Table 4B: Intron Type Data [Expanded View]

query: SELECT phylo,cell_loc,from_gene,rna_class,accession,structure,tax_id,organism,comment,site_pos,seq_size,seq_nbr,gr_id FROM subint WHERE phylo LIKE '%Viridiplantae%' AND (from_gene = '16S' OR from_gene = '23S') AND available = 'Y' AND ready = 'Y' AND ( percentage > 89 OR percentage = -1 OR seq_size = -1 ) ORDER BY phylo,cell_loc,from_gene,site_pos,rna_class,seq_nbr,organism

Phylogeny			Genus	L	EX	RC	Org	Acc	IP	Struct.	Comment
Eukaryota	Viridiplantae	Chlorophyta	Stigeoclonium	C	16S	IA3	Stigeoclonium helveticum	DQ630521	793
					23S	IA3	Stigeoclonium helveticum	L49157	730
						IA1	Stigeoclonium helveticum	L49157	1065
						IB4	Stigeoclonium helveticum	L49157	1923
						IB4	Stigeoclonium helveticum	L49157	2500
			Carteria	C	23S	IB4	Carteria lunzensis	L42986	1923
						IA3	Carteria lunzensis	L42986	2593
						IA3	Carteria olivieri	L43500	2593
						IA1	Carteria olivieri	L43500	2449
			Chlamydomonas	C	23S	IA3	Chlamydomonas agloeformis	L43351	2593
							Chlamydomonas callosa	L43501	2593
							Chlamydomonas mexicana	L49148	2593
							Chlamydomonas monadina	L49149	2596
							Chlamydomonas nivalis	L42990	2593
							Chlamydomonas peterfii	L43538	2593
							Chlamydomonas reinhardtii	FJ423446	2593
								X01977	2593
								FJ423446	2593
						IB	Chlamydomonas applanata	L06107	2500		synonym Chlamydomonas humicola
						IB4	Chlamydomonas applanata	L42989	2500		synonym Chlamydomonas humicola
							Chlamydomonas callosa	L43501	1931
							Chlamydomonas callosa	L43501	2262
							Chlamydomonas frankii	L43352	1931
									2262
									2500
							Chlamydomonas geitleri	L43353	1931
							Chlamydomonas komma	L43502	1931
							Chlamydomonas mexicana	L49148	1931
							Chlamydomonas monadina	L49149	1923
									2262
									2500
							Chlamydomonas mutabilis	L42859	1923
							Chlamydomonas sp. SAG 66.72	L43539	2262
							Chlamydomonas starrii	L43504	2500
							Chlamydomonas zebra	L43356	2500
						IA1	Chlamydomonas callosa	L43501	958
							Chlamydomonas callosa	L43501	1255
							Chlamydomonas frankii	L43352	1255
							Chlamydomonas komma	L43502	1255
							Chlamydomonas pseudopertusa	L43355	2449
							Chlamydomonas sp. SAG 66.72	L43539	1065
							Chlamydomonas sp. SAG 66.72	L43539	2449
						I	Chlamydomonas indica	Z17228	730		LIT: J. Mol. Biol. 232:446-467 (1993).
									958		LIT: J. Mol. Biol. 232:446-467 (1993).
									1065		LIT: J. Mol. Biol. 232:446-467 (1993).
									1923		LIT: J. Mol. Biol. 232:446-467 (1993).
									2596		LIT: J. Mol. Biol. 232:446-467 (1993).
					16S	IA3	Chlamydomonas moewusii	X15850	531
				M	23S	IA1	Chlamydomonas moewusii	M90640	2449
			Halosarcinochlamys	N	23S	IC1	Halosarcinochlamys cherokeensis	DQ015760	798		misannotated; synonym: chlamydomonad sp. SPMO-BS
			Lobochlamys	C	16S	IA3	Lobochlamys segnis	L39865	508		synonym Chlamydomonas pallidostigmatica
					16S	IA3	Lobochlamys segnis	L39865	793		synonym Chlamydomonas pallidostigmatica
					23S	IB4	Lobochlamys segnis	L43503	1923		synonym Chlamydomonas pallidostigmatica
									1931		synonym Chlamydomonas pallidostigmatica
									2262		synonym Chlamydomonas pallidostigmatica
						IB	Lobochlamys segnis	L36830	1931	a.I1	synonym Chlamydomonas pallidostigmatica
						IA1	Lobochlamys segnis	L43503	2449		synonym Chlamydomonas pallidostigmatica
						IA3	Lobochlamys segnis	L43503	2596		synonym Chlamydomonas pallidostigmatica
				N	16S	IC1	Lobochlamys segnis	AJ410456	1512		synonym Chlamydomonas segnis
			Dunaliella	N	16S	IC1	Dunaliella bardawil	AF150905	943
							Dunaliella bardawil	AF150905	1512
							Dunaliella parva	M62998	943	a.I1
							Dunaliella parva	M62998	1512	a.I1
							Dunaliella salina	M84320	943	a.I1
UNP00875	943
DQ447648	943
23S	IC1	Dunaliella sp. SPMO 980625-1E			DQ015750	798		misannotated; synonym: Dunaliella sp. SPMO
23S	IC1	Dunaliella viridis			DQ015754	798		misannotated
C	23S	IA1		Dunaliella parva	L43540	1065
		IA1		Dunaliella parva	L43540	2449
		IB4		Dunaliella parva	L43540	1931
		IB4		Dunaliella parva	L43540	2500
Chlorogonium	C	23S	IB4	Chlorogonium elongatum	L42860	1923
Haematococcus	C	23S	IA3	Haematococcus lacustris	L49151	730
			IA3	Haematococcus lacustris	L49151	2593
			IA1	Haematococcus lacustris	L49151	1065
			IB4	Haematococcus lacustris	L49151	1931
Characium	N	16S	IC1	Characium saccatum	M84319	1512	a.I1
Chlorococcum	C	23S	IA1	Chlorococcum echinozygotum	L44123	1766
			IA1	Chlorococcum echinozygotum	L44123	2449
			IB4	Chlorococcum echinozygotum	L44123	1923
			IA3	Chlorococcum echinozygotum	L44123	2596
Dictyochloris	N	16S	IC1	Dictyochloris fragrans	AF367860	40
						943
						1512
					AF367861	943
				Dictyochloris pulchra	AF367862	40
						943
						1512
		23S	IC1	Dictyochloris fragrans	AY206712	798
		23S	IC1	Dictyochloris pulchra	AY206713	798
Mychonastes	N	16S	IE	Mychonastes sp. 5C5	AF357153	516
Pseudomuriella	N	16S	IE	Pseudomuriella aurantiaca	AB005748	516		misspelling Muriella aurantica
Pseudomuriella	N	16S	IE	Pseudomuriella aurantiaca	X91268	516		misspelling Muriella aurantica
Radiococcus	N	16S	IE	Radiococcus polycoccus	AY044649	516		synonym Coenochloris polycocca
			IE	Radiococcus polycoccus	AY044650	516		synonym Coenochloris polycocca
			IC1	Radiococcus polycoccus	AY044650	1046		synonym Coenochloris polycocca
Chlorosarcina	C	23S	IB4	Chlorosarcina brevispinosa	L49150	1917
			IB4	Chlorosarcina brevispinosa	L49150	1931
			IA3	Chlorosarcina brevispinosa	L49150	1951
			IA3	Chlorosarcina brevispinosa	L49150	2596
			IA1	Chlorosarcina brevispinosa	L49150	2449
Oedogonium	C	23S	IB4	Oedogonium cardiacum	EU677193	1931
			IB4	Oedogonium cardiacum	EU677193	1931
			IA3	Oedogonium cardiacum	EU677193	2596
			IA3	Oedogonium cardiacum	EU677193	2596
Coelastrella	N	16S	IE	Coelastrella multistriata	AB012846	516		missing 3' end of intron -- only 50% complete
Coelastrella	N	16S	IC1	Coelastrella multistriata	AB012846	943		missing 3'end of intron
Coelastrella multistriata	N	16S	IE	Coelastrella multistriata var. corcontica	AB037082	516
Coelastrella multistriata	N	16S	IC1	Coelastrella multistriata var. corcontica	AB037082	943
Coelastrum	N	16S	IC1	Coelastrum astroideum	AF388380	943
				Coelastrum pseudomicroporum	AF388381	651		intron in variable region near E. coli position 651
						1046
						1512
			IE	Coelastrum pseudomicroporum	AF388381	516
Desmodesmus	N	16S	IC1	Desmodesmus pirkollei	AF348496	943
Hariotina	N	16S	IE	Hariotina reticulata	AF388382	516		synonym Coelastrum reticulatum
Neodesmus	N	16S	IC1	Neodesmus danubialis	AB037086	323
Neodesmus	N	16S	IC1	Neodesmus danubialis	AB037086	1046
Pseudodidymocystis	N	16S	IC1	Pseudodidymocystis planctonica	AB037087	40
						943
						1139		intron in variable region near E. coli position 1139
			IE	Pseudodidymocystis planctonica	AB037087	516
Scenedesmus arcuatus	N	16S	IC1	Scenedesmus arcuatus var. platydiscus	AY170312	156
Scenedesmus	C	23S	IB4	Scenedesmus obliquus	L43360	1923
	C	23S	IA3	Scenedesmus obliquus	L43360	2593
	M	16S	IIB	Scenedesmus obliquus	AJ277428	967
					AF204057	967
					X17375	967
		23S	IIB	Scenedesmus obliquus	AF204057	2455
			IIB	Scenedesmus obliquus	X17375	2455	a.I2
			IA1	Scenedesmus obliquus	X17375	2504
			IA1	Scenedesmus obliquus	AF204057	2504
	N	16S	IC1	Scenedesmus producto-capitatus	X91266	943
				Scenedesmus pupukensis	X91267	323		was Kermatia pupukensis
				Scenedesmus pupukensis	X91267	943		was Kermatia pupukensis
				Scenedesmus sp. CCMP 1625	AF339735	943
			IE	Scenedesmus sp. CCMP 1625	AF339735	516
Schroederiella	N	16S	IC1	Schroederiella apiculata	AB037098	943
Scotiellopsis	N	16S	IE	Scotiellopsis oocystiformis	AB012848	568		missing P8' to 3' end of int.
Scotiellopsis	N	16S	IC1	Scotiellopsis terrestris	AB012847	943
Tetradesmus	N	16S	IC1	Tetradesmus wisconsinensis	AB037097	943		synonym Scenedesmus wisconsinensis
unclassified Scenedesmaceae	N	16S	IC1	coccoid green alga JL 4-10	AY195982	943
Ankistrodesmus	N	16S	IC1	Ankistrodesmus gracilis	AY846371	943
				Ankistrodesmus sp. NDem 9/21 T-6w	AY846374	943
				Ankistrodesmus sp. NDem 9/21 T-6w	AY846374	1139		intron in variable region near E. coli position 1139
				Ankistrodesmus stipitatus	X56100	1046	a.I1
	C	23S	IB4	Ankistrodesmus stipitatus	L42984	1923
	C	23S	IB4	Ankistrodesmus stipitatus	L42984	2500
Kirchneriella	N	16S	IC1	Kirchneriella aperta	AJ271859	156
						943
						1046
			IE	Kirchneriella aperta	AJ271859	516
Monoraphidium	N	16S	IE	Monoraphidium contortum	AY846375	516
			IE	Monoraphidium terrestre	Y17817	516
			IC1	Monoraphidium contortum	AY846375	943
				Monoraphidium minutum	AY846380	943
				Monoraphidium minutum	AY846380	1046
				Monoraphidium saxatile	AY846384	943
				Monoraphidium terrestre	Y17817	943
						1046
						1512
Podohedriella	N	16S	IE	Podohedriella falcata	X97352	516		synonym Ankistrodesmus falcatus
Quadrigula	N	16S	IE	Quadrigula closterioides	Y17924	516
Quadrigula	N	16S	IC1	Quadrigula closterioides	Y17924	943
Raphidocelis	N	16S	IC1	Raphidocelis subcapitata	AY846381	651		intron in variable region near E. coli position 651
						943
						1046
Selenastrum	N	16S	IC1	Selenastrum capricornutum	AF169628	156
						170
						943
						1046
						1139		intron in variable region near E. coli position 1139
						1512
Schroederia	N	16S	IC1	Schroederia setigera	AF277650	943
Tetraedron	N	16S	IE	Tetraedron minimum	AY663042	516
Tetraedron	N	16S	IC1	Tetraedron minimum	AY663042	943
Sphaeropleales incertae sedis	N	16S	IE	Botryococcus sp. UTEX 2629	AJ581914	516
Sphaeropleales incertae sedis	N	16S	IC1	Botryococcus sp. UTEX 2629	AJ581914	1512
Bracteacoccus	N	16S	IE	Bracteacoccus sp. BC2-1	AF516676	516
Oltmannsiellopsis	C	23S	IB4	Oltmannsiellopsis viridis	DQ291132	1931
					DQ291132	2500
					DQ291132	1931
					DQ291132	2500
			IA3	Oltmannsiellopsis viridis	DQ291132	2593
			IA3	Oltmannsiellopsis viridis	DQ291132	2593
	M	23S	IB4	Oltmannsiellopsis viridis	DQ365900	2500
Pedinomonas	M	23S	IIB	Pedinomonas minor	AF116775	1787
	C	23S	IB4	Pedinomonas tuberculata	L43541	1931
			IB4	Pedinomonas tuberculata	L43541	2500
			IA1	Pedinomonas tuberculata	L43541	2449
Scherffelia	C	23S	IA3	Scherffelia dubia	L44126	2593
Scherffelia	C	23S	IA3	Scherffelia dubia	AF393609	2593
Monomastix	C	23S	IB4	Monomastix sp. M722	L44124	1931
				Monomastix sp. OKE-1	L49154	1931		synonym Monomastix sp. CL-1997
				Monomastix sp. OKE-1	L49154	2500		synonym Monomastix sp. CL-1997
			IA3	Monomastix sp. M722	L44124	1951
				Monomastix sp. M722	L44124	2593
				Monomastix sp. OKE-1	L49154	1951		synonym Monomastix sp. CL-1997
				Monomastix sp. OKE-1	L49154	2593		synonym Monomastix sp. CL-1997
	M	23S	IB4	Monomastix sp. M722	AY008340	1931		IP noted by authors in manuscript
	M	23S	IB4	Monomastix sp. OKE-1	AY008339	1931		IP noted by authors in manuscript
Nephroselmis	M	23S	IB	Nephroselmis olivacea	AF110138	1931
			IA3	Nephroselmis olivacea	AF110138	2500
			IA3	Nephroselmis olivacea	AF110138	2593
Pterosperma	C	23S	IB4	Pterosperma cristatum	L43359	1931
Chlorella	N	16S	IE	Chlorella pyrenoidosa	AB240151	516
				Chlorella sp. 2A3	AF357146	516
				Chlorella sp. AN 1-3	AY195964	651		intron in variable region near E. coli position 651
				Chlorella sp. MBIC10744	AB183634	516
				Chlorella sp. MRBG1	AB219527	943
				'Chlorella' luteoviridis	X73998	516		synonym Chlorella luteoviridis
				'Chlorella' luteoviridis	X73997	516		synonym Chlorella luteoviridis
				'Chlorella' saccharophila	X73991	516		synonym Chlorella saccharophila
				'Chlorella' saccharophila	AB058310	516
				Chlorella sp. BC4-VF9	AF516675	516
			IC1	Chlorella sorokiniana	X73993	323	a.I1
				Chlorella sorokiniana	X73993	1046	b.I1
				Chlorella sp. MBIC10043	AB183579	943
				Chlorella sp. MBIC10744	AB183634	156
				Chlorella sp. MBIC10747	AB183635	943
				Chlorella sp. MRBG1	AB219527	1367
				Chlorella sp. MRBG1	AB219527	1512
				Chlorella trebouxioides	AB006048	156
				'Chlorella' luteoviridis	X73998	1052	a.I1	synonym Chlorella luteoviridis
				'Chlorella' mirabilis	X74000	1506	a.I1	synonym Chlorella mirabilis
				'Chlorella' saccharophila	AB058310	156	b.I1
					AB058300	943
					AB058301	943
					AB183575	943
					AB183576	943
					AB183577	943
					AB183578	943
				Chlorella sp. MDL4-3	AY197631	156
	C	23S	IA3	Chlorella vulgaris	L43357	2593
	C	23S	IA3	Chlorella vulgaris	AB001684	2593
	M	23S	IB4	Chlorella vulgaris	AY008337	1931		IP noted by authors in manuscript
	M	23S	IA3	Chlorella vulgaris	AY008338	1951		IP noted by authors in manuscript
Closteriopsis	C	16S	IA3	Closteriopsis acicularis	Y17632	508		was Chlorella acicularis
Prototheca	M	23S	IA1	Prototheca wickerhamii	X68722	2449
Prototheca	M	23S	IA1	Prototheca wickerhamii	X68722	2504
Koliella	N	16S	IE	Koliella spiculiformis	AF278744	516
			IC1	Koliella spiculiformis	AF278744	943
			IC1	Koliella sempervirens	AF278743	1506
Amphikrikos	N	16S	IC1	Amphikrikos cf. nanus Hegewald 1995-26	AF228690	156		synonym Amphikrikos sp. Hegewald 1995-26
						651		intron in variable region near E. coli position 651; synonym Amphikrikos sp. Hegewald 1995-26
						1139		intron in variable region near E. coli position 1139; synonym Amphikrikos sp. Hegewald 1995-26
			IE	Amphikrikos cf. nanus Hegewald 1995-26	AF228690	516		synonym Amphikrikos sp. Hegewald 1995-26
Oocystis	N	16S	IC1	Oocystis heteromucosa	AF228689	943
Stichococcus	N	16S	IE	Stichococcus bacillaris	AB055864	516
			IE	Stichococcus sp. MBIC10457	AB183599	516
			IC1	Stichococcus bacillaris	AB055865	943
					AB055865	1506
					AB055864	943
					AB055864	1506
					AB055866	1506
				Stichococcus sp. BCP-SRS2-14	AY377441	943
				Stichococcus sp. MBIC10457	AB183599	943
				Stichococcus sp. MBIC10457	AB183599	1506
				Stichococcus sp. MBIC10465	AB183601	1506
