Table 4B: Intron Type Data [Expanded View]

query: SELECT phylo,cell_loc,from_gene,rna_class,accession,structure,tax_id,organism,comment,site_pos,seq_size,seq_nbr,gr_id FROM subint WHERE phylo LIKE '%Physcia%' AND (from_gene = '16S' OR from_gene = '23S') AND available = 'Y' AND ready = 'Y' AND ( percentage > 89 OR percentage = -1 OR seq_size = -1 ) ORDER BY phylo,cell_loc,from_gene,site_pos,rna_class,seq_nbr,organism

Phylogeny			Genus	L	EX	RC	Org	Acc	IP	Comment
Eukaryota	Fungi/Metazoa group	Fungi	Amandinea	N	16S	I	Amandinea punctata	AJ549800	788
					16S	I	Amandinea punctata	AJ549800	1049
					23S	I	Amandinea punctata	AY773918	1094
					23S	I	Amandinea punctata	AY773934	2449
			Anaptychia	N	23S	U	Anaptychia runcinata	AY773919	777	spliceosomal; unannotated
			Anaptychia	N	23S	I	Anaptychia runcinata	AY773919	1094
			Buellia	N	16S	I	Buellia aethalea	AJ549801	114
									788
									1516
					23S	I	Buellia aethalea	AY773927	1921
							Buellia alboatra	AY773915	1090
								AY773928	1921
								AY773933	2449
							Buellia geophila	AY773917	779
									1025
									1090
							Buellia griseovirens	AY773910	779
									798
									1025
							Buellia muriformis	AY773925	1025
							Buellia penichra	AY773936	2449
						IE	Buellia alboatra	AY773928	2066
						IE	Buellia geophila	AY787754	2563
						U	Buellia capitis-regum	AF457572	1929	spliceosomal
						U	Buellia muriformis	AF457571	2076	spliceosomal
			Dimelaena	N	23S	IE	Dimelaena oreina	AY773940	2563
			Diplotomma	N	16S	I	Diplotomma alboatrum	AJ549802	287
									300
									497	intron in variable region ca E.coli position 497
									516
									788
									940
									1199
									1210
									1516
							Diplotomma epipolium	AJ506969	287
									300
									516
									788
									940
									1199
									1210
									1516
					23S	I	Diplotomma alboatrum	AY452500	779
							Diplotomma alboatrum	AY452500	1090
							Diplotomma epipolium	AY773916	779
							Diplotomma epipolium	AY773916	1090
			Hyperphyscia	N	16S	U	Hyperphyscia adglutinata	AJ549803	265	spliceosomal
						U	Hyperphyscia adglutinata	AJ549803	300	spliceosomal
						I	Hyperphyscia adglutinata	AJ549803	287
									516
									940
									1049
									1210
									1516
			Phaeophyscia	N	16S	I	Phaeophyscia ciliata	AF224448	1506
								AF224448	1516
								AF224447	1506
								AF224447	1516
								AF224457	1506
								AF224457	1516
								AF224455	1506
								AF224455	1516
								AF224354	1506
1516								AF224354
AF224456	1506
AF224456	1516
AF224450	1506
AF224450	1516
AF224454	1506
AF224454	1516
Phaeophyscia constipata	AF224374	1506
Phaeophyscia constipata	AF224374	1516
Phaeophyscia endococcina	AF224444	1506
Phaeophyscia endophoenicea	AF224445	1506
Phaeophyscia hispidula	AY648103	287
		788
		1199
		1210
		1384
	AY303138	1506						5' end of intron missing from GB entry
	AY303138	1516
Phaeophyscia nigricans	AF224375	1516
Phaeophyscia orbicularis	AJ549804	114
		287
		299
	AJ549805	788
		943
		1199
		1210
		1384
		1506
		1516
	AF224449	1506
	AF224449	1516
	AF224451	1506
	AF224451	1516
	AF224460	1506
	AF224460	1516
	AF224459	1506
	AF224459	1516
	AF224458	1506
	AF224458	1516
	AF224453	1506
	AF224453	1516
	AF224452	1506
	AF224452	1516
Phaeophyscia sciastra	AF224446	1506
U	Phaeophyscia orbicularis	AJ549804				331		spliceosomal
23S	I	Phaeophyscia orbicularis			AY773926	1090
Physcia	N	16S	I	Physcia adscendens	AF224422	1516
					AF224430	1516
					AF224423	1516
				Physcia aipolia	AY648096	114
						516
						788
						943
					AY648097	114
						516
						788
						943
					AY648101	516
						788
						943
					DQ782876	516
					DQ782876	788
					AY648099	788
						1049
						1199
						1210
					AF224396	1516
					AY303132	1516
					AF224383	1516
					AY303133	1516
					AF224395	1516
					AF224391	1516
					AF224390	1516
					AF224397	1516
					AY303136	1516
					AF224431	1516
					AY303135	1516
					AF224432	1516
					AF224393	1516
					AF224398	1516
					AF224392	1516
					AF224394	1516
				Physcia albinea	AF224433	1516
				Physcia alnophila	AF224434	1516
					AF224381	1516
					AF224380	1516
					AF224382	1516
				Physcia biziana	AF224417	1516
				Physcia caesia	AY648098	114
						516
						788
						1210
					AY648100	516
						788
						943
						1049
						1210
					AF224435	1516
					AF224438	1516
					AY498690	1516
