query: SELECT phylo,cell_loc,from_gene,rna_class,accession,structure,tax_id,organism,comment,site_pos,seq_size,seq_nbr,gr_id FROM subint WHERE phylo LIKE '%Bangia%' AND cell_loc LIKE '%Nucleus%' AND from_gene LIKE '%16S%' AND rna_class LIKE '%IC1%' AND available = 'Y' AND ready = 'Y' AND ( percentage > 89 OR percentage = -1 OR seq_size = -1 ) ORDER BY phylo,cell_loc,from_gene,site_pos,rna_class,seq_nbr,organism
Phylogeny | Genus | L | EX | RC | Org | Acc | IP | Struct. | Comment | ||
---|---|---|---|---|---|---|---|---|---|---|---|
Eukaryota | Rhodophyta | Bangiophyceae | Bangia | N | 16S | IC1 | Bangia atropurpurea | AB053491 |
516 | ||
AF172565 |
516 | England River Thames/BI12; exon sequence from AF043365 | |||||||||
AF172563 |
516 | Ireland/IR; exon sequence from AF043365 | |||||||||
AF172562 |
516 | Netherlands/NL: Ysselmeer; exon sequence from AF169341 | |||||||||
AF172566 |
516 | Great Lakes/GL; exon sequence from AF043365 | |||||||||
AF172564 |
516 | Italy/IT; exon sequence from AF043365 | |||||||||
D88387 |
516 | b.I1 | |||||||||
1506 | |||||||||||
L36066 |
1506 | ||||||||||
Bangia fuscopurpurea | AF172569 |
516 | Ireland/IR; exon sequence from AF175534 | ||||||||
AF172593 |
1506 | Ireland/IR; exon sequence from AF175534 | |||||||||
AF172568 |
516 | California/CA; exon sequence from AF043356 | |||||||||
AF172590 |
1506 | California/CA; exon sequence from AF043356 | |||||||||
AF172567 |
516 | Victoria/BC2; exon sequence from AF043359 | |||||||||
AF172591 |
1506 | Victoria/BC2; exon sequence from AF043359 | |||||||||
AF172572 |
516 | b.I1 | Oregon/OR; exon sequence from AF043358 | ||||||||
AF172589 |
1506 | Oregon/OR; exon sequence from AF043358 | |||||||||
AF342745 |
516 | b.I1 | |||||||||
1506 | |||||||||||
AF172560 |
516 | Germany: Helgoland/HL; exon sequence from AF175532 | |||||||||
AF172585 |
1506 | Germany: Helgoland/HL; exon sequence from AF175532 | |||||||||
AF172561 |
516 | Massachusetts/MA; exon sequence from AF043362 | |||||||||
AF172571 |
516 | Nova Scotia/NS; exon sequence from AF169337 | |||||||||
AF172594 |
1506 | Nova Scotia/NS; exon sequence from AF169337 | |||||||||
AB053489 |
516 | ||||||||||
AB053488 |
516 | ||||||||||
AF172570 |
516 | Newfoundland/NF; exon sequence from AF043357 | |||||||||
AF172592 |
1506 | Newfoundland/NF; exon sequence from AF043357 | |||||||||
AF172558 |
516 | Greece/GR; exon sequence from AF175533 | |||||||||
AF172587 |
1506 | Greece/GR; exon sequence from AF175533 | |||||||||
AF172559 |
516 | North Carolina/NC; exon sequence from AF043363 | |||||||||
AF172586 |
1506 | North Carolina/NC; exon sequence from AF043363 | |||||||||
AF172555 |
516 | New Jersey/NJ; exon sequence from AF169335 | |||||||||
AF172583 |
1506 | New Jersey/NJ; exon sequence from AF169335 | |||||||||
AF172556 |
516 | France: Nice; exon sequence from AF175535 | |||||||||
AF172584 |
1506 | France: Nice; exon sequence from AF175535 | |||||||||
AF172557 |
516 | b.I1 | Australia/AU; exon sequence from AF175531 | ||||||||