				Stichococcus sp. NB2VFF10	AF513370	1506		no 3' exon sequence
Trebouxia	C	23S	IB4	Trebouxia aggregata	L43542	2262
			IB4	Trebouxia aggregata	L43542	2500
			IA3	Trebouxia aggregata	L43542	2596
	N	16S	IE	Trebouxia arboricola	Z68705	516
			IE	Trebouxia usneae	Z68702	516
			IC1	Trebouxia arboricola	AJ969509	1512
					AJ969552	1512
					AJ249481	1512
					AJ249564	1512
					AJ249482	1512
					Z68704	1512
					AJ969565	1512
					AJ969512	1512
					AJ969581	1512
					AJ969519	1512
					AJ969518	1512
					AJ969609	1512
					AJ969560	1512
					AJ969528	1512
					AJ969520	1512
					AJ969526	1512
					AJ969530	1512
					Z68705	1512
				Trebouxia corticola	AJ249566	1512
				Trebouxia decolorans	AM159210	1512
					AJ969572	1512
					AJ969569	1512
					AJ969539	1512
					AJ969554	1512
					AJ969556	1512
					AJ969595	1512
					AJ969599	1512
					AJ969600	1512
					AJ969603	1512
					AJ970889	1512
					AM159503	1512		unannotated
				Trebouxia galapagensis	AJ249567	1512
				Trebouxia gelatinosa	AJ249568	1512
					AJ249569	1512
					Z68698	1512		str. GRB108
				Trebouxia higginsiae	AJ249574	1512		3' end not clear
				Trebouxia impressa	AJ249570	1512
				Trebouxia jamesii	Z68699	1512
					Z68700	1512
					AJ249571	1512
				Trebouxia sp. 98.003B2	AJ249572	1512
				Trebouxia usneae	AJ249573	1512
				Trebouxia usneae	Z68702	1512
environmental samples	N	16S	IC1	uncultured Trebouxia photobiont	AJ969513	1512
					AJ969523	1512
					AJ969514	1512
					AJ969580	1512
				uncultured Chlorella	AB206546	1367
				uncultured Chlorella	AB206546	1512
			IE	uncultured Chlorella	AB206548	651		intron in variable region near E. coli position 651
					AB206547	651		intron in variable region near E. coli position 651
					AB206546	943
Actinastrum	N	16S	IE	Actinastrum hantzschii	AF288365	516
Botryococcus	N	16S	IC1	Botryococcus braunii	AJ581913	1046
Choricystis	N	16S	IC1	Choricystis minor	AY762605	323
						943
						1046
					X89012	1046		was Nannochloris coccoides
					X89012	1512		was Nannochloris coccoides
					AB109544	1046
					AB109544	1512
				Choricystis sp. 1A1	AF357147	943
					AF357147	1046
					AF357155	1512
				Choricystis sp. 4A3	AF357149	1046
				Choricystis sp. MDL5-9	AY220082	1046
				Choricystis sp. SAG 251-2	X81965	1046
Coccomyxa	N	16S	IE	Coccomyxa pringsheimii	AY762603	516
Coccomyxa	N	16S	IC1	Coccomyxa pringsheimii	AY762603	1512
Neochloris	C	23S	IA1	Neochloris aquatica	L49155	1255
			IB4	Neochloris aquatica	L49155	1931
			IB4	Neochloris aquatica	L49155	2500
			IA3	Neochloris aquatica	L49155	2593
	N	16S	IE	Neochloris aquatica	UNP00779	516		Louise Lewis. J.Phycol. 28:375 (1992).
Urospora	N	16S	IC1	Urospora neglecta	AY476823	943
					AY476824	943
					AY476826	943
					AY476821	1512
					AY476822	1512
				Urospora penicilliformis		1512		LIT: Mol. Biol. Evol. 10(6):1317-1326 (1993).
