACE 4
					U63626	1506		strain TR141
Dothidea	N	16S	IC1	Dothidea ribesia	AY016343	943
Elsinoe	N	16S	IC1	Elsinoe ampelina	AY826764	1506		misannotated
					AY826763	1506		misannotated
					AY826762	1506		misannotated
Delitschia	N	16S	IE	Delitschia didyma	AF242264	516
			IC1	Delitschia didyma	AF242264	788
			IC1	Delitschia didyma	AF242264	943
Dendryphiopsis	N	16S	IE	Dendryphiopsis atra	AF053731	1199
Dendryphiopsis	N	16S	I	Dendryphiopsis atra	AF053731	1506
Leptosphaeria	N	16S	IC1	Leptosphaeria korrae	AF486626	1506
Phaeosphaeria	N	16S	IC1	Phaeosphaeria avenaria	AY544725	943
Lewia	N	16S	IE	Lewia infectoria	AY154692	1199
					AY154690	1199
					AY154688	1199
Cenococcum	N	16S	IC1	Cenococcum geophilum	Z48525	1506
					Z48534	1506
					Z48526	1506
					Z48536	1506
					Z48533	1506	a.I1
					Z11998	1506
					Z48529	1506
					Z48521	1506
					Z48537	1506
					Z48527	1506
Pyxidiophora	N	16S	IC1	Pyxidiophora arvernensis	U43339	943
Neofabraea	N	16S	IC1	Neofabraea malicorticis	AY544706	943
Pezicula	N	16S	IC1	Pezicula cinnamomea	AF141185	1506
Pezicula	N	16S	IC1	Pezicula cinnamomea	AF141184	1506
Bisporella	N	16S	IC1	Bisporella citrina	AF335454	1506
Chlorociboria	N	16S	IC1	Chlorociboria aeruginosa	AF292087	943
Chlorociboria	N	16S	U	Chlorociboria aeruginosa	AF292087	1228		spliceosomal
Neocudoniella	N	16S	IC1	Neocudoniella radicella	AY524843	943
Rhizoscyphus ericae complex	N	16S	IE	Rhizoscyphus ericae	AY762620	516
			IE	Rhizoscyphus ericae	AF462168	516		synonym Hymenoscyphus ericae
			IC1	Rhizoscyphus ericae	AY762621	788
					AY762621	943
					AY228753	943		synonym Hymenoscyphus ericae
					AY762620	943
					AY394907	1506		synonym Hymenoscyphus ericae
					U06868	1506		synonym Hymenoscyphus ericae
		23S	IC1	Rhizoscyphus ericae	U06869	798		synonym Hymenoscyphus ericae
Meliniomyces	N	16S	IC1	Meliniomyces variabilis	AY838789	1507
Meliniomyces	N	16S	IC1	Meliniomyces variabilis	AY838785	1507
Naemacyclus	N	16S	I	Naemacyclus niveus	AF013223	1506		synonym Cyclaneusma niveum
Fabrella	N	23S	IC1	Fabrella tsugae	AF356694	798
Rhabdocline	N	16S	IC1	Rhabdocline parkeri	AF462426	1506
					AF462428	1506
					AF462427	1506
Hyphodiscus	N	16S	IC1	Hyphodiscus hymeniophilus	DQ227258	788
Hyphodiscus	N	16S	IC1	Hyphodiscus hymeniophilus	DQ227258	943
Lachnum	N	16S	IC1	Lachnum hyalopus	AY120858	943
Lachnum	N	16S	IC1	Lachnum sclerotii	AY120860	943
Botryotinia	N	23S	IC1	Botryotinia porri	AJ226077	798		anamorph: Botrytis porri
Dumontinia	N	23S	IC1	Dumontinia ulmariae	AJ226079	798
Encoelia	N	23S	IC1	Encoelia fascicularis	AJ226080	798
Grovesinia	N	23S	IC1	Grovesinia pyramidalis	AJ226081	798
Monilinia	N	16S	IC1	Monilinia fructicola	AY544724	943
					AF257088	943
					AF257089	943
					AF257090	943
					AF257091	943
					AF257092	943
					AF257093	943
					AF257094	943
					AF010505	943
					Y14211	943	a.I1
Myriosclerotinia	N	16S	IC1	Myriosclerotinia caricis-ampullaceae	AJ226069	788
				Myriosclerotinia curreyana	AJ226070	788
				Myriosclerotinia curreyana	AJ226071	788
				Myriosclerotinia dennisii	AJ226072	788		strain: 453.2
				Myriosclerotinia scirpicola	AJ226073	788
					AJ226074	788
					AJ226075	788
					AJ226076	788
		23S	IC1	Myriosclerotinia caricis-ampullaceae	AJ226082	798
				Myriosclerotinia ciborium	AJ226083	798
				Myriosclerotinia ciborium	AJ226084	798
				Myriosclerotinia curreyana	AJ226085	798
				Myriosclerotinia curreyana	AJ226086	798
				Myriosclerotinia luzulae	AJ226087	798
Sclerotinia	M	16S	IC2	Sclerotinia sclerotiorum	U07553	570	a.I1
	N	23S	IC1	Sclerotinia sclerotiorum	AY187067	798
					AY187079	798
					AJ226088	798		str. 926.P
					AJ226089	798	a.I1	str. 1837.P
				Sclerotinia tetraspora	AJ226092	798		str. 2006.1
					AJ226091	798		str. 1993.1
					AJ226090	798		str. 642.1
		16S	IC1	Sclerotinia trifoliorum	AY187069	943
					AY187069	1506
					AY187072	943
					AY187072	1506
					AY187075	943
					AY187077	943
					AY187076	1506
			IE	Sclerotinia trifoliorum	AY187075	1199
Botrytis	N	23S	IC1	Botrytis tulipae	AJ226078	798
Cadophora	N	16S	IC1	Cadophora finlandica	AF486119	1506		synonym Phialophora finlandia; 5' end of intron not present
					AJ534704	1506		synonym Phialophora finlandia
					AY394885	1506
Cadophora gregata	N	16S	IC1	Cadophora gregata f. sp. adzukicola	AF056487	1506		P5c missing; synonym Phialophora gregata f. sp. adzukicola
Phialocephala fortinii complex	N	16S	IC1	Phialocephala fortinii	AY524846	943
					AY524846	1507
					AY078135	1507		incomplete 5' end
					AY078139	1507		incomplete 5' end
Phialocephala	N	16S	IC1	Phialocephala sphaeroides	AY524844	788
						943
						1507
Geomyces pannorum	N	16S	IC1	Geomyces pannorum var. pannorum	AB015785	943
Geomyces	N	16S	IC1	Geomyces sp. C239/10G	AY345347	1506
Geomyces	N	16S	IC1	Geomyces sp. T489/9b	AY345348	1506
Connersia	N	16S	IC1	Connersia rilstonii	AF096174	943
Connersia	N	16S	IC1	Connersia rilstonii	AF281667	1506
Spathularia	N	16S	I	Spathularia flavida		943		LIT: Mol. Biol. Evol. 12(2):208-218.
Coccomyces	N	16S	IC1	Coccomyces dentatus	AY544701	943
Coccomyces	N	16S	I	Coccomyces dentatus	AY544701	1049
Lophodermium	N	16S	I	Lophodermium conigenum	AY183364	1516
				Lophodermium pinastri	AF462434	1516
				Lophodermium seditiosum	AF462435	1516
				Lophodermium sp. SL1	AB247944	1516
Tryblidiopsis	N	16S	I	Tryblidiopsis pinastri	DQ471035	297		unannotated
						516		unannotated
						788		unannotated
Rhexocercosporidium	N	16S	IE	Rhexocercosporidium sp. DSE48.1b	AJ864396	516
			IE	Rhexocercosporidium sp. DSE48.1b	AJ864396	989
			IC1	Rhexocercosporidium sp. DSE48.1b	AJ864396	943
unclassified Leotiomycetes	N	16S	IC1	leotiomycete sp. G2-5 R322	AY382647	943
				leotiomycete sp. G21-24-A14	AY190279	943
				leotiomycete sp. G21-24-A201	AY190274	943
				leotiomycete sp. G21-24-A204	AY190275	296		tentative subclass assignment
				leotiomycete sp. G21-24-A204	AY190275	943
				leotiomycete sp. G21-24-KI129	AY190276	943
				leotiomycete sp. G21-24-PU162	AY190277	296		tentative subclass assignment
				leotiomycete sp. G21-24-RU19	AY190278	943
				mitosporic fungus sp. JCM 8069	AB038422	1506		synonym anamorphic fungus sp. JCM 8069
			IE	leotiomycete sp. G21-24-A14	AY190279	516
				leotiomycete sp. G21-24-A201	AY190274	516
				leotiomycete sp. G21-24-A201	AY190274	1199
				leotiomycete sp. G21-24-A204	AY190275	516
				leotiomycete sp. G21-24-A204	AY190275	1199
				leotiomycete sp. G21-24-KI129	AY190276	516
				leotiomycete sp. G21-24-KI129	AY190276	989
				leotiomycete sp. G21-24-PU162	AY190277	516
						989
						1199
				leotiomycete sp. G21-24-RU19	AY190278	516
				leotiomycete sp. G21-24-RU19	AY190278	1199
Bionectria	N	16S	IC1	Bionectria ochroleuca	AB003950 AB013739	943		synonym Nectria ochroleuca
					AB013010	943		synonyms Nectria aureofulva, Bionectria aureofulva
					AB012952	943		synonym Nectria ochroleuca
			IE	Bionectria ochroleuca	AB013010	1199		synonyms Nectria aureofulva, Bionectria aureofulva
			IE	Bionectria ochroleuca	AB012952	1199		synonym Nectria ochroleuca
Hydropisphaera	N	16S	IE	Hydropisphaera erubescens	AY545722	1199
Mycoarachis	N	16S	IE	Mycoarachis inversa	AB013735	516		str. ATCC 22107
			IE	Mycoarachis inversa	AB012953	516		str. IAM 14639
			IC1	Mycoarachis inversa	AB013736	943		str. ATCC 22107
			IC1	Mycoarachis inversa	AB012953	943		str. IAM 14639
Nigrosabulum	N	16S	IC1	Nigrosabulum globosum	AF096180	943
Ochronectria	N	16S	IC1	Ochronectria calami	AY489685	943
Claviceps	N	16S	IE	Claviceps africana	AF281176	1199
				Claviceps panicoidearum	AB255604	1199		unannotated
