query: SELECT phylo,cell_loc,from_gene,rna_class,accession,structure,tax_id,organism,comment,site_pos,seq_size,seq_nbr,gr_id FROM subint WHERE phylo LIKE '%Parmelia%' AND cell_loc LIKE '%Nucleus%' AND from_gene LIKE '%16S%' AND rna_class LIKE '%I%' AND available = 'Y' AND ready = 'Y' AND ( percentage > 89 OR percentage = -1 OR seq_size = -1 ) ORDER BY phylo,cell_loc,from_gene,site_pos,rna_class,seq_nbr,organism

Table 4B View:    

Structure File Format:     

Phylogeny Genus L EX RC Org Acc IP Struct. Comment
Eukaryota Fungi/Metazoa group Fungi Ahtiana N 16S I Ahtiana sphaerosporella AF141859
 1516    
Arctocetraria N 16S I Arctocetraria nigricascens AF254628
 1516    
Asahinea N 16S I Asahinea chrysantha AF451766
 1516    
AF451767
 1516    
Bryoria N 16S I Bryoria fuscescens AF451736
 1516    
Cavernularia N 16S I Cavernularia lophyrea AF141367
 1516   possibly IP 1521
AF115757
 1516   possibly IP 1521
Cetraria N 16S I Cetraria arenaria AF115758
 1516   possibly IP 1521
Cetraria islandica AF139035
 0   IP 1516? (possibly 1521)
  940   LIT: Curr. Genet. 35(5):536-541 (1999).
AF072225
 1516   possibly IP 1521
Cetraria nigricans AF254629
 1516    
AF254630
 1516    
Cetraria odontella AF228285
 1516    
AF228303
 1516    
AF228304
 1516    
Cetraria ericetorum N 16S I Cetraria ericetorum subsp. ericetorum AF139033
 0   IP 1516? (possibly 1521)
AF228290
 1516   possibly IP 1521
Cetraria ericetorum subsp. reticulata AF139034
 0   IP 1516? (possibly 1521)
Cetraria islandica N 16S I Cetraria islandica subsp. antarctica AF254627
 1516    
AF228293
 1516    
Cetraria islandica subsp. crispiformis AF228294
 1516    
AF228295
 1516    
Cetraria islandica subsp. islandica AF228297
 1516    
AF228299
 1516    
AF228296
 1516    
AF228298
 1516    
Dactylina N 16S I Dactylina arctica AF115760
 1516   possibly IP 1521
Flavoparmelia N 16S I Flavoparmelia caperata AY584663
 788    
943    
Hypogymnia N 16S I Hypogymnia physodes   940   LIT: Curr. Genet. 35(5):536-541 (1999).
AF115761
 1516   possibly IP 1521
AF141368
 1516   possibly IP 1521
Letharia N 16S I Letharia columbiana AF221063
 287    
Melanelia N 16S I Melanelia hepatizon AF141369
 1516   possibly IP 1521
Nephromopsis N 16S I Nephromopsis ahtii AF404123
 1516   5' exon not present; genbank synonym: Tuckneraria ahtii
Nephromopsis komarovii AF451779
 1516    
Nephromopsis laureri AF451786
 1516   genbank synonym: Tuckneraria laureri
Nephromopsis stracheyi AF451785
 1516    
Parmelia N 16S I Parmelia ernstiae AF412309
 1516    
AF412310
 1516    
Parmelia saxatilis   940   LIT: Curr. Genet. 35(5):536-541 (1999).
AF451770
 1516    
AF141370
 1516   possibly IP 1521
AF410837
 1516    
AF451771
 1516    
AF410836
 1516    
AF410835
 1516    
AF451772
 1516    
Parmotrema N 16S I Parmotrema tinctorum AY584659
 497   intron in variable region ca. E. coli position 497
516    
943    
1046    
Pseudephebe N 16S I Pseudephebe pubescens AF451738
 1516    
Usnea N 16S I Usnea filipendula   940   LIT: Curr. Genet. 35(5):536-541 (1999).
Usnea hirta   940   LIT: Curr. Genet. 35(5):536-541 (1999).
Usnea rigida   940   LIT: Curr. Genet. 35(5):536-541 (1999).
Usnea subfloridana   940   LIT: Curr. Genet. 35(5):536-541 (1999).
Vulpicida N 16S I Vulpicida juniperina   940   LIT: Curr. Genet. 35(5):536-541 (1999).
Vulpicida pinastri AF072239
 1516   possibly IP 1521
AF139031
 1516   IP 1516? (possibly 1521)
Xanthoparmelia N 16S I Xanthoparmelia semiviridis AF451746
 1516   synonym Chondropsis semiviridis