				Urospora sp. AB58	AY476812	1512
				Urospora sp. U122	AY476820	943
				Urospora sp. U122	AY476820	1512
				Urospora sp. UP52	AY476813	1512
				Urospora wormskioldii	AY476819	943
					AY476819	1512
					AY476817	943
					AY476817	1512
					AY476814	943
					AY476815	1512
					AY476818	1512
					AY476816	1512
Caulerpa	C	16S	IA3	Caulerpa sertularioides	AY389514	508
			IA3	Caulerpa sertularioides	AY389514	793
			I	Caulerpa sertularioides	AY389514	1078
Gloeotilopsis	N	16S	IC1	Gloeotilopsis paucicellularis	Z47997	943		synonym Pleurastrum paucicellulare
						1046		synonym Pleurastrum paucicellulare
						1512		synonym Pleurastrum paucicellulare
				Gloeotilopsis planctonica	Z28970	943	a.I1
Protoderma	N	16S	IC1	Protoderma sarcinoidea	Z47998	943	a.I1
Protoderma	N	16S	IC1	Protoderma sarcinoidea	Z47998	1512
Trichosarcina	C	23S	IB4	Trichosarcina mucosa	AY008341	2500
	C	23S	IA3	Trichosarcina mucosa	AY008341	2593
	N	16S	IC1	Trichosarcina polymorpha	AM087962	1046
Pseudendoclonium	C	23S	IA3	Pseudendoclonium akinetum	AY835431	2593		replaces L44125
	C	23S	IA3	Pseudendoclonium akinetum	AY835431	2593		replaces L44125
	M	23S	IB4	Pseudendoclonium akinetum	AY359242	2500
Streptophyta	Klebsormidium	N	16S	IE	Klebsormidium flaccidum	X75520	516
					Klebsormidium nitens	AF408242	516		misannotated
					Klebsormidium nitens	AJ250112	516
					Klebsormidium subtilissimum	AF408241	516		misannotated
	Mesostigma	M	23S	IB4	Mesostigma viride	AF353999	1931
	Mesostigma	M	23S	IA3	Mesostigma viride	AF353999	2593
	Chara	C	23S	IB4	Chara corallina	AF393579	2500
					Chara sp. CL-2002-1	AF393584	2500
					Chara sp. CL-2002-2	AF393586	2500
					Chara vulgaris	DQ229107	2500
					Chara vulgaris	DQ229107	2500
		M	16S	IA3	Chara sp. Qiu 96222	AF191800	793		incorrect annotation
			16S	IA3	Chara vulgaris	AY267353	793
			23S	IA3	Chara vulgaris	AY267353	779
				IA3	Chara vulgaris	AY267353	2533
				IB4	Chara vulgaris	AY267353	1923
							1931
							2262
							2500
				IB	Chara vulgaris	AY267353	1943
				IB	Chara vulgaris	AY267353	2571
				IB1	Chara vulgaris	AY267353	2584
	Nitella	C	23S	IB4	Nitella sp. CL-2002	AF393603	2500
	Chaetosphaeridium	M	23S	IB4	Chaetosphaeridium globosum	AF494279	1917
	Anthoceros	C	23S	IA3	Anthoceros formosae	AB086179	2593
					Anthoceros formosae	AB073981	2593
					Anthoceros punctatus	AF393576	2593
	Takakia	M	16S	IA3	Takakia lepidozioides	AF058672	793
	Sphagnum	M	16S	IA3	Sphagnum palustre	AF058671	793
	Polytrichum	M	16S	IA3	Polytrichum commune	AF244564	793
	Marchantia	M	16S	IIA	Marchantia polymorpha	M68929	911	a.I2
	Marchantia	M	23S	IIB	Marchantia polymorpha	M68929	787
	Isoetes	M	16S	IA3	Isoetes histrix	AF058669	793
	Closterium	N	16S	IC1	Closterium acerosum	AF352230	1506
					Closterium ehrenbergii	AY148839	1506
						AY148847	1506
						AY148846	1506
						AY148828	1506
						AY148830	1506
						AY148863	1506
						AY148829	1506
						AY148852	1506
						AY148837	1506
						AY148853	1506
						AY148854	1506
						AY148855	1506
						AY148856	1506
						AY148827	1506
						AY148857	1506
						AY148845	1506
						AY148850	1506
						AY148851	1506
						AF115437	1506