				Claviceps panicoidearum	AB255605	1199		unannotated
				Claviceps sorghicola	AF281177	1199
Epichloe	N	16S	IE	Epichloe typhina	AB105953	1199
Epichloe	N	16S	IE	Epichloe typhina	AB105952	1199
Metarhizium	M	23S	IA1	Metarhizium anisopliae	AY884128	2449
Metarhizium	N	16S	IC1	Metarhizium anisopliae	AF487276	943
Metarhizium flavoviride	N	16S	IE	Metarhizium flavoviride var. minus	AF280632	1199
Neotyphodium	N	16S	IE	Neotyphodium uncinatum	AB102783	1199
Tolypocladium	N	16S	IE	Tolypocladium inflatum	AB044634	1199
					AB255606	1199		unannotated
					AY245674	1199
Cordyceps	N	16S	IC1	Cordyceps bassiana	AB079609	943		GenBank anamorph Beauveria bassiana
					AF398397	943		GenBank anamorph Beauveria bassiana
					AF398400	943		GenBank anamorph Beauveria bassiana
					AF398398	943		GenBank anamorph Beauveria bassiana
					AF479737	943		GenBank anamorph Beauveria bassiana
					AF398396	943		GenBank anamorph Beauveria bassiana
					AF398399	943		GenBank anamorph Beauveria bassiana
					AB079125	943		GenBank anamorph Beauveria bassiana
					AF479736	943		GenBank anamorph Beauveria bassiana
					AF464942	943		GenBank anamorph Beauveria bassiana
					AB237657	943
					AF464939	943		GenBank anamorph Beauveria bassiana
					AF280633	943		GenBank anamorph Beauveria bassiana
					AF464941	943		GenBank anamorph Beauveria bassiana
					AF398395	943		GenBank anamorph Beauveria bassiana
					AF479738	943		GenBank anamorph Beauveria bassiana
					AF464940	943		GenBank anamorph Beauveria bassiana
					AB079608	943		GenBank anamorph Beauveria bassiana
				Cordyceps brongniartii	AB258368	943
					AB237658	943		unannotated
					AB106649	943
					AF479735	943
					AF398402	943
					AB027335	943
					AY282746	943
					AF398401	943
				Cordyceps cardinalis	AB237660	943		unannotated
				Cordyceps kyushuensis	AY465958	943
				Cordyceps militaris	AB255603	943		unannotated
					AB027333	943
					AF327392	943
					AB070374	943
					AB233336	943
					AB084156	943
					AB070373	943
					AB070375	943
				Cordyceps pruinosa	AB044629	943
				Cordyceps pseudomilitaris	AF327394	943
				Cordyceps sp. 97003	AB027329	943
				Cordyceps sp. 97005	AB044630	943
				Cordyceps sp. 97009	AB027332	943
				Cordyceps tuberculata	AF327401	943
			IE	Cordyceps bassiana	AB237657	1199
					AB079609	1199		GenBank anamorph Beauveria bassiana
					AB079125	1199		GenBank anamorph Beauveria bassiana
				Cordyceps brongniartii	AB258367	1199
					AB258368	1199
					AB237658	1199		unannotated
					AB106649	1199
					AB027335	1199
				Cordyceps cardinalis	AB237660	1199		unannotated
				Cordyceps kanzashiana	AB027325	516
						989
						1199
				Cordyceps kyushuensis	AY465958	1199
				Cordyceps militaris	AB070374	1199
					AF327392	1199
					AB084156	1199
					AB027333	1199
					AB233336	1199
					AB070373	1199
					AB070375	1199
				Cordyceps prolifica	AB027324	516
						989
1199
Cordyceps pruinosa	AB044629	1199
Cordyceps ramosopulvinata	AB027326	516
		989
		1199
Cordyceps sp. 97003	AB027329	516
Cordyceps sp. 97003	AB027329	989
Cordyceps sp. 97005	AB044630	1199
Cordyceps sp. 97009	AB027332	1199
Cordyceps sp. BCMU CN03	AB233335	1199
Cordyceps takaomontana	AB044631	1199
U	Cordyceps prolifica	AB027324 AB027370	1229		spliceosomal
23S	IC1	Cordyceps bassiana	AB044638	1921		GenBank anamorph Beauveria bassiana
		Cordyceps kanzashiana	AB044639	1921
		Cordyceps kanzashiana	AB044639	2449
		Cordyceps prolifica	AB044640	1921
		Cordyceps prolifica	AB044640	2449
		Cordyceps sp. 97009	AB044641	1921
		Cordyceps sp. 97009	AB044641	2449
	IE	Cordyceps brongniartii		2563		LIT: Curr. Genet. 27(1):38-45 (1994).
		Cordyceps kanzashiana	AB044639	2066
		Cordyceps kanzashiana	AB044639	2563
		Cordyceps prolifica	AB044640	2066
		Cordyceps prolifica	AB044640	2563
		Cordyceps sp. 97009	AB044641	2066
		Cordyceps sp. 97009	AB044641	2563
	U	Cordyceps prolifica	AB044640	1849		spliceosomal
M	16S	IC2	Cordyceps kanzashiana	AB027347	569
		IC2	Cordyceps sp. 97003	AB027352	569
		IIB	Cordyceps ramosopulvinata	AB027348	952
		IIB	Cordyceps sp. 97009	AB027356	952
Torrubiella	M	23S	IA1	Torrubiella confragosa	AF487277	2449		synonym Verticillium lecanii
	N	16S	IC1	Torrubiella flava	AB100609	943
	N	16S	IE	Torrubiella flava	AB100609	1199
Gibellula	N	16S	IC1	Gibellula formosana	AB100360	943
Isaria	N	16S	IC1	Isaria japonica	AB016607	943
Hypocrea	N	16S	IC1	Hypocrea citrina	AY544693	943
Hypocrea	M	23S	IA1	Hypocrea jecorina	AF447590	2449
Bulbithecium	N	16S	IE	Bulbithecium hyalosporum	AF096172	516
Bulbithecium	N	16S	IE	Bulbithecium hyalosporum	AF281666	1199
Neonectria	N	16S	IE	Neonectria galligena	Y16424	0		synonym Nectria galligena
					Y16423	0		3' end uncertain; synonym Nectria galligena
					Y16422	0		synonym Nectria galligena
Melanopsamma	N	16S	U	Melanopsamma pomiformis	AY489677	791		spliceosomal
			IC1	Melanopsamma pomiformis	AY489677	943
			IE	Melanopsamma pomiformis	AY489677	989
Hirsutella	N	16S	IE	Hirsutella rhossiliensis	AB109760	516
Fusarium oxysporum species complex	N	23S	IA1	Fusarium oxysporum	AY874423	2449
Fusarium solani species complex	N	16S	IC1	Fusarium phaseoli	AF150482	943		GenBank synonym Fusarium solani f. sp. phaseoli
			IC1	Fusarium phaseoli	AF150481	943		GenBank synonym Fusarium solani f. sp. phaseoli
			IE	Fusarium phaseoli	AF150483	1199		GenBank synonym Fusarium solani f. sp. phaseoli
			IE	Fusarium phaseoli	AF150481	1199		GenBank synonym Fusarium solani f. sp. phaseoli
Fusarium solani	N	16S	IE	Fusarium solani f. batatas	AF150484	1199
				Fusarium solani f. robiniae	AF150489	1199
				Fusarium solani f. robiniae	AF150490	1199
				Fusarium solani f. xanthoxyli	AF150491	1199
				Fusarium solani f. xanthoxyli	AF150492	1199
			IC1	Fusarium solani f. sp. piperis	AF150487	943
Stachybotrys	N	16S	U	Stachybotrys subsimplex	AY489679	330		spliceosomal
Ustilaginoidea	N	16S	IC1	Ustilaginoidea virens	AB162148	943
					AB105954	943
					AB116645	943
Verticillium fungicola	N	16S	IE	Verticillium fungicola var. flavidum	AB112030	1199
Halosarpheia	N	16S	U	Halosarpheia fibrosa	AF352078	400		unannotated; spliceosomal
			IC1	Halosarpheia fibrosa	AF352078	943		unannotated; sequence is missing 5' end
			IC1	Halosarpheia marina	AF352082	943		unannotated
Natantispora	N	16S	U	Natantispora lotica	AF352079	331		synonym Halosarpheia lotica; unannotated; spliceosomal
					AF352081	331		synonym Halosarpheia lotica; unannotated; spliceosomal
					AF352080	331		synonym Halosarpheia lotica; unannotated; spliceosomal
			IC1	Natantispora retorquens	AF352087	943		unannotated; sequence is missing 5' end; synonym Halosarpheia retorquens
			IE	Natantispora retorquens	AF352086	1199		unannotated; synonym Halosarpheia retorquens
Sagaaromyces	N	23S	U	Sagaaromyces abonnis	AF539469	783		spliceosomal; synonym Halosarpheia abonnis
Sagaaromyces	N	23S	U	Sagaaromyces ratnagiriensis	AF539470	783		spliceosomal; synonym Halosarpheia ratnagiriensis
Monodictys	N	16S	IC1	Monodictys castaneae	Y11715	943
Pseudallescheria	N	16S	IC1	Pseudallescheria boydii	U43915	943
Pseudallescheria	N	16S	IC1	Pseudallescheria boydii	U43914	943
Graphium	N	16S	IC1	Graphium basitruncatum	AB038421	943
				Graphium eumorphum	AB007684	943
				Graphium penicillioides	AB007681	943
				Graphium putredinis	AB007683	943
			IE	Graphium basitruncatum	AB038421	1199
			IE	Graphium penicillioides	AB007682	1199
Gondwanamyces	N	16S	IE	Gondwanamyces proteae	AY271804	1199
Hilberina	N	23S	U	Hilberina caudata	AY436406	704		spliceosomal
Papulosa	N	16S	IE	Papulosa amerospora	AF064050	1199
Verticillium dahliae	N	16S	IC1	Verticillium dahliae var. longisporum	AF153421	943		synonym Verticillium longisporum
Thyridium	N	16S	IE	Thyridium vestitum	AY544715	989
Pleurostoma	N	16S	IC1	Pleurostoma ootheca	AY761074	943
Togniniella	N	16S	U	Togniniella acerosa	AY761073	1229		spliceosomal
Togniniella	N	16S	U	Togniniella acerosa	AY761072	1229		spliceosomal
Chaetosphaeria	N	16S	U	Chaetosphaeria curvispora	AY502933	1071		spliceosomal
		16S	IE	Chaetosphaeria curvispora	AY502933	1199
		23S	U	Chaetosphaeria sp. 17	AF279416	678		spliceosomal
				Chaetosphaeria sp. 17	AF279417	678		spliceosomal
				Chaetosphaeria sp. 7	AF279418	678		spliceosomal
				Chaetosphaeria sp. 8	AF279419	678		spliceosomal
Melanochaeta	N	23S	U	Melanochaeta sp. 2	AF279420	678		spliceosomal
				Melanochaeta sp. 8	AF279421	678		spliceosomal
				Melanochaeta sp. 8	AF279421	784		spliceosomal
Menispora	N	16S	IE	Menispora tortuosa	AY544723	1199
Coniochaeta	N	16S	IC1	Coniochaeta ligniaria	AY198389	943
				Coniochaeta ligniaria	AJ496242	943
				Coniochaeta malacotricha	AJ496243	943
Cryphonectria	M	16S	IIB	Cryphonectria parasitica	AF029891	788
			IIB	Cryphonectria parasitica	AF029891	952	a.I2
			U	Cryphonectria parasitica	AF029891	915
			IC2	Cryphonectria parasitica	AF029891	1210		ORF's 5' isn't correct
		23S	I	Cryphonectria parasitica	AF068139	2499
	N	16S	IE	Cryphonectria parasitica	L42441	1199	a.I1
	N	16S	IE	Cryphonectria radicalis	L42442	1199
Cryptodiaporthe	N	23S	IC1	Cryptodiaporthe corni	AF408343	798
Rhamphoria	N	16S	U	Rhamphoria delicatula	AF242267	330		spliceosomal
Rhamphoria	N	16S	U	Rhamphoria delicatula	AF242267	1083		spliceosomal
Apioplagiostoma	N	16S	IC1	Apioplagiostoma aceriferum	AF281664	943
Apioplagiostoma	N	16S	IE	Apioplagiostoma aceriferum	AF281665	1199
Ditopella	N	23S	IC1	Ditopella ditopa	AF408360	798
Gnomoniella	N	16S	IC1	Gnomoniella tubiformis	AF281671	1506
Leucostoma	N	16S	IC1	Leucostoma cinctum	AF191167	943
Leucostoma	N	16S	IE	Leucostoma cinctum	AF191168	1199
Gaeumannomyces graminis	N	23S	IC1	Gaeumannomyces graminis var. avenae	U17161	1921
				Gaeumannomyces graminis var. avenae	U17161	2449
				Gaeumannomyces graminis var. tritici	U17160	2449
			IE	Gaeumannomyces graminis var. tritici	U17160	2563
Pseudohalonectria	N	16S	IC1	Pseudohalonectria lignicola	U31812	943
Raffaelea	N	16S	IC1	Raffaelea tritirachium	U81484	0
Annulatascus	N	23S	U	Annulatascus triseptatus	AY346257	783		spliceosomal
Cephalotheca	N	16S	IC1	Cephalotheca sulfurea	AF096173	943
Cryptendoxyla	N	16S	IE	Cryptendoxyla hypophloia	AF015912	989	b.I1
Cryptendoxyla	N	16S	IE	Cryptendoxyla hypophloia	AF281670	1199
Podospora	M	23S	IA1	Podospora anserina	X14735	1699
Podospora	M	23S	IA1	Podospora anserina	X14735	2449
Neurospora	M	23S	IA1	Neurospora crassa	J01427	2449
Ascolacicola	N	16S	IC1	Ascolacicola austriaca	AF242263	788
Barrmaelia	N	16S	IE	Barrmaelia oxyacanthae	AF064048	516
			IC1	Barrmaelia oxyacanthae	AF064048	788
			IC1	Barrmaelia oxyacanthae	AF064048	943
Daldinia	N	16S	IE	Daldinia sp. F16	AY315425	516
Rosellinia	N	16S	IC1	Rosellinia necatrix	AB014044	943
Rosellinia	N	16S	IE	Rosellinia necatrix	AB014044	989
Xylaria	N	16S	IC1	Xylaria acuta	AY544719	943
			IC1	Xylaria polymorpha	AB014043	943
			IE	Xylaria polymorpha	AB014043	989
				Xylaria polymorpha	AB014043	1199
				Xylaria sp. F23	AY315427	516
unclassified Xylariaceae	N	16S	IC1	Xylariaceae sp. F9	AY315419	943
Linocarpon	N	23S	U	Linocarpon appendiculatum	AY346291	678		spliceosomal
Muscodor	N	16S	IC1	Muscodor sp. A10-1	AY049023	788
unclassified Xylariales	N	16S	IE	Xylariales sp. F15	AY315424	516
				Xylariales sp. F15	AY315424	1199
				Xylariales sp. F17	AY315426	516
				Xylariales sp. F17	AY315426	1199
unclassified Pezizomycotina	N	16S	IC1	glacial ice euascomycete GI307	AF261659	1506
Arxula	N	23S	IC1	Arxula adeninivorans	Z50840	2449	a.I1
Kluyveromyces	M	23S	IA1	Kluyveromyces dobzhanskii	AJ229054	2449
				Kluyveromyces lactis	X51805 AJ229055	2449
				Kluyveromyces lactis	AY654900	2449
Pichia	M	23S	IA1	Pichia canadensis	D31785	2449		was Hansenula wingei
Saccharomyces	M	23S	IA1	Saccharomyces cariocus	AJ229045	2449
				Saccharomyces cerevisiae	AJ011856	2449		ORF for SCEI
					X00149	2449	a.I1
					V00699	2449
				Saccharomyces douglasii	X53520	2449
				Saccharomyces paradoxus	AJ229046	2449
				Saccharomyces servazzii	AJ430679	2449
Torulaspora	M	23S	IA1	Torulaspora delbrueckii	AJ229052	2449
				Torulaspora globosa	AJ229053	2449
				Torulaspora pretoriensis	AJ229051	2449
Zygosaccharomyces	M	23S	IA1	Zygosaccharomyces bisporus	AJ229056	2449
Zygosaccharomyces	M	23S	IA1	Zygosaccharomyces rouxii	AJ229050	2449
Candida	N	23S	IE	Candida albicans	X74272	1923
				Candida dubliniensis	Z70663	1923
				Candida dubliniensis	AF405231	1923
	M	23S	IIB	Candida stellata	AY445918	2584
unclassified Ascomycota	N	16S	I	Stegobium paniceum yeast-like symbiont	D49657	114	a.I1
						287	a.I1
						1052	a.I1
						1210	a.I1
						1506	a.I1
Bourdotia	N	16S	IC1	Bourdotia sp. GEL5065	DQ234544	943		missing 3' end of intron
Bourdotia	N	16S	IC1	Bourdotia sp. GEL5065	DQ234545	1506
Artomyces	N	16S	IC1	Artomyces austropiperatus	AY298775	943
				Artomyces pyxidatus	AY298784	943
					AY298774	943
					U59066	943		GenBank synonym Clavicorona pyxidata
					AY298773	943
					AY298771	943
					AY298772	943
					AY298770	943
Auriscalpium	N	16S	IC1	Auriscalpium villipes	AY298776	943
Clavicorona	N	23S	IC1	Clavicorona taxophila	AF115333	798
Lentinellus	N	16S	IC1	Lentinellus castoreus	AY298780	943
				Lentinellus castoreus	AY298781	943
				Lentinellus cochleatus	AY298783	943
				Lentinellus flabelliformis	AY298782	943
				Lentinellus micheneri	AY298779	943
				Lentinellus montanus	U59077	943
					AY298778	943
					U59076	943
				Lentinellus omphalodes	U59078	943
				Lentinellus subaustralis	AY298777	943
Ganoderma	M	16S	IIB	Ganoderma lucidum	AF214475	788
Hydnopolyporus	N	23S	IC1	Hydnopolyporus fimbriatus	DQ457673	798
environmental samples	M	23S	IB4	Russulaceae sp. Type T	AF176829	1923
	N	16S	IC1	uncultured rhizosphere basidiomycete	AY773741	943
					AY099408	943
					AY099407	943
					AY099406	943
				uncultured fungus	AY168914	788
					AY168915	788
					AY168906	943
					AY168905	943
					AM260926	1506
					AM260809	1506
					AM260846	1506
					AM260810	1507
					AM260920	1507
					AM260929	1507
					AM260808	1507
				uncultured soil fungus	AY382422	943
					AY382403	943
					AY382408	943
			I	uncultured fungus	AY168895	788
					AY168894	934
					AM260902	1506
			U	uncultured fungus	AY168911	1197		spliceosomal
			U	uncultured fungus	AY168913	1197		spliceosomal
Piriformospora	N	16S	I	Piriformospora indica	AY293147	1210
Agrocybe	M	16S	IC2	Agrocybe aegerita	U54637	1224	a.I1
		23S	IA3	Agrocybe aegerita	AF087656	580
			ID	Agrocybe aegerita	AF087656	779
			ID	Agrocybe aegerita	AF087656	2585
			IB2	Agrocybe aegerita	AF087656	1066
			IIB	Agrocybe aegerita	AF087656	2059	a.I2
			IA1	Agrocybe aegerita	AF087656	2449
			IB4	Agrocybe aegerita	AF087656	2500
Descolea	N	16S	IC1	Descolea maculata	DQ440633	943
Hebeloma crustuliniforme	M	23S	IB	Hebeloma crustuliniforme icg 1	AF174468	2500
					AF174466	2500
					AF174460	2500
					AF174472	2500
				Hebeloma crustuliniforme icg 2	AF174470	2500
					AF174469	2500
					AF174471	2500
					AF174463	2500
					AF174462	2500
				Hebeloma crustuliniforme icg 3	AF174476	2500
					AF174461	2500
					AF174473	2500
					AF174474	2500
					AF174475	2500
				Hebeloma crustuliniforme icg 4	AF174465	2500
