query: SELECT phylo,cell_loc,from_gene,rna_class,accession,structure,tax_id,organism,comment,site_pos,seq_size,seq_nbr,gr_id FROM subint WHERE phylo LIKE '%Streptophyta%' AND (from_gene = '16S' OR from_gene = '23S') AND available = 'Y' AND ready = 'Y' AND ( percentage > 89 OR percentage = -1 OR seq_size = -1 ) ORDER BY phylo,cell_loc,from_gene,site_pos,rna_class,seq_nbr,organism

Table 4B View:    

Structure File Format:     

Phylogeny Genus L EX RC Org Acc IP Struct. Comment
Eukaryota Viridiplantae Streptophyta Klebsormidium N 16S IE Klebsormidium flaccidum X75520
516    
Klebsormidium nitens AJ250112
516    
AF408242
516   misannotated
Klebsormidium subtilissimum AF408241
516   misannotated
Mesostigma M 23S IB4 Mesostigma viride AF353999
1931    
IA3 Mesostigma viride AF353999
2593    
Chara C 23S IB4 Chara corallina AF393579
2500    
Chara sp. CL-2002-1 AF393584
2500    
Chara sp. CL-2002-2 AF393586
2500    
Chara vulgaris DQ229107
2500    
DQ229107
2500    
M 16S IA3 Chara sp. Qiu 96222 AF191800
793   incorrect annotation
Chara vulgaris AY267353
793    
23S IA3 Chara vulgaris AY267353
779    
2533    
IB4 Chara vulgaris AY267353
1923    
1931    
2262    
2500    
IB Chara vulgaris AY267353
1943    
2571    
IB1 Chara vulgaris AY267353
2584    
Nitella C 23S IB4 Nitella sp. CL-2002 AF393603
2500    
Chaetosphaeridium M 23S IB4 Chaetosphaeridium globosum AF494279
1917    
Anthoceros C 23S IA3 Anthoceros formosae AB073981
2593    
AB086179
2593    
Anthoceros punctatus AF393576
2593    
Takakia M 16S IA3 Takakia lepidozioides AF058672
793    
Sphagnum M 16S IA3 Sphagnum palustre AF058671
793    
Polytrichum M 16S IA3 Polytrichum commune AF244564
793    
Marchantia M 16S IIA Marchantia polymorpha M68929
911 a.I2  
23S IIB Marchantia polymorpha M68929
787    
Isoetes M 16S IA3 Isoetes histrix AF058669
793    
Closterium N 16S IC1 Closterium acerosum AF352230
1506    
Closterium ehrenbergii AY148826
1506    
AY148836
1506    
AY148835
1506    
AY148834
1506    
AY148864
1506    
AY148844
1506    
AY148841
1506    
AY148863
1506    
AY148825
1506    
AY148824
1506    
AY148823
1506    
AY148827
1506    
AY148828
1506    
AY148830
1506    
AY148829
1506    
AY148852
1506    
AY148837
1506    
AY148853
1506    
AY148854
1506    
AY148855
1506    
AY148856
1506    
AY148857
1506    
AY148838
1506    
AY148859
1506    
AY148813
1506    
AY148810
1506    
AY148809
1506    
AY148808
1506    
AY148846
1506    
AY148847
1506    
AY148839
1506    
AY148840
1506    
AY148858
1506    
AY148845
1506    
AY148860
1506    
AY148822
1506    
AY148861
1506    
AY148862
1506    
AY148811
1506    
AY148812
1506    
AY148816
1506    
AY148817
1506    
AY148815
1506    
AY148843
1506    
AY148833
1506    
AY148832
1506    
AY148831
1506    
AY148842
1506    
AY148821
1506    
AY148820
1506    
AY148819
1506    
AY148818
1506    
AF115437
1506    
AY148851
1506    
AY148850
1506    
AY148849
1506    
AY148848
1506    
AF352228
1506    
AY148814
1506    
Closterium gracile AF352237
1506    
Closterium incurvum AF352231
1506    
Closterium littorale AF115438
1506   P3 dosn't match P3'
Closterium navicula AF352232
1506    
Closterium pleurodermatum AF352238
1506    
Closterium selenastrum AF352242
1506    
Closterium tumidum AF352234
1506    
Closterium venus AF352236
1506    
Closterium wallichii AF352243
1506    
Closterium calosporum N 16S IC1 Closterium calosporum var. calosporum AF352225
1506    
Closterium calosporum var. galiciense AF352239
1506    
Closterium calosporum var. himalayense AF352229
1506    
Closterium moniliferum N 16S IC1 Closterium moniliferum var. moniliferum AY148876
1506    
AY148873
1506    
AF352222
1506    
AY148875
1506    
AY148874
1506    
AF352233
1506    
AF352223
1506    
Closterium moniliferum var. submoniliferum AY148868
1506    
AY148866
1506    
AY148867
1506    
AY148869
1506    
AY148870
1506    
AY148872
1506    
AF352221
1506    
AY148865
1506    
AY148871
1506    
Closterium peracerosum-strigosum-littorale complex N 16S IC1 Closterium sp. NIES-52 AF352226
1506    
Closterium pusillum N 16S IC1 Closterium pusillum var. maius AF352235
1506    
Closterium spinosporum N 16S IC1 Closterium spinosporum var. crassum AF352241
1506    
Closterium spinosporum var. malaysiense AF352227
1506    
Closterium spinosporum var. ryukyuense AF352240
1506    
Closterium spinosporum var. spinosporum AF352224
1506    
Cosmarium N 16S IC1 Cosmarium botrytis X77453
1506 a.I1  
Cosmocladium N 16S IC1 Cosmocladium saxonicum X79497
1506 a.I1  
Sphaerozosma N 16S IC1 Sphaerozosma granulatum X79496
1506 a.I1  
Staurastrum N 16S IC1 Staurastrum punctulatum AF115442
1506   P5b cannot be aligned well
Staurastrum sp. M752 X74752
1506 a.I1  
Staurastrum sp. M753 X77452
1506 a.I1  
Genicularia N 16S IC1 Genicularia spirotaenia X74753
1506 a.I1  
Gonatozygon N 16S IC1 Gonatozygon aculeatum X91346
1506    
Penium N 16S IC1 Penium margaritaceum AF115440
1506    
Cylindrocystis N 16S IC1 Cylindrocystis brebissonii AF115439
1506    
Mesotaenium N 16S IC1 Mesotaenium caldariorum X75763
1506 a.I1  
Mougeotia N 16S IC1 Mougeotia scalaris X70705
1506 a.I1  
Sirogonium N 16S IC1 Sirogonium sticticum AF115441
1506    
Zygnema N 16S IC1 Zygnema circumcarinatum X79495
1506 a.I1 synonym Zygnemopsis circumcarinata