AF172582 |
1506 | Mexico/MEX; exon sequence from AF169334 | |||||||||
Bangia sp. strain BDS725 | AY184337 |
516 | |||||||||
Bangia sp. strain BGA458 | AY184341 |
516 | |||||||||
Bangia sp. strain BNS727 | AY184345 |
516 | |||||||||
Bangia sp. strain BWP662 | AY184348 |
516 | |||||||||
Bangia sp. | AF172578 |
516 | b.I1 | Virgin Islands/VIS7; exon sequence from AF043364 | |||||||
Porphyra | N | 16S | IC1 | Porphyra capensis | AY766361 |
516 | |||||
1506 | |||||||||||
Porphyra cinnamomea | AF136418 AF136419 |
516 | |||||||||
AF136419 |
1506 | ||||||||||
Porphyra dentata | AB013183 |
516 | |||||||||
1506 | |||||||||||
Porphyra drewiana | AY766362 |
1506 | |||||||||
Porphyra fucicola | AF172595 |
1506 | |||||||||
Porphyra haitanensis | AB015795 |
516 | |||||||||
AB013181 |
1506 | ||||||||||
Porphyra kanakaensis | AF172580 |
516 | exon sequence from AF175556 | ||||||||
Porphyra katadae | AB013184 |
516 | |||||||||
1506 | |||||||||||
Porphyra leucosticta | AF172576 |
516 | exon sequence from AF175557 | ||||||||
AF172598 |
1506 | exon sequence from AF175557 | |||||||||
AF342746 |
516 | b.I1 | |||||||||
Porphyra lucasii | AY139685 |
516 | synonym: Porphyra sp. WELT A23051 | ||||||||
Porphyra nereocystis | AF172577 |
516 | exon sequence from AF175542 | ||||||||
Porphyra onoi | AB015794 |
516 | |||||||||
Porphyra pseudolanceolata | AF172599 |
1506 | exon sequence from AF175543 | ||||||||
Porphyra pseudolinearis | AB013185 |
516 | |||||||||
1506 | |||||||||||
Porphyra purpurea | AF172575 |
516 | exon sequence from AF175551 | ||||||||
AF172588 |
1506 | exon sequence from AF175551 | |||||||||
Porphyra rakiura | AF136425 |
516 | |||||||||
1506 | |||||||||||
AY139682 |
516 | ||||||||||
AY139684 |
516 | ||||||||||
Porphyra rediviva | AF172600 |
1506 | exon sequence from AF175544 | ||||||||
Porphyra sp. | AB013182 |
516 | |||||||||
1506 | |||||||||||
AF136420 |
516 | ||||||||||
1506 | |||||||||||
AF136422 |
1506 | ||||||||||
AB017077 |
1506 | ||||||||||
Porphyra spiralis | L26177 |
1506 | a.I1 | ||||||||
L26176 |
1506 | a.I1 | |||||||||
L26175 |
1506 | a.I1 | |||||||||
Porphyra suborbiculata | AF378658 |
516 | synonym Porphyra lilliputiana | ||||||||
1506 | synonym Porphyra lilliputiana | ||||||||||
AF378650 |
516 | synonym Porphyra lilliputiana | |||||||||
1506 | synonym Porphyra lilliputiana | ||||||||||
AF378657 |
516 | ||||||||||
AF378656 |
516 | ||||||||||
AF378655 |
516 | ||||||||||
AF378665 |
516 | synonym Porphyra lilliputiana | |||||||||
1506 | synonym Porphyra lilliputiana | ||||||||||
AF378664 |
516 | synonym Porphyra lilliputiana | |||||||||
1506 | synonym Porphyra lilliputiana | ||||||||||
AF378663 |
516 | synonym Porphyra lilliputiana | |||||||||
1506 | synonym Porphyra lilliputiana | ||||||||||
AF378662 |
516 | synonym Porphyra lilliputiana | |||||||||
1506 | synonym Porphyra lilliputiana | ||||||||||
AF136424 |
516 | synonym Porphyra lilliputiana | |||||||||
1506 | synonym Porphyra lilliputiana | ||||||||||