					AF174467	2500
					AF174464	2500
Phaeocollybia	N	16S	IC1	Phaeocollybia festiva	DQ462516	943
Simocybe	N	16S	IC1	Simocybe serrulata	DQ465343	943
Hygrocybe miniata	N	16S	IC1	Hygrocybe miniata f. longipes	DQ444859	943
Chondrostereum	N	16S	IC1	Chondrostereum purpureum	AF082851	943
Henningsomyces	N	23S	IC1	Henningsomyces puber	AY571009	798
Henningsomyces	N	23S	IC1	Henningsomyces sp. C58569	AY571011	798
Schizophyllum	N	16S	IC1	Schizophyllum sp. MI 01	AB245444	943
Schizophyllum	N	16S	IC1	Schizophyllum sp. MI 15	AB245445	943
Galerina	N	16S	IC1	Galerina atkinsoniana	DQ440634	943
Tubaria	N	16S	IC1	Tubaria sp. E8069	DQ462517	943
Clitocybula	N	16S	IC1	Clitocybula atroalba	DQ437682	943
Dictyopanus	N	23S	IC1	Dictyopanus pusillus	AY014291	798
Hemimycena	N	23S	IC1	Hemimycena gracilis	DQ457671	798
Megacollybia	N	23S	IC1	Megacollybia platyphylla	AY635778	798
Megacollybia	N	23S	IC1	Megacollybia platyphylla	AY702016	798
Mycena	N	16S	IC1	Mycena aff. pura PBM 2665	DQ457646	943
		16S	IC1	Mycena plumbea	DQ457697	943
		23S	IC1	Mycena aff. pura PBM 2665	DQ457689	798
				Mycena aff. pura PBM 2665	DQ457688	798
				Mycena amabilissima	DQ457691	798
				Mycena amicta	DQ457692	798
				Mycena aurantiidisca	DQ470811	798
				Mycena capillaripes	AY207247	798
				Mycena crocata	AY207241	798
				Mycena galericulata	AY207251	798
				Mycena galericulata	AY647216	798
				Mycena galopus	AY207250	798
				Mycena leptocephala	AY207253	798
				Mycena niveipes	AY207242	798
				Mycena plumbea	DQ470813	798
				Mycena pura	AY207244	798
				Mycena renati	AY207256	798
				Mycena tintinnabulum	AY207258	798
Panellus	N	16S	IC1	Panellus stypticus	U59090	943
		23S	IC1	Panellus stypticus	AY398745	798
		23S	IC1	Panellus stypticus	AY014292	798
Byssoporia	M	23S	U	Byssoporia terrestris	AD001572	1923
Byssoporia	M	23S	U	Byssoporia terrestris	AD001572	1974
Fibulorhizoctonia	N	23S	IC1	Fibulorhizoctonia sp. LA082103L	AY635779	798
Suillus	M	23S	IC2	Suillus grisellus	L47591	1949
				Suillus luteus	L47586	1685	a.I1
					L47586	1949	a.I1
					L47592	1949
					L47593	1949
				Suillus pungens	L47588	1949
				Suillus viscidus	L47590	1949
				Suillus viscidus	L47589	1949
			IB4	Suillus luteus	L47586	1923	a.I1
			IB4	Suillus luteus	L47586	2500	a.I1
			IB2	Suillus luteus	L47586	1974	a.I1
			IIB	Suillus luteus	L47586	2059
			IA1	Suillus luteus	L47586	2449	a.I1
			IA1	Suillus luteus	L47586	2504	a.I1
Lentaria	M	16S	IIB	Lentaria byssiseda	AF185983	788
Filobasidiella neoformans	M	23S	IA1	Cryptococcus neoformans var. neoformans	AY560611	2449
Filobasidiella neoformans	M	23S	IA1	Cryptococcus neoformans var. neoformans	AY560611	2504
Trimorphomyces	M	23S	IB	Trimorphomyces papilionaceus	X73672	1939	a.I1
Bensingtonia	N	16S	IC1	Bensingtonia ciliata	D38233	943	a.I1
				Bensingtonia ciliata	D38233	1506	a.I1
				Bensingtonia thailandica	AB040115	943
						1389
						1506
					AB040114	943
						1389
						1506
					AB040117	943
						1389
						1506
					AB040116	943
						1389
						1506
				Bensingtonia yamatoana	D38239	943	a.I1
					D38239	1506	a.I1
					AF101826	943
			IE	Bensingtonia sakaguchii	AB001747	1199
				Bensingtonia sakaguchii	AB001746	1199
				Bensingtonia thailandica	AB040116	1199
					AB040114	1199
					AB040117	1199
					AB040115	1199
			U	Bensingtonia sakaguchii	AB001747	1502
			U	Bensingtonia sakaguchii	AB001746	1502
Sporobolomyces	N	16S	U	Sporobolomyces dimmenae	D66881	788
						879
						896
						1508
			I	Sporobolomyces dimmenae	D66881	956
						966
						1210
			IC1	Sporobolomyces diospyroris	AB126047	943
				Sporobolomyces magnisporus	AB112078	943		misannotated as two introns
					AB112078	1389
					AB112077	1506		misannotated
				Sporobolomyces ruber	AB021686	943
				Sporobolomyces sasicola	AB021688	943
				Sporobolomyces bischofiae	AB035721	1389
				Sporobolomyces bischofiae	AB035721	1506
				Sporobolomyces ogasawarensis	AB035712	1506
					AB035713	1506
					AB035714	1506
					AB035715	1506
					AB035719	1506
					AB035718	1506
					AB035717	1506
					AB035716	1506
			IE	Sporobolomyces taupoensis	D66886	1199
Bannoa	N	16S	I	Bannoa hahajimensis	AB035895	1210
					AB035894	1210
					AB035897	1210
					AB035896	1210
Sakaguchia	N	16S	IE	Sakaguchia dacryoidea	D13459	516		was Rhodosporidium dacryoidum
Naohidea	N	16S	IC1	Naohidea sebacea	AY123302	898
Naohidea	N	23S	IC1	Naohidea sebacea	AF522176	798
Microbotryum	N	16S	IE	Microbotryum violaceum	DQ789983	1199
Ustilentyloma	N	16S	IE	Ustilentyloma fluitans	AY124481	516
Colacogloea	N	16S	IE	Colacogloea peniophorae	DQ234564	516
Colacogloea	N	16S	IC1	Colacogloea peniophorae	DQ234565	1506
Entyloma	N	23S	IC1	Entyloma arnoseridis	DQ645528	798
		23S	IC1	Entyloma calendulae	DQ663687	798
		16S	IE	Entyloma calendulae	DQ663688	516
		16S	IC1	Entyloma calendulae	DQ663688	943		missing 3' end of intron
Entyloma holwayi group	N	16S	IE	Entyloma holwayi	DQ234562	516
		16S	IC1	Entyloma holwayi	DQ234562	943
		23S	IC1	Entyloma holwayi	AY745721	798
Tilletiopsis	N	16S	IE	Tilletiopsis oryzicola	AB045705	1199
				Tilletiopsis flava	AB045703	516
					AB045703	1199
					D82819	516
					D82819	1199
			IC1	Tilletiopsis oryzicola	AB045705	1506
				Tilletiopsis flava	D82819	1506
				Tilletiopsis flava	AB045703	1506
Exobasidium	N	16S	IE	Exobasidium gracile	DQ785786	516
						989
						1199
			IC1	Exobasidium gracile	DQ785786	943
				Exobasidium gracile	DQ785786	1389
				Exobasidium rhododendri	DQ667152	943
		23S	IC1	Exobasidium gracile	DQ663699	798
		23S	IE	Exobasidium gracile	DQ663699	958		misannotated
Graphiola	N	16S	IC1	Graphiola phoenicis	AB000961	0
			IC1	Graphiola phoenicis	AB000963	0
			IE	Graphiola phoenicis	D63930	0		IP possible 516
			IE	Graphiola phoenicis	AB000962	0
Cintractia	N	16S	IE	Cintractia axicola	DQ631907	516
			IE	Cintractia sorghi-vulgaris	DQ234548	1199
			IC1	Cintractia axicola	DQ631907	943		partial; terminates after P7'
			IC1	Cintractia sorghi-vulgaris	DQ234548	943
		23S	IC1	Cintractia axicola	DQ631906	798
		23S	IC1	Cintractia sorghi-vulgaris	AY745726	798
Ustilago	N	16S	IC1	Ustilago maydis	X62396	943	a.I1
Coemansia	N	16S	IC1	Coemansia mojavensis	AB053169	943
		23S	I	Coemansia reversa	AY546689	1090
		23S	IC1	Coemansia reversa	AY546689	2449
Zoophagus	N	16S	IC1	Zoophagus insidians	AB016009	1389
unclassified Fungi	N	16S	IC1	mycorrhizal fungal sp. pkc15	AY394887	1506
Metazoa	Trichoplax	M	23S	IIB	Trichoplax adhaerens	DQ112541	2586
	unclassified Placozoa	M	23S	IIB	Placozoan sp. BZ10101	DQ889456	1787
					Placozoan sp. BZ10101	DQ889456	2586
					Placozoan sp. BZ2423	DQ889458	2586
Heterolobosea	Acrasida	Acrasis	N	16S	I	Acrasis rosea	AF011458	529
								891
								956
	Schizopyrenida	Naegleria	N	16S	IC1	Naegleria andersoni	Z16417	516
								516		LIT: J. Eukaryot. Microbiol. 40(2):179-187 (1993).
							X78280	516
						Naegleria clarki	AF338417	516
							AF338418	516
							AF338419	516
							AF338420	516
							AF338422	516
							X78281	516
						Naegleria gruberi	X78278	516
						Naegleria italica	X78277	516
						Naegleria jamiesoni	X78279	516
						Naegleria sp.	Y10190	516
							X79069	516
							X79070	516
							X79071	516
							AJ001399	516
					I	Naegleria australiensis		516		LIT: Nuc. Acids Res. 22(22):4553-4559 (1994).
				23S	IC1	Naegleria morganensis	AJ311175	2563
						Naegleria sp.	AJ001316	1921		IP from LIT: Nucleic Acids Res. 26(2):456-461 (1998).
							AJ001314	1949		IP from LIT: Nucleic Acids Res. 26(2):456-461 (1998).
							AJ001315	2563		IP from LIT: Nucleic Acids Res. 26(2):456-461 (1998).
					IE	Naegleria sp.	AJ271406	1926
		unclassified Naegleria	N	23S	IE	Naegleria sp. NG874	AJ311176	1926
	unclassified Heterolobosea	Macropharyngomonas	N	16S	IC1	Macropharyngomonas halophila	AF011465	1062
	unclassified Heterolobosea	Macropharyngomonas	N	16S	IC1	Macropharyngomonas halophila	AF011465	1199
Rhizaria	Cercozoa	Heteromita	N	16S	IC1	Heteromita sp. PRA-74	AY905499	1506
		Plasmodiophora	N	16S	IE	Plasmodiophora brassicae	U18981	516
					IC1	Plasmodiophora brassicae	U18981	943
					IC1	Plasmodiophora brassicae	U18981	1506
		unclassified Cercozoa	N	16S	IC1	Nuclearia-like filose amoeba N-Por	AF289081	943
	Foraminifera	Rotaliella	N	23S	IE	Rotaliella elatiana	X78521	1926
Rhodophyta	Bangiophyceae	Bangia	N	16S	IC1	Bangia atropurpurea	D88387	516	b.I1
							D88387	1506
							AB053491	516
							AF172565	516		England River Thames/BI12; exon sequence from AF043365
							AF172563	516		Ireland/IR; exon sequence from AF043365
							AF172562	516		Netherlands/NL: Ysselmeer; exon sequence from AF169341
							AF172566	516		Great Lakes/GL; exon sequence from AF043365
							AF172564	516		Italy/IT; exon sequence from AF043365
							L36066	1506
						Bangia fuscopurpurea	AF172571	516		Nova Scotia/NS; exon sequence from AF169337
							AF172594	1506		Nova Scotia/NS; exon sequence from AF169337
							AF172568	516		California/CA; exon sequence from AF043356
							AF172590	1506		California/CA; exon sequence from AF043356
							AF342745	516	b.I1
							AF342745	1506
							AF172560	516		Germany: Helgoland/HL; exon sequence from AF175532
							AF172585	1506		Germany: Helgoland/HL; exon sequence from AF175532
							AF172561	516		Massachusetts/MA; exon sequence from AF043362
							AF172557	516	b.I1	Australia/AU; exon sequence from AF175531
							AF172567	516		Victoria/BC2; exon sequence from AF043359
							AF172591	1506		Victoria/BC2; exon sequence from AF043359
							AF172572	516	b.I1	Oregon/OR; exon sequence from AF043358
							AF172589	1506		Oregon/OR; exon sequence from AF043358
							AB053489	516
							AF172556	516		France: Nice; exon sequence from AF175535
							AF172584	1506		France: Nice; exon sequence from AF175535
							AF172555	516		New Jersey/NJ; exon sequence from AF169335
							AF172583	1506		New Jersey/NJ; exon sequence from AF169335
							AF172559	516		North Carolina/NC; exon sequence from AF043363
							AF172586	1506		North Carolina/NC; exon sequence from AF043363
							AF172558	516		Greece/GR; exon sequence from AF175533
							AF172587	1506		Greece/GR; exon sequence from AF175533
							AF172569	516		Ireland/IR; exon sequence from AF175534
							AF172593	1506		Ireland/IR; exon sequence from AF175534
							AF172570	516		Newfoundland/NF; exon sequence from AF043357
							AF172592	1506		Newfoundland/NF; exon sequence from AF043357
							AB053488	516
							AF172582	1506		Mexico/MEX; exon sequence from AF169334
						Bangia sp. strain BDS725	AY184337	516
						Bangia sp. strain BGA458	AY184341	516
						Bangia sp. strain BNS727	AY184345	516
						Bangia sp. strain BWP662	AY184348	516
						Bangia sp.	AF172578	516	b.I1	Virgin Islands/VIS7; exon sequence from AF043364
		Porphyra	N	16S	IC1	Porphyra capensis	AY766361	516
						Porphyra capensis	AY766361	1506
						Porphyra cinnamomea	AF136418 AF136419	516
						Porphyra cinnamomea	AF136419	1506
						Porphyra dentata	AB013183	516
						Porphyra dentata	AB013183	1506
						Porphyra drewiana	AY766362	1506
						Porphyra fucicola	AF172595	1506
						Porphyra haitanensis	AB015795	516
						Porphyra haitanensis	AB013181	1506
						Porphyra kanakaensis	AF172580	516		exon sequence from AF175556
						Porphyra katadae	AB013184	516
						Porphyra katadae	AB013184	1506
						Porphyra leucosticta	AF342746	516	b.I1
							AF172576	516		exon sequence from AF175557
							AF172598	1506		exon sequence from AF175557
						Porphyra lucasii	AY139685	516		synonym: Porphyra sp. WELT A23051
						Porphyra nereocystis	AF172577	516		exon sequence from AF175542
						Porphyra onoi	AB015794	516
						Porphyra pseudolanceolata	AF172599	1506		exon sequence from AF175543
						Porphyra pseudolinearis	AB013185	516
1506						Porphyra pseudolinearis	AB013185
Porphyra purpurea	AF172575					516		exon sequence from AF175551
Porphyra purpurea	AF172588					1506		exon sequence from AF175551
Porphyra rakiura	AF136425					516
	AF136425					1506
	AY139684					516
	AY139682					516
Porphyra rediviva	AF172600					1506		exon sequence from AF175544
Porphyra sp.	AF136420					516
	AF136420					1506
	AB013182					516
	AB013182					1506
	AB017077					1506
	AF136422					1506
Porphyra spiralis	L26175					1506	a.I1
	L26176					1506	a.I1
	L26177					1506	a.I1
Porphyra suborbiculata	AF378653					516		synonym Porphyra carolinensis
	AF378653					1506		synonym Porphyra carolinensis
	AB015796					516
	AF133792					516		synonym Porphyra carolinensis
	AF378665					516		synonym Porphyra lilliputiana
	AF378665					1506		synonym Porphyra lilliputiana
	AF378658					516		synonym Porphyra lilliputiana
	AF378658					1506		synonym Porphyra lilliputiana
	AF378659					516		synonym Porphyra lilliputiana
	AF378659					1506		synonym Porphyra lilliputiana
	AF378660					516		synonym Porphyra lilliputiana
	AF378660					1506		synonym Porphyra lilliputiana
	AF378661					516		synonym Porphyra lilliputiana
	AF378661					1506		synonym Porphyra lilliputiana
	AF136424					516		synonym Porphyra lilliputiana
	AF136424					1506		synonym Porphyra lilliputiana
	AF378662					516		synonym Porphyra lilliputiana
	AF378662					1506		synonym Porphyra lilliputiana
	AF378663					516		synonym Porphyra lilliputiana
	AF378663					1506		synonym Porphyra lilliputiana
	AF378664					516		synonym Porphyra lilliputiana
	AF378664					1506		synonym Porphyra lilliputiana
	AF378649					516		synonym Porphyra lilliputiana
	AF378649					1506		synonym Porphyra lilliputiana
	AF378655					516
	AF378656					516
	AF378657	516
	AF378650	516		synonym Porphyra lilliputiana
	AF378650	1506		synonym Porphyra lilliputiana
	AF378651	516		synonym Porphyra lilliputiana
	AF378651	1506		synonym Porphyra lilliputiana
	AB013180	516
	AF378654	516		synonym Porphyra carolinensis
	AF378654	1506		synonym Porphyra carolinensis
	AF378652	516
	AF378652	1506
Porphyra tenera	D86237	516		intron not annotated
	D86236	516		intron not annotated
	AB029883	516		P2 P2.1 missing some part
	AB029883	1506
	AB029880	516
	AB029880	1506
	AB029879	516
	AB029879	1506
	AB013175	516
	AB013175	1506
	AB013176	516
	AB013176	1506
	AB029881	516
	AB029881	1506
	AB029882	516		P2 P2.1 missing some part
	AB029882	1506
	AB100959	516
	AB100959	1506
	AB100958	516
	AB100958	1506
	AB000964	516
	AB029884	516		P2 P2.1 missing some part
	AB029884	1506
	AB101442	516
	AB101442	1506
Porphyra tenuipedalis	AB015797	516
Porphyra torta	AF172579	516		exon sequence from AF175552
Porphyra umbilicalis	AF172573	516		New Jersey/NJ; exon from AF175553
	AY347905	1506
	AY347902	1506
	AF172602	1506		Germany: Hallig Grode; exon sequence from AF175549
	AY347906	1506
	AY347909	1506
	AY347904	1506
	AY347903	1506
	AY347910	1506
	AY347908	1506
Porphyra virididentata	AF136421	1506
Porphyra yezoensis	D79976	516	a.I1
	AY131005	516
	AB013177	516
	AB013178	516
	AB013178	1506
	AB017081	1506
	AB017076	1506
	AB017075	1506
	AB017083	1506
	AB017078	1506
M	23S	IIB	Porphyra purpurea	AF114794	2509
M	23S	IIB	Porphyra purpurea	AF114794	2610
unclassified Porphyra	N	16S	IC1	Porphyra sp. Baleia	AY766358	516
				Porphyra sp. Baleia	AY766358	1506
				Porphyra sp. Brest	AF172601	1506		exon sequence from AF175548
				Porphyra sp. Marseille	AF172597	1506		exon sequence from AF175546
				Porphyra sp. Wales SW1	AF172574	516		exon from AF175554
				Porphyra sp. strain GRB145	AY184349	516
				Porphyra sp. strain GRB488	AY184350	516
Florideophyceae	Hildenbrandia	N	16S	IE	Hildenbrandia rubra	AY571893	989
				IC1	Hildenbrandia rubra	AF076995	1506
						AY571896	1506
						AY571894	1506
						AY571895	1506
						AY571899	1506
						AY571898	1506
						L19345	1506	b.I1
						AY571897	1506
			23S	IC1	Hildenbrandia rubra	AF419136	798
Rhodellophyceae	Rhodella	N	16S	IC1	Rhodella sp. MBIC10593	AB183619	516
Rhodellophyceae	Rhodella	N	16S	IC1	Rhodella sp. MBIC10593	AB183619	1506
Viridiplantae	Chlorophyta	Stigeoclonium	C	16S	IA3	Stigeoclonium helveticum	DQ630521	793
				23S	IA3	Stigeoclonium helveticum	L49157	730
					IA1	Stigeoclonium helveticum	L49157	1065
					IB4	Stigeoclonium helveticum	L49157	1923
					IB4	Stigeoclonium helveticum	L49157	2500
		Carteria	C	23S	IB4	Carteria lunzensis	L42986	1923
					IA3	Carteria lunzensis	L42986	2593
					IA3	Carteria olivieri	L43500	2593
					IA1	Carteria olivieri	L43500	2449
		Chlamydomonas	C	23S	IA3	Chlamydomonas agloeformis	L43351	2593
						Chlamydomonas callosa	L43501	2593
						Chlamydomonas mexicana	L49148	2593
						Chlamydomonas monadina	L49149	2596
						Chlamydomonas nivalis	L42990	2593
						Chlamydomonas peterfii	L43538	2593
						Chlamydomonas reinhardtii	X01977	2593
							FJ423446	2593
							FJ423446	2593
					IB	Chlamydomonas applanata	L06107	2500		synonym Chlamydomonas humicola
					IB4	Chlamydomonas applanata	L42989	2500		synonym Chlamydomonas humicola
						Chlamydomonas callosa	L43501	1931
						Chlamydomonas callosa	L43501	2262
						Chlamydomonas frankii	L43352	1931
								2262
								2500
						Chlamydomonas geitleri	L43353	1931
						Chlamydomonas komma	L43502	1931
						Chlamydomonas mexicana	L49148	1931
						Chlamydomonas monadina	L49149	1923
								2262
								2500
						Chlamydomonas mutabilis	L42859	1923
						Chlamydomonas sp. SAG 66.72	L43539	2262
						Chlamydomonas starrii	L43504	2500
						Chlamydomonas zebra	L43356	2500
					IA1	Chlamydomonas callosa	L43501	958
						Chlamydomonas callosa	L43501	1255
						Chlamydomonas frankii	L43352	1255
						Chlamydomonas komma	L43502	1255
						Chlamydomonas pseudopertusa	L43355	2449
						Chlamydomonas sp. SAG 66.72	L43539	1065
						Chlamydomonas sp. SAG 66.72	L43539	2449
					I	Chlamydomonas indica	Z17228	730		LIT: J. Mol. Biol. 232:446-467 (1993).
