Last modified on 10 August 2011.

NOTE: This section is under development.

Structure IDs and Associated Motif Information

Listed in alphabetical order by abbreviation.
Abbreviation Organism/Molecule [PDB ID] Motifs
Am AP CL EELL EL ELL GR HT KT LT TGA TL UG UT
D23S Deinococcus radiodurans 23S rRNA [2ZJR]     CL EELL EL ELL   HT KT LT TGA TL UG UT
D5S Deinococcus radiodurans 5S rRNA [2ZJR]       EELL EL ELL     KT LT   TL   UT
E16S Escherichia coli 16S rRNA [2QAL]       EELL EL ELL   HT KT LT TGA TL UG UT
E23S Escherichia coli 23S rRNA [2QAM]   AP CL EELL EL ELL   HT KT LT TGA TL UG UT
E5S Escherichia coli 5S rRNA [2QAM]       EELL EL ELL     KT LT   TL   UT
G1A Azoarcus sp. group I RNA [1U6B]   AP         GR         TL   UT
G1T Tetrahymena thermophila group I RNA [1GID]   AP         GR         TL   UT
G2O Oceanobacillus iheyensis group II RNA [3G78]   AP   EELL EL ELL GR     LT   TL UG UT
H23S Haloarcula marismortui 23S rRNA [1JJ2] Am   CL EELL EL ELL   HT KT LT TGA TL UG UT
H5S Haloarcula marismortui 5S rRNA [1JJ2] Am     EELL EL ELL     KT LT   TL   UT
RNaseP Bacillus subtilis RNase P RNA [1NBS] or Bacillus stearothermophilus RNase P RNA [2A64]   AP   EELL EL ELL GR     LT   TL UG UT
snoRNA Homo sapiens U4 snRNA [2OZB]                 KT          
T16S Thermus thermophilus 16S rRNA [1FJF] Am     EELL EL ELL   HT KT LT TGA TL UG UT
T23S Thermus thermophilus 23S rRNA [3I8I]     CL EELL EL ELL   HT KT LT TGA TL UG UT
T5S Thermus thermophilus 5S rRNA [3I8I]       EELL EL ELL     KT LT   TL   UT
TLRS Thermotoga maritima Lysine Riboswitch RNA [3D0U]       EELL EL                  
tRNA Saccharomyces cerevisiae Phe-tRNA [6TNA]                   LT       UT

Motif IDs and Associated Structure Information

Listed in alphabetical order by abbreviation.
Abbreviation Motif 3D Structures
D23S D5S E16S E23S E5S G1A G1T G2O H23S H5S RNaseP snoRNA T16S T23S T5S TLRS tRNA
Am A-Minor                 H23S H5S     T16S        
AP A Platforms       E23S   G1A G1T G2O     RNaseP            
CL C Loops D23S     E23S         H23S         T23S      
EELL E and E-like Loops D23S D5S E16S E23S E5S     G2O H23S H5S RNaseP   T16S T23S T5S TLRS  
EL E Loop D23S D5S E16S E23S E5S     G2O H23S H5S RNaseP   T16S T23S T5S TLRS  
ELL E-like Loop D23S D5S E16S E23S E5S     G2O H23S H5S RNaseP   T16S T23S T5S    
GR GAAA Receptors           G1A G1T G2O     RNaseP            
HT H-Turns D23S   E16S E23S         H23S       T16S T23S      
KT K-Turns D23S D5S E16S E23S E5S       H23S H5S   snoRNA T16S T23S T5S    
LT Lonepair Triloops D23S D5S E16S E23S E5S     G2O H23S H5S RNaseP   T16S T23S T5S   tRNA
TGA Tandem G:A D23S   E16S E23S         H23S       T16S T23S      
TL Tetraloops D23S D5S E16S E23S E5S G1A G1T G2O H23S H5S RNaseP   T16S T23S T5S    
UG UAA/GAN D23S   E16S E23S       G2O H23S   RNaseP   T16S T23S      
UT U-Turn D23S D5S E16S E23S E5S G1A G1T G2O H23S H5S RNaseP   T16S T23S T5S   tRNA