AF378661 |
516 | synonym Porphyra lilliputiana | |||||||||
1506 | synonym Porphyra lilliputiana | ||||||||||
AF378660 |
516 | synonym Porphyra lilliputiana | |||||||||
1506 | synonym Porphyra lilliputiana | ||||||||||
AF378659 |
516 | synonym Porphyra lilliputiana | |||||||||
1506 | synonym Porphyra lilliputiana | ||||||||||
AF378649 |
516 | synonym Porphyra lilliputiana | |||||||||
1506 | synonym Porphyra lilliputiana | ||||||||||
AF378654 |
516 | synonym Porphyra carolinensis | |||||||||
1506 | synonym Porphyra carolinensis | ||||||||||
AF378653 |
516 | synonym Porphyra carolinensis | |||||||||
1506 | synonym Porphyra carolinensis | ||||||||||
AF133792 |
516 | synonym Porphyra carolinensis | |||||||||
AB015796 |
516 | ||||||||||
AF378651 |
516 | synonym Porphyra lilliputiana | |||||||||
1506 | synonym Porphyra lilliputiana | ||||||||||
AB013180 |
516 | ||||||||||
AF378652 |
516 | ||||||||||
1506 | |||||||||||
Porphyra tenera | AB029883 |
516 | P2 P2.1 missing some part | ||||||||
1506 | |||||||||||
AB000964 |
516 | ||||||||||
AB029880 |
516 | ||||||||||
1506 | |||||||||||
AB101442 |
516 | ||||||||||
1506 | |||||||||||
D86237 |
516 | intron not annotated | |||||||||
D86236 |
516 | intron not annotated | |||||||||
AB029881 |
516 | ||||||||||
1506 | |||||||||||
AB013176 |
516 | ||||||||||
1506 | |||||||||||
AB013175 |
516 | ||||||||||
1506 | |||||||||||
AB029879 |
516 | ||||||||||
1506 | |||||||||||
AB100958 |
516 | ||||||||||
1506 | |||||||||||
AB100959 |
516 | ||||||||||
1506 | |||||||||||
AB029882 |
516 | P2 P2.1 missing some part | |||||||||
1506 | |||||||||||
AB029884 |
516 | P2 P2.1 missing some part | |||||||||
1506 | |||||||||||
Porphyra tenuipedalis | AB015797 |
516 | |||||||||
Porphyra torta | AF172579 |
516 | exon sequence from AF175552 | ||||||||
Porphyra umbilicalis | AF172573 |
516 | New Jersey/NJ; exon from AF175553 | ||||||||
AY347902 |
1506 | ||||||||||
AY347908 |
1506 | ||||||||||
AY347903 |
1506 | ||||||||||
AY347904 |
1506 | ||||||||||
AY347905 |
1506 | ||||||||||
AY347909 |
1506 | ||||||||||
AY347906 |
1506 | ||||||||||
AY347910 |
1506 | ||||||||||
AF172602 |
1506 | Germany: Hallig Grode; exon sequence from AF175549 | |||||||||
Porphyra virididentata | AF136421 |
1506 | |||||||||
Porphyra yezoensis | AY131005 |
516 | |||||||||
D79976 |
516 | a.I1 | |||||||||
AB013177 |
516 | ||||||||||
AB013178 |
516 | ||||||||||
1506 | |||||||||||
AB017078 |
1506 | ||||||||||
AB017083 |
1506 | ||||||||||
AB017075 |
1506 | ||||||||||
AB017081 |
1506 | ||||||||||
AB017076 |
1506 | ||||||||||
unclassified Porphyra | N | 16S | IC1 | Porphyra sp. Baleia | AY766358 |
516 | |||||
1506 | |||||||||||
Porphyra sp. Brest | AF172601 |
1506 | exon sequence from AF175548 | ||||||||
Porphyra sp. Marseille | AF172597 |
1506 | exon sequence from AF175546 | ||||||||
Porphyra sp. Wales SW1 | AF172574 |
516 | exon from AF175554 | ||||||||
Porphyra sp. strain GRB145 | AY184349 |
516 | |||||||||
Porphyra sp. strain GRB488 | AY184350 |
516 |