Identification of Basepairs and Their Conformations in Crystal Structures Containing RNA

Note: The number of identified basepairs are for all chains in PDB structures
PDB #nt #bp(LG) #bp(LW) Res Release RNA Source Structure Description Reference
1FFK 2828 1777 1335 2.4 2000-08-14 rRNA Haloarcula marismortui H50S native original lacking L11-binding domain PubMed | Ban, N et al, Science 289, 905-920(2000)
1JJ2 2876 1884 1370 2.4 2001-08-01 rRNA Haloarcula marismortui H50S native refined containing L11-binding domain PubMed | Klein, DJ et al, EMBO J 20, 4214-4221(2001)
1M90 2879 1865 1372 2.8 2002-09-06 rRNA Haloarcula marismortui H50S + Sparsomycin PubMed | Hansen, JL et al, PNAS 99, 11670-11675(2002)
1K8A 2876 1835 1352 3 2002-07-19 rRNA Haloarcula marismortui H50S + Carbamycin A PubMed | Hansen, JL et al, Mol Cell 10, 117-128(2002)
1K9M 2876 1849 1360 3 2002-07-19 rRNA Haloarcula marismortui H50S + Tylosin PubMed | Hansen, JL et al, Mol Cell 10, 117-128(2002)
1KD1 2876 1845 1350 3 2002-07-19 rRNA Haloarcula marismortui H50S + Spiramycin PubMed | Hansen, JL et al, Mol Cell 10, 117-128(2002)
1M1K 2876 1847 1354 3 2002-07-19 rRNA Haloarcula marismortui H50S + Azithromycin PubMed | Hansen, JL et al, Mol Cell 10, 117-128(2002)
1KQS 2881 1855 1366 3.1 2002-02-22 rRNA Haloarcula marismortui H50S + PE-tRNA analogs PubMed | Schmeing, TM et al, NSB 9, 225-230(2002)
1K73 2876 1866 1371 3.01 2003-07-22 rRNA Haloarcula marismortui H50S + Anisomycin PubMed | Hansen, J et al, JMB 330, 1061-1075(2003)
1KC8 2876 1861 1361 3.01 2003-07-22 rRNA Haloarcula marismortui H50S + Blasticidin PubMed | Hansen, J et al, JMB 330, 1061-1075(2003)
1N8R 2876 1851 1356 3 2003-07-22 rRNA Haloarcula marismortui H50S + Virginiamycin M PubMed | Hansen, J et al, JMB 330, 1061-1075(2003)
1NJI 2876 1863 1366 3 2003-07-22 rRNA Haloarcula marismortui H50S + Chloramphenicol PubMed | Hansen, J et al, JMB 330, 1061-1075(2003)
1Q7Y 2879 1821 1352 3.2 2003-10-07 rRNA Haloarcula marismortui H50S + CCDAP-Puromycin PubMed | Hansen, JL et al, PNAS 99, 11670-11675(2002)
1Q81 2878 1813 1354 2.95 2003-10-07 rRNA Haloarcula marismortui H50S + Puromycin PubMed | Hansen, JL et al, PNAS 99, 11670-11675(2002)
1Q82 2878 1850 1357 2.98 2003-10-07 rRNA Haloarcula marismortui H50S + CC-Puromycin PubMed | Hansen, JL et al, PNAS 99, 11670-11675(2002)
1Q86 2882 1845 1363 3 2003-10-07 rRNA Haloarcula marismortui H50S + CCA-Phe-cap-biotin PubMed | Hansen, JL et al, PNAS 99, 11670-11675(2002)
1QVF 2888 1871 1371 3.1 2003-11-11 rRNA Haloarcula marismortui H50S + E-tRNA ASLM PubMed | Schmeing, TM et al, RNA 9, 1345-1352(2003)
1QVG 2885 1849 1357 2.9 2003-11-11 rRNA Haloarcula marismortui H50S + CCA PubMed | Schmeing, TM et al, RNA 9, 1345-1352(2003)
1S72 2876 1891 1382 2.4 2004-06-15 rRNA Haloarcula marismortui H50S native refined further PubMed | Klein, DJ et al, JMB 340, 141-177(2004)
1W2B 2876 1746 1314 3.5 2004-09-02 rRNA Haloarcula marismortui H50S + TrgF PubMed | Ferbitz, L et al, Nature 431, 590-596(2004)
1YHQ 2876 1867 1364 2.4 2005-04-26 rRNA Haloarcula marismortui H50S with G2099A + Azithromycin PubMed | Tu, D et al, Cell 121, 257-270(2005)
1YI2 2876 1860 1362 2.65 2005-04-26 rRNA Haloarcula marismortui H50S with G2099A + Erythromycin PubMed | Tu, D et al, Cell 121, 257-270(2005)
1YIJ 2876 1860 1357 2.6 2005-04-26 rRNA Haloarcula marismortui H50S with G2099A + Telithromycin PubMed | Tu, D et al, Cell 121, 257-270(2005)
1YIT 2876 1838 1355 2.8 2005-04-26 rRNA Haloarcula marismortui H50S + Virginiamycin M PubMed | Tu, D et al, Cell 121, 257-270(2005)
1YJ9 2877 1818 1347 2.8 2005-04-26 rRNA Haloarcula marismortui H50S with L22 with 3 residues deleted PubMed | Tu, D et al, Cell 121, 257-270(2005)
1YJN 2876 1824 1352 3 2005-04-26 rRNA Haloarcula marismortui H50S with G2099A + Clindamycin PubMed | Tu, D et al, Cell 121, 257-270(2005)
1YJW 2876 1839 1354 2.9 2005-04-26 rRNA Haloarcula marismortui H50S with G2099A + Quinupristin PubMed | Tu, D et al, Cell 121, 257-270(2005)
1VQ4 2882 1845 1372 2.7 2005-11-29 rRNA Haloarcula marismortui H50S + DAA PubMed | Schmeing, TM et al, Mol Cell 20, 437-448(2005)
1VQ5 2882 1849 1360 2.6 2005-11-29 rRNA Haloarcula marismortui H50S + RAA PubMed | Schmeing, TM et al, Mol Cell 20, 437-448(2005)
1VQ6 2881 1847 1373 2.7 2005-11-29 rRNA Haloarcula marismortui H50S + C-HPMN + CCA-Phe-cap-biotin PubMed | Schmeing, TM et al, Mol Cell 20, 437-448(2005)
1VQ7 2882 1856 1364 2.5 2005-11-29 rRNA Haloarcula marismortui H50S + DCA PubMed | Schmeing, TM et al, Mol Cell 20, 437-448(2005)
1VQ8 2879 1843 1370 2.2 2005-11-29 rRNA Haloarcula marismortui H50S + CCDA-Phe-cap-biotin + Sparcinomycin PubMed | Schmeing, TM et al, Mol Cell 20, 437-448(2005)
1VQ9 2879 1824 1368 2.4 2005-11-29 rRNA Haloarcula marismortui H50S + CCA-Phe-cap-biotin + Sparcinomycin PubMed | Schmeing, TM et al, Mol Cell 20, 437-448(2005)
1VQK 2879 1840 1369 2.3 2005-11-29 rRNA Haloarcula marismortui H50S + CCDA-Phe-cap-biotin PubMed | Schmeing, TM et al, Mol Cell 20, 437-448(2005)
1VQL 2882 1850 1366 2.3 2005-11-29 rRNA Haloarcula marismortui H50S + DCSN PubMed | Schmeing, TM et al, Mol Cell 20, 437-448(2005)
1VQM 2882 1845 1366 2.3 2005-11-29 rRNA Haloarcula marismortui H50S + DAN PubMