query: SELECT phylo,cell_loc,from_gene,rna_class,accession,structure,tax_id,organism,comment,site_pos,seq_size,seq_nbr,gr_id FROM subint WHERE phylo LIKE '%stramenopiles%' AND (from_gene = '16S' OR from_gene = '23S') AND available = 'Y' AND ready = 'Y' AND ( percentage > 89 OR percentage = -1 OR seq_size = -1 ) ORDER BY phylo,cell_loc,from_gene,site_pos,rna_class,seq_nbr,organism

Table 4B View:    

Structure File Format:     

Phylogeny Genus L EX RC Org Acc IP Struct. Comment
Eukaryota stramenopiles Bacillariophyta Amphiprora N 16S U Amphiprora paludosa AY485468
939   spliceosomal
Amphora N 16S U Amphora coffeaeformis AY485498
510   spliceosomal
939   spliceosomal
Leptocylindrus N 16S IC1 Leptocylindrus danicus AY485501
943    
Cymatosira N 16S U Cymatosira belgica X85387
742   spliceosomal
939   spliceosomal
1197   spliceosomal
Extubocellulus N 16S U Extubocellulus spinifer AY485504
742   spliceosomal
939   spliceosomal
1197   spliceosomal
Skeletonema N 23S IE Skeletonema pseudocostatum Y11512
1926    
Nanofrustulum N 16S U Nanofrustulum shiloi AY485505
510   spliceosomal
unclassified diatoms N 16S U Heterostegina depressa diatom endosymbiont AM233869
401   spliceosomal
894   spliceosomal
AM233868
401   spliceosomal
894   spliceosomal
AM233870
651   spliceosomal; in variable region ca. E. coli position 651
742   spliceosomal
813   spliceosomal
894   spliceosomal
939   spliceosomal
AM233871
813   spliceosomal
894   spliceosomal
PX clade Pylaiella M 23S IIB Pylaiella littoralis Z48620
575 a.I2  
1787 a.I2  
2451 a.I2  
2509 a.I2  
AJ277126
575    
1787    
2451    
2509    
Pelagophyceae Aureoumbra N 16S IC1 Aureoumbra lagunensis U40258
516 b.I1 annotated as insertion
environmental samples environmental samples N 16S U uncultured stramenopile AF372748
357   spliceosomal
1214   spliceosomal
AF372749
357   spliceosomal
1214   spliceosomal
AY179991
939   spliceosomal
AY179992
939   spliceosomal
1510   spliceosomal
AY179998
1050   spliceosomal
AY179993
1197   spliceosomal
AY180009
1408   spliceosomal