					AF224436	1516
					AF224386	1516
					AF224437	1516
					AF224388	1516
					AF224379	1516
					AF224389	1516
					AY303134	1516
					AY303131	1516
					AF224385	1516
					AF224384	1516
AF224387	1516
Physcia dimidiata	AJ506970	516
	AJ506970	788
	AJ506970 AJ507615	1199		implicit from annotations
	AJ507615	1210
Physcia dubia	AF224413	1516
	AF224399	1516
	AF224420	1516
	AF224419	1516
	AF224418	1516
	AF224403	1516
	AF224402	1516
	AF224400	1516
	AF224401	1516
	AF224439	1516
	AF224440	1516
	AF224412	1516
	AF224411	1516
	AF224421	1516
Physcia leptalea	AF224441	1516
	AF224428	1516
	AF224429	1516
Physcia magnussonii	AF224376	1516
Physcia magnussonii	AF224377	1516
Physcia phaea	AF224378	1516
Physcia stellaris	AY648102	516
		788
		1049
		1210
	AF224409	1516
	AF224408	1516
	AF224410	1516
	AY303137	1516
	AF224442	1516
	AF224407	1516
	AF224405	1516
	AF224404	1516
	AF224406	1516
	AY498689	1516
Physcia undulata	AJ549806	114
		516
		788
		1389
		1506
		1516
U	Physcia aipolia	U64686	330		spliceosomal
	Physcia undulata	AJ549806	299		spliceosomal
			393		spliceosomal
			674		spliceosomal
			883		spliceosomal
			939		spliceosomal
23S	U	Physcia aipolia	AY773914	678		spliceosomal
				1054		spliceosomal
				1092		spliceosomal
			AY773929	1903		spliceosomal
			AY773929	1929		spliceosomal; unannotated
	I	Physcia aipolia	AY773914	779
			AY773914	798
			DQ782904	1090
			AY773929	1921
		Physcia stellaris	AY773912	779
				798
				1094
		Physcia tenella	AY773908	779
				798
				1094
	IE	Physcia aipolia	AY773929	2066
Physcia dimidiata	N	16S	I	Physcia dimidiata var. dimidiata	AF224415	1516
				Physcia dimidiata var. dimidiata	AF224416	1516
				Physcia dimidiata var. ornata	AF224414	1516
Physcia tenella	N	16S	I	Physcia tenella var. marina	AF224426	1516
				Physcia tenella var. marina	AF224424	1516
				Physcia tenella var. tenella	AF224427	1516
				Physcia tenella var. tenella	AF224425	1516
Physconia	N	16S	U	Physconia detersa	AJ240485	297		spliceosomal
					AJ240492	331		spliceosomal
					AJ240495	674		spliceosomal
					AJ240498	883		spliceosomal
					AJ240504	939		spliceosomal
					AJ240509	1229		spliceosomal
				Physconia distorta	AJ240484	297		spliceosomal
					AJ240491	331		spliceosomal
					AJ240494	674		spliceosomal
					AJ240497	883		spliceosomal
					AJ240502	939		spliceosomal
					AJ240508	1229		spliceosomal
				Physconia elegantula	AJ240487	298		spliceosomal
					AJ240489	331		spliceosomal
					AJ240501	939		spliceosomal
					AJ240507	1229		spliceosomal
				Physconia enteroxantha	AJ240486	297		spliceosomal
				Physconia grisea	AJ240503	939		spliceosomal
				Physconia kurokawae	AJ240496	674		spliceosomal
					AJ240499	883		spliceosomal
					AJ240505	939		spliceosomal
					AJ240510	1229		spliceosomal
				Physconia perisidiosa	AJ240488	298		spliceosomal
					AJ240490	331		spliceosomal
					AJ240512	1229		spliceosomal
				Physconia venusta	AJ240500	883		spliceosomal
					AJ240506	939		spliceosomal
					AJ240511	1229		spliceosomal
		23S	I	Physconia distorta	AY773913	798
						1025
						1094
					AY773930	1921
				Physconia enteroxantha	AY773909	779
						798
						1025
					AF457573	1921
					AY773931	1921
					AY773937	2449
				Physconia grisea	AY773921	779
						1025
						1094
				Physconia perisidiosa	AY773911	798
				Physconia perisidiosa	AY773911	1094
			U	Physconia enteroxantha	AF457573	1903		spliceosomal
			U	Physconia enteroxantha	AY773931	1903		spliceosomal
Rinodina	N	23S	I	Rinodina atrocinerea	AY773923	779
					AY773923	1094
					AY773932	1921
					AY773932	2069
				Rinodina capensis	AY773924	779
					AY773924	1025
					AY773938	2449
				Rinodina milvina	AY773922	779
						1025
						1094
				Rinodina tunicata	AF457568	800
					AY773920	800
						1025
						1094
					AF457569	1094
					AY773939	2449
			IE	Rinodina capensis	AY773938	2563
			IE	Rinodina tunicata	AY773939	2563
			U	Rinodina tunicata	AF457568	777		spliceosomal
					AY773920	777		spliceosomal
					AY773920	1054		spliceosomal; misannotated
					AF457569	1054		spliceosomal
		16S	I	Rinodina gennarii	AJ549808	287
						943
						1516
				Rinodina oxydata	AJ506971	114
						497
						516
						940
						1199
						1389
						1516
Tornabea	N	16S	I	Tornabea scutellifera	AJ549810	788
						943
						1199
						1516

Comparative RNA Web Site and Project The Gutell Lab

Table 4B: Intron Type Data [Expanded View]