								958		LIT: J. Mol. Biol. 232:446-467 (1993).
								1065		LIT: J. Mol. Biol. 232:446-467 (1993).
								1923		LIT: J. Mol. Biol. 232:446-467 (1993).
								2596		LIT: J. Mol. Biol. 232:446-467 (1993).
				16S	IA3	Chlamydomonas moewusii	X15850	531
			M	23S	IA1	Chlamydomonas moewusii	M90640	2449
		Halosarcinochlamys	N	23S	IC1	Halosarcinochlamys cherokeensis	DQ015760	798		misannotated; synonym: chlamydomonad sp. SPMO-BS
		Lobochlamys	C	16S	IA3	Lobochlamys segnis	L39865	508		synonym Chlamydomonas pallidostigmatica
				16S	IA3	Lobochlamys segnis	L39865	793		synonym Chlamydomonas pallidostigmatica
				23S	IB4	Lobochlamys segnis	L43503	1923		synonym Chlamydomonas pallidostigmatica
								1931		synonym Chlamydomonas pallidostigmatica
								2262		synonym Chlamydomonas pallidostigmatica
					IB	Lobochlamys segnis	L36830	1931	a.I1	synonym Chlamydomonas pallidostigmatica
					IA1	Lobochlamys segnis	L43503	2449		synonym Chlamydomonas pallidostigmatica
					IA3	Lobochlamys segnis	L43503	2596		synonym Chlamydomonas pallidostigmatica
			N	16S	IC1	Lobochlamys segnis	AJ410456	1512		synonym Chlamydomonas segnis
		Dunaliella	N	16S	IC1	Dunaliella bardawil	AF150905	943
						Dunaliella bardawil	AF150905	1512
						Dunaliella parva	M62998	943	a.I1
						Dunaliella parva	M62998	1512	a.I1
						Dunaliella salina	UNP00875	943
M84320	943						a.I1
DQ447648	943
23S	IC1			Dunaliella sp. SPMO 980625-1E	DQ015750	798		misannotated; synonym: Dunaliella sp. SPMO
23S	IC1			Dunaliella viridis	DQ015754	798		misannotated
C	23S		IA1	Dunaliella parva	L43540	1065
			IA1	Dunaliella parva	L43540	2449
			IB4	Dunaliella parva	L43540	1931
			IB4	Dunaliella parva	L43540	2500
Chlorogonium	C	23S	IB4	Chlorogonium elongatum	L42860	1923
Haematococcus	C	23S	IA3	Haematococcus lacustris	L49151	730
			IA3	Haematococcus lacustris	L49151	2593
			IA1	Haematococcus lacustris	L49151	1065
			IB4	Haematococcus lacustris	L49151	1931
Characium	N	16S	IC1	Characium saccatum	M84319	1512	a.I1
Chlorococcum	C	23S	IA1	Chlorococcum echinozygotum	L44123	1766
			IA1	Chlorococcum echinozygotum	L44123	2449
			IB4	Chlorococcum echinozygotum	L44123	1923
			IA3	Chlorococcum echinozygotum	L44123	2596
Dictyochloris	N	16S	IC1	Dictyochloris fragrans	AF367860	40
						943
						1512
					AF367861	943
				Dictyochloris pulchra	AF367862	40
						943
						1512
		23S	IC1	Dictyochloris fragrans	AY206712	798
		23S	IC1	Dictyochloris pulchra	AY206713	798
Mychonastes	N	16S	IE	Mychonastes sp. 5C5	AF357153	516
Pseudomuriella	N	16S	IE	Pseudomuriella aurantiaca	AB005748	516		misspelling Muriella aurantica
Pseudomuriella	N	16S	IE	Pseudomuriella aurantiaca	X91268	516		misspelling Muriella aurantica
Radiococcus	N	16S	IE	Radiococcus polycoccus	AY044649	516		synonym Coenochloris polycocca
			IE	Radiococcus polycoccus	AY044650	516		synonym Coenochloris polycocca
			IC1	Radiococcus polycoccus	AY044650	1046		synonym Coenochloris polycocca
Chlorosarcina	C	23S	IB4	Chlorosarcina brevispinosa	L49150	1917
			IB4	Chlorosarcina brevispinosa	L49150	1931
			IA3	Chlorosarcina brevispinosa	L49150	1951
			IA3	Chlorosarcina brevispinosa	L49150	2596
			IA1	Chlorosarcina brevispinosa	L49150	2449
Oedogonium	C	23S	IB4	Oedogonium cardiacum	EU677193	1931
			IB4	Oedogonium cardiacum	EU677193	1931
			IA3	Oedogonium cardiacum	EU677193	2596
			IA3	Oedogonium cardiacum	EU677193	2596
Coelastrella	N	16S	IE	Coelastrella multistriata	AB012846	516		missing 3' end of intron -- only 50% complete
Coelastrella	N	16S	IC1	Coelastrella multistriata	AB012846	943		missing 3'end of intron
Coelastrella multistriata	N	16S	IE	Coelastrella multistriata var. corcontica	AB037082	516
Coelastrella multistriata	N	16S	IC1	Coelastrella multistriata var. corcontica	AB037082	943
Coelastrum	N	16S	IC1	Coelastrum astroideum	AF388380	943
				Coelastrum pseudomicroporum	AF388381	651		intron in variable region near E. coli position 651
						1046
						1512
			IE	Coelastrum pseudomicroporum	AF388381	516
Desmodesmus	N	16S	IC1	Desmodesmus pirkollei	AF348496	943
Hariotina	N	16S	IE	Hariotina reticulata	AF388382	516		synonym Coelastrum reticulatum
Neodesmus	N	16S	IC1	Neodesmus danubialis	AB037086	323
Neodesmus	N	16S	IC1	Neodesmus danubialis	AB037086	1046
Pseudodidymocystis	N	16S	IC1	Pseudodidymocystis planctonica	AB037087	40
						943
						1139		intron in variable region near E. coli position 1139
			IE	Pseudodidymocystis planctonica	AB037087	516
Scenedesmus arcuatus	N	16S	IC1	Scenedesmus arcuatus var. platydiscus	AY170312	156
Scenedesmus	C	23S	IB4	Scenedesmus obliquus	L43360	1923
	C	23S	IA3	Scenedesmus obliquus	L43360	2593
	M	16S	IIB	Scenedesmus obliquus	AJ277428	967
					AF204057	967
					X17375	967
		23S	IIB	Scenedesmus obliquus	AF204057	2455
			IIB	Scenedesmus obliquus	X17375	2455	a.I2
			IA1	Scenedesmus obliquus	X17375	2504
			IA1	Scenedesmus obliquus	AF204057	2504
	N	16S	IC1	Scenedesmus producto-capitatus	X91266	943
				Scenedesmus pupukensis	X91267	323		was Kermatia pupukensis
				Scenedesmus pupukensis	X91267	943		was Kermatia pupukensis
				Scenedesmus sp. CCMP 1625	AF339735	943
			IE	Scenedesmus sp. CCMP 1625	AF339735	516
Schroederiella	N	16S	IC1	Schroederiella apiculata	AB037098	943
Scotiellopsis	N	16S	IE	Scotiellopsis oocystiformis	AB012848	568		missing P8' to 3' end of int.
Scotiellopsis	N	16S	IC1	Scotiellopsis terrestris	AB012847	943
Tetradesmus	N	16S	IC1	Tetradesmus wisconsinensis	AB037097	943		synonym Scenedesmus wisconsinensis
unclassified Scenedesmaceae	N	16S	IC1	coccoid green alga JL 4-10	AY195982	943
Ankistrodesmus	N	16S	IC1	Ankistrodesmus gracilis	AY846371	943
				Ankistrodesmus sp. NDem 9/21 T-6w	AY846374	943
				Ankistrodesmus sp. NDem 9/21 T-6w	AY846374	1139		intron in variable region near E. coli position 1139
				Ankistrodesmus stipitatus	X56100	1046	a.I1
	C	23S	IB4	Ankistrodesmus stipitatus	L42984	1923
	C	23S	IB4	Ankistrodesmus stipitatus	L42984	2500
Kirchneriella	N	16S	IC1	Kirchneriella aperta	AJ271859	156
						943
						1046
			IE	Kirchneriella aperta	AJ271859	516
Monoraphidium	N	16S	IE	Monoraphidium contortum	AY846375	516
			IE	Monoraphidium terrestre	Y17817	516
			IC1	Monoraphidium contortum	AY846375	943
				Monoraphidium minutum	AY846380	943
				Monoraphidium minutum	AY846380	1046
				Monoraphidium saxatile	AY846384	943
				Monoraphidium terrestre	Y17817	943
						1046
						1512
Podohedriella	N	16S	IE	Podohedriella falcata	X97352	516		synonym Ankistrodesmus falcatus
Quadrigula	N	16S	IE	Quadrigula closterioides	Y17924	516
Quadrigula	N	16S	IC1	Quadrigula closterioides	Y17924	943
Raphidocelis	N	16S	IC1	Raphidocelis subcapitata	AY846381	651		intron in variable region near E. coli position 651
						943
						1046
Selenastrum	N	16S	IC1	Selenastrum capricornutum	AF169628	156
						170
						943
						1046
						1139		intron in variable region near E. coli position 1139
						1512
Schroederia	N	16S	IC1	Schroederia setigera	AF277650	943
Tetraedron	N	16S	IE	Tetraedron minimum	AY663042	516
Tetraedron	N	16S	IC1	Tetraedron minimum	AY663042	943
Sphaeropleales incertae sedis	N	16S	IE	Botryococcus sp. UTEX 2629	AJ581914	516
Sphaeropleales incertae sedis	N	16S	IC1	Botryococcus sp. UTEX 2629	AJ581914	1512
Bracteacoccus	N	16S	IE	Bracteacoccus sp. BC2-1	AF516676	516
Oltmannsiellopsis	C	23S	IB4	Oltmannsiellopsis viridis	DQ291132	1931
					DQ291132	2500
					DQ291132	1931
					DQ291132	2500
			IA3	Oltmannsiellopsis viridis	DQ291132	2593
			IA3	Oltmannsiellopsis viridis	DQ291132	2593
	M	23S	IB4	Oltmannsiellopsis viridis	DQ365900	2500
Pedinomonas	M	23S	IIB	Pedinomonas minor	AF116775	1787
	C	23S	IB4	Pedinomonas tuberculata	L43541	1931
			IB4	Pedinomonas tuberculata	L43541	2500
			IA1	Pedinomonas tuberculata	L43541	2449
Scherffelia	C	23S	IA3	Scherffelia dubia	AF393609	2593
Scherffelia	C	23S	IA3	Scherffelia dubia	L44126	2593
Monomastix	C	23S	IB4	Monomastix sp. M722	L44124	1931
				Monomastix sp. OKE-1	L49154	1931		synonym Monomastix sp. CL-1997
				Monomastix sp. OKE-1	L49154	2500		synonym Monomastix sp. CL-1997
			IA3	Monomastix sp. M722	L44124	1951
				Monomastix sp. M722	L44124	2593
				Monomastix sp. OKE-1	L49154	1951		synonym Monomastix sp. CL-1997
				Monomastix sp. OKE-1	L49154	2593		synonym Monomastix sp. CL-1997
	M	23S	IB4	Monomastix sp. M722	AY008340	1931		IP noted by authors in manuscript
	M	23S	IB4	Monomastix sp. OKE-1	AY008339	1931		IP noted by authors in manuscript
Nephroselmis	M	23S	IB	Nephroselmis olivacea	AF110138	1931
			IA3	Nephroselmis olivacea	AF110138	2500
			IA3	Nephroselmis olivacea	AF110138	2593
Pterosperma	C	23S	IB4	Pterosperma cristatum	L43359	1931
Chlorella	N	16S	IE	Chlorella pyrenoidosa	AB240151	516
				Chlorella sp. 2A3	AF357146	516
				Chlorella sp. AN 1-3	AY195964	651		intron in variable region near E. coli position 651
				Chlorella sp. MBIC10744	AB183634	516
				Chlorella sp. MRBG1	AB219527	943
				'Chlorella' luteoviridis	X73997	516		synonym Chlorella luteoviridis
				'Chlorella' luteoviridis	X73998	516		synonym Chlorella luteoviridis
				'Chlorella' saccharophila	X73991	516		synonym Chlorella saccharophila
				'Chlorella' saccharophila	AB058310	516
				Chlorella sp. BC4-VF9	AF516675	516
			IC1	Chlorella sorokiniana	X73993	323	a.I1
				Chlorella sorokiniana	X73993	1046	b.I1
				Chlorella sp. MBIC10043	AB183579	943
				Chlorella sp. MBIC10744	AB183634	156
				Chlorella sp. MBIC10747	AB183635	943
				Chlorella sp. MRBG1	AB219527	1367
				Chlorella sp. MRBG1	AB219527	1512
				Chlorella trebouxioides	AB006048	156
				'Chlorella' luteoviridis	X73998	1052	a.I1	synonym Chlorella luteoviridis
				'Chlorella' mirabilis	X74000	1506	a.I1	synonym Chlorella mirabilis
				'Chlorella' saccharophila	AB058310	156	b.I1
					AB058300	943
					AB058301	943
					AB183578	943
					AB183577	943
					AB183576	943
					AB183575	943
				Chlorella sp. MDL4-3	AY197631	156
	C	23S	IA3	Chlorella vulgaris	L43357	2593
	C	23S	IA3	Chlorella vulgaris	AB001684	2593
	M	23S	IB4	Chlorella vulgaris	AY008337	1931		IP noted by authors in manuscript
	M	23S	IA3	Chlorella vulgaris	AY008338	1951		IP noted by authors in manuscript
Closteriopsis	C	16S	IA3	Closteriopsis acicularis	Y17632	508		was Chlorella acicularis
Prototheca	M	23S	IA1	Prototheca wickerhamii	X68722	2449
Prototheca	M	23S	IA1	Prototheca wickerhamii	X68722	2504
Koliella	N	16S	IE	Koliella spiculiformis	AF278744	516
			IC1	Koliella spiculiformis	AF278744	943
			IC1	Koliella sempervirens	AF278743	1506
Amphikrikos	N	16S	IC1	Amphikrikos cf. nanus Hegewald 1995-26	AF228690	156		synonym Amphikrikos sp. Hegewald 1995-26
						651		intron in variable region near E. coli position 651; synonym Amphikrikos sp. Hegewald 1995-26
						1139		intron in variable region near E. coli position 1139; synonym Amphikrikos sp. Hegewald 1995-26
			IE	Amphikrikos cf. nanus Hegewald 1995-26	AF228690	516		synonym Amphikrikos sp. Hegewald 1995-26
Oocystis	N	16S	IC1	Oocystis heteromucosa	AF228689	943
Stichococcus	N	16S	IE	Stichococcus bacillaris	AB055864	516
			IE	Stichococcus sp. MBIC10457	AB183599	516
			IC1	Stichococcus bacillaris	AB055865	943
					AB055865	1506
					AB055864	943
					AB055864	1506
					AB055866	1506
				Stichococcus sp. BCP-SRS2-14	AY377441	943
				Stichococcus sp. MBIC10457	AB183599	943
				Stichococcus sp. MBIC10457	AB183599	1506
				Stichococcus sp. MBIC10465	AB183601	1506
				Stichococcus sp. NB2VFF10	AF513370	1506		no 3' exon sequence
Trebouxia	C	23S	IB4	Trebouxia aggregata	L43542	2262
			IB4	Trebouxia aggregata	L43542	2500
			IA3	Trebouxia aggregata	L43542	2596
	N	16S	IE	Trebouxia arboricola	Z68705	516
			IE	Trebouxia usneae	Z68702	516
			IC1	Trebouxia arboricola	AJ249482	1512
					AJ249564	1512
					AJ249481	1512
					AJ969552	1512
					AJ969509	1512
					Z68704	1512
					AJ969565	1512
					AJ969512	1512
					AJ969581	1512
					AJ969519	1512
					AJ969518	1512
					AJ969609	1512
					AJ969560	1512
					AJ969528	1512
					AJ969520	1512
					AJ969526	1512
					AJ969530	1512
					Z68705	1512
				Trebouxia corticola	AJ249566	1512
				Trebouxia decolorans	AJ969599	1512
					AJ969572	1512
					AJ969569	1512
					AJ969539	1512
					AJ969554	1512
					AJ969556	1512
					AJ969595	1512
					AJ969600	1512
					AJ969603	1512
					AJ970889	1512
					AM159503	1512		unannotated
					AM159210	1512
				Trebouxia galapagensis	AJ249567	1512
				Trebouxia gelatinosa	AJ249569	1512
					AJ249568	1512
					Z68698	1512		str. GRB108
				Trebouxia higginsiae	AJ249574	1512		3' end not clear
				Trebouxia impressa	AJ249570	1512
				Trebouxia jamesii	Z68699	1512
					Z68700	1512
					AJ249571	1512
				Trebouxia sp. 98.003B2	AJ249572	1512
				Trebouxia usneae	AJ249573	1512
				Trebouxia usneae	Z68702	1512
environmental samples	N	16S	IC1	uncultured Trebouxia photobiont	AJ969514	1512
					AJ969580	1512
					AJ969513	1512
					AJ969523	1512
				uncultured Chlorella	AB206546	1367
				uncultured Chlorella	AB206546	1512
			IE	uncultured Chlorella	AB206548	651		intron in variable region near E. coli position 651
					AB206547	651		intron in variable region near E. coli position 651
					AB206546	943
Actinastrum	N	16S	IE	Actinastrum hantzschii	AF288365	516
Botryococcus	N	16S	IC1	Botryococcus braunii	AJ581913	1046
Choricystis	N	16S	IC1	Choricystis minor	AY762605	323
						943
						1046
					X89012	1046		was Nannochloris coccoides
					X89012	1512		was Nannochloris coccoides
					AB109544	1046
					AB109544	1512
				Choricystis sp. 1A1	AF357147	943
					AF357147	1046
					AF357155	1512
				Choricystis sp. 4A3	AF357149	1046
				Choricystis sp. MDL5-9	AY220082	1046
				Choricystis sp. SAG 251-2	X81965	1046
Coccomyxa	N	16S	IE	Coccomyxa pringsheimii	AY762603	516
Coccomyxa	N	16S	IC1	Coccomyxa pringsheimii	AY762603	1512
Neochloris	C	23S	IA1	Neochloris aquatica	L49155	1255
			IB4	Neochloris aquatica	L49155	1931
			IB4	Neochloris aquatica	L49155	2500
			IA3	Neochloris aquatica	L49155	2593
	N	16S	IE	Neochloris aquatica	UNP00779	516		Louise Lewis. J.Phycol. 28:375 (1992).
Urospora	N	16S	IC1	Urospora neglecta	AY476823	943
					AY476824	943
					AY476826	943
					AY476821	1512
					AY476822	1512
				Urospora penicilliformis		1512		LIT: Mol. Biol. Evol. 10(6):1317-1326 (1993).