						AY148818	1506
						AY148819	1506
						AY148820	1506
						AY148821	1506
						AY148842	1506
						AY148831	1506
						AY148832	1506
						AY148833	1506
						AY148843	1506
						AY148858	1506
						AY148822	1506
AY148823						1506
AY148824						1506
AY148825						1506
AY148826						1506
AY148841						1506
AY148844						1506
AY148864						1506
AY148834						1506
AY148835						1506
AY148836						1506
AY148838						1506
AY148848						1506
AY148840						1506
AY148859						1506
AY148860						1506
AY148861						1506
AY148862						1506
AY148811						1506
AY148812						1506
AY148816						1506
AY148817						1506
AY148808						1506
AY148809						1506
AY148810						1506
AY148849						1506
AY148813						1506
AY148814						1506
AF352228						1506
AY148815						1506
Closterium gracile					AF352237	1506
Closterium incurvum					AF352231	1506
Closterium littorale					AF115438	1506		P3 dosn't match P3'
Closterium navicula					AF352232	1506
Closterium pleurodermatum	AF352238	1506
Closterium selenastrum	AF352242	1506
Closterium tumidum	AF352234	1506
Closterium venus	AF352236	1506
Closterium wallichii	AF352243	1506
Closterium calosporum	N	16S	IC1	Closterium calosporum var. calosporum	AF352225	1506
				Closterium calosporum var. galiciense	AF352239	1506
				Closterium calosporum var. himalayense	AF352229	1506
Closterium moniliferum	N	16S	IC1	Closterium moniliferum var. moniliferum	AY148875	1506
					AY148876	1506
					AY148873	1506
					AF352222	1506
					AY148874	1506
					AF352233	1506
					AF352223	1506
				Closterium moniliferum var. submoniliferum	AY148867	1506
					AY148871	1506
					AY148868	1506
					AY148865	1506
					AF352221	1506
					AY148872	1506
					AY148870	1506
					AY148869	1506
					AY148866	1506
Closterium peracerosum-strigosum-littorale complex	N	16S	IC1	Closterium sp. NIES-52	AF352226	1506
Closterium pusillum	N	16S	IC1	Closterium pusillum var. maius	AF352235	1506
Closterium spinosporum	N	16S	IC1	Closterium spinosporum var. crassum	AF352241	1506
				Closterium spinosporum var. malaysiense	AF352227	1506
				Closterium spinosporum var. ryukyuense	AF352240	1506
				Closterium spinosporum var. spinosporum	AF352224	1506
Cosmarium	N	16S	IC1	Cosmarium botrytis	X77453	1506	a.I1
Cosmocladium	N	16S	IC1	Cosmocladium saxonicum	X79497	1506	a.I1
Sphaerozosma	N	16S	IC1	Sphaerozosma granulatum	X79496	1506	a.I1
Staurastrum	N	16S	IC1	Staurastrum punctulatum	AF115442	1506		P5b cannot be aligned well
				Staurastrum sp. M752	X74752	1506	a.I1
				Staurastrum sp. M753	X77452	1506	a.I1
Genicularia	N	16S	IC1	Genicularia spirotaenia	X74753	1506	a.I1
Gonatozygon	N	16S	IC1	Gonatozygon aculeatum	X91346	1506
Penium	N	16S	IC1	Penium margaritaceum	AF115440	1506
Cylindrocystis	N	16S	IC1	Cylindrocystis brebissonii	AF115439	1506
Mesotaenium	N	16S	IC1	Mesotaenium caldariorum	X75763	1506	a.I1
Mougeotia	N	16S	IC1	Mougeotia scalaris	X70705	1506	a.I1
Sirogonium	N	16S	IC1	Sirogonium sticticum	AF115441	1506
Zygnema	N	16S	IC1	Zygnema circumcarinatum	X79495	1506	a.I1	synonym Zygnemopsis circumcarinata

Comparative RNA Web Site and Project The Gutell Lab

Table 4B: Intron Type Data [Expanded View]