				Urospora sp. AB58	AY476812	1512
				Urospora sp. U122	AY476820	943
				Urospora sp. U122	AY476820	1512
				Urospora sp. UP52	AY476813	1512
				Urospora wormskioldii	AY476817	943
					AY476817	1512
					AY476814	943
					AY476819	943
					AY476819	1512
					AY476818	1512
					AY476815	1512
					AY476816	1512
Caulerpa	C	16S	IA3	Caulerpa sertularioides	AY389514	508
			IA3	Caulerpa sertularioides	AY389514	793
			I	Caulerpa sertularioides	AY389514	1078
Gloeotilopsis	N	16S	IC1	Gloeotilopsis paucicellularis	Z47997	943		synonym Pleurastrum paucicellulare
						1046		synonym Pleurastrum paucicellulare
						1512		synonym Pleurastrum paucicellulare
				Gloeotilopsis planctonica	Z28970	943	a.I1
Protoderma	N	16S	IC1	Protoderma sarcinoidea	Z47998	943	a.I1
Protoderma	N	16S	IC1	Protoderma sarcinoidea	Z47998	1512
Trichosarcina	C	23S	IB4	Trichosarcina mucosa	AY008341	2500
	C	23S	IA3	Trichosarcina mucosa	AY008341	2593
	N	16S	IC1	Trichosarcina polymorpha	AM087962	1046
Pseudendoclonium	C	23S	IA3	Pseudendoclonium akinetum	AY835431	2593		replaces L44125
	C	23S	IA3	Pseudendoclonium akinetum	AY835431	2593		replaces L44125
	M	23S	IB4	Pseudendoclonium akinetum	AY359242	2500
Streptophyta	Klebsormidium	N	16S	IE	Klebsormidium flaccidum	X75520	516
					Klebsormidium nitens	AJ250112	516
					Klebsormidium nitens	AF408242	516		misannotated
					Klebsormidium subtilissimum	AF408241	516		misannotated
	Mesostigma	M	23S	IB4	Mesostigma viride	AF353999	1931
	Mesostigma	M	23S	IA3	Mesostigma viride	AF353999	2593
	Chara	C	23S	IB4	Chara corallina	AF393579	2500
					Chara sp. CL-2002-1	AF393584	2500
					Chara sp. CL-2002-2	AF393586	2500
					Chara vulgaris	DQ229107	2500
					Chara vulgaris	DQ229107	2500
		M	16S	IA3	Chara sp. Qiu 96222	AF191800	793		incorrect annotation
			16S	IA3	Chara vulgaris	AY267353	793
			23S	IA3	Chara vulgaris	AY267353	779
				IA3	Chara vulgaris	AY267353	2533
				IB4	Chara vulgaris	AY267353	1923
							1931
							2262
							2500
				IB	Chara vulgaris	AY267353	1943
				IB	Chara vulgaris	AY267353	2571
				IB1	Chara vulgaris	AY267353	2584
	Nitella	C	23S	IB4	Nitella sp. CL-2002	AF393603	2500
	Chaetosphaeridium	M	23S	IB4	Chaetosphaeridium globosum	AF494279	1917
	Anthoceros	C	23S	IA3	Anthoceros formosae	AB086179	2593
					Anthoceros formosae	AB073981	2593
					Anthoceros punctatus	AF393576	2593
	Takakia	M	16S	IA3	Takakia lepidozioides	AF058672	793
	Sphagnum	M	16S	IA3	Sphagnum palustre	AF058671	793
	Polytrichum	M	16S	IA3	Polytrichum commune	AF244564	793
	Marchantia	M	16S	IIA	Marchantia polymorpha	M68929	911	a.I2
	Marchantia	M	23S	IIB	Marchantia polymorpha	M68929	787
	Isoetes	M	16S	IA3	Isoetes histrix	AF058669	793
	Closterium	N	16S	IC1	Closterium acerosum	AF352230	1506
					Closterium ehrenbergii	AY148824	1506
						AY148821	1506
						AY148842	1506
						AY148831	1506
						AY148832	1506
						AY148833	1506
						AY148843	1506
						AY148858	1506
						AY148840	1506
						AY148845	1506
						AY148822	1506
						AY148823	1506
						AY148820	1506
						AY148825	1506
						AY148826	1506
						AY148841	1506
						AY148844	1506
						AY148864	1506
						AY148834	1506
						AY148847	1506
						AY148846	1506
						AY148839	1506
						AY148813	1506
						AY148860	1506
						AY148861	1506
						AY148862	1506
						AY148811	1506
						AY148812	1506
						AY148816	1506
						AY148817	1506
AY148808						1506
AY148809						1506
AY148810						1506
AY148859						1506
AY148814						1506
AY148815						1506
AF352228						1506
AY148848						1506
AY148849						1506
AY148850						1506
AY148851						1506
AF115437						1506
AY148818						1506
AY148819						1506
AY148853						1506
AY148835						1506
AY148857						1506
AY148856						1506
AY148855						1506
AY148854						1506
AY148837						1506
AY148852						1506
AY148829						1506
AY148863						1506
AY148830						1506
AY148828						1506
AY148827						1506
AY148838						1506
AY148836						1506
Closterium gracile					AF352237	1506
Closterium incurvum					AF352231	1506
Closterium littorale					AF115438	1506		P3 dosn't match P3'
Closterium navicula					AF352232	1506
Closterium pleurodermatum	AF352238	1506
Closterium selenastrum	AF352242	1506
Closterium tumidum	AF352234	1506
Closterium venus	AF352236	1506
Closterium wallichii	AF352243	1506
Closterium calosporum	N	16S	IC1	Closterium calosporum var. calosporum	AF352225	1506
				Closterium calosporum var. galiciense	AF352239	1506
				Closterium calosporum var. himalayense	AF352229	1506
Closterium moniliferum	N	16S	IC1	Closterium moniliferum var. moniliferum	AF352222	1506
					AY148876	1506
					AY148873	1506
					AY148874	1506
					AF352233	1506
					AF352223	1506
					AY148875	1506
				Closterium moniliferum var. submoniliferum	AY148871	1506
					AY148868	1506
					AY148865	1506
					AF352221	1506
					AY148872	1506
					AY148870	1506
					AY148869	1506
					AY148867	1506
					AY148866	1506
Closterium peracerosum-strigosum-littorale complex	N	16S	IC1	Closterium sp. NIES-52	AF352226	1506
Closterium pusillum	N	16S	IC1	Closterium pusillum var. maius	AF352235	1506
Closterium spinosporum	N	16S	IC1	Closterium spinosporum var. crassum	AF352241	1506
				Closterium spinosporum var. malaysiense	AF352227	1506
				Closterium spinosporum var. ryukyuense	AF352240	1506
				Closterium spinosporum var. spinosporum	AF352224	1506
Cosmarium	N	16S	IC1	Cosmarium botrytis	X77453	1506	a.I1
Cosmocladium	N	16S	IC1	Cosmocladium saxonicum	X79497	1506	a.I1
Sphaerozosma	N	16S	IC1	Sphaerozosma granulatum	X79496	1506	a.I1
Staurastrum	N	16S	IC1	Staurastrum punctulatum	AF115442	1506		P5b cannot be aligned well
				Staurastrum sp. M752	X74752	1506	a.I1
				Staurastrum sp. M753	X77452	1506	a.I1
Genicularia	N	16S	IC1	Genicularia spirotaenia	X74753	1506	a.I1
Gonatozygon	N	16S	IC1	Gonatozygon aculeatum	X91346	1506
Penium	N	16S	IC1	Penium margaritaceum	AF115440	1506
Cylindrocystis	N	16S	IC1	Cylindrocystis brebissonii	AF115439	1506
Mesotaenium	N	16S	IC1	Mesotaenium caldariorum	X75763	1506	a.I1
Mougeotia	N	16S	IC1	Mougeotia scalaris	X70705	1506	a.I1
Sirogonium	N	16S	IC1	Sirogonium sticticum	AF115441	1506
Zygnema	N	16S	IC1	Zygnema circumcarinatum	X79495	1506	a.I1	synonym Zygnemopsis circumcarinata
environmental samples	uncultured eukaryote	environmental samples	N	16S	IC1	uncultured eukaryote	AY082973	1506
							AY082975	1506
							AY082986	1506
stramenopiles	Bacillariophyta	Amphiprora	N	16S	U	Amphiprora paludosa	AY485468	939		spliceosomal
		Amphora	N	16S	U	Amphora coffeaeformis	AY485498	510		spliceosomal
		Amphora	N	16S	U	Amphora coffeaeformis	AY485498	939		spliceosomal
		Leptocylindrus	N	16S	IC1	Leptocylindrus danicus	AY485501	943
		Cymatosira	N	16S	U	Cymatosira belgica	X85387	742		spliceosomal
								939		spliceosomal
								1197		spliceosomal
		Extubocellulus	N	16S	U	Extubocellulus spinifer	AY485504	742		spliceosomal
								939		spliceosomal
								1197		spliceosomal
		Skeletonema	N	23S	IE	Skeletonema pseudocostatum	Y11512	1926
		Nanofrustulum	N	16S	U	Nanofrustulum shiloi	AY485505	510		spliceosomal
		unclassified diatoms	N	16S	U	Heterostegina depressa diatom endosymbiont	AM233868	401		spliceosomal
							AM233868	894		spliceosomal
							AM233869	401		spliceosomal
							AM233869	894		spliceosomal
							AM233870	651		spliceosomal; in variable region ca. E. coli position 651
								742		spliceosomal
								813		spliceosomal
								894		spliceosomal
								939		spliceosomal
							AM233871	813		spliceosomal
							AM233871	894		spliceosomal
	PX clade	Pylaiella	M	23S	IIB	Pylaiella littoralis	AJ277126	575
								1787
								2451
								2509
							Z48620	575	a.I2
								1787	a.I2
								2451	a.I2
								2509	a.I2
	Pelagophyceae	Aureoumbra	N	16S	IC1	Aureoumbra lagunensis	U40258	516	b.I1	annotated as insertion
	environmental samples	environmental samples	N	16S	U	uncultured stramenopile	AF372748	357		spliceosomal
							AF372748	1214		spliceosomal
							AF372749	357		spliceosomal
							AF372749	1214		spliceosomal
							AY179992	939		spliceosomal
							AY179992	1510		spliceosomal
							AY179991	939		spliceosomal
							AY179998	1050		spliceosomal
							AY179993	1197		spliceosomal
							AY180009	1408		spliceosomal

Comparative RNA Web Site and Project The Gutell Lab

Table 4B: Intron Type Data [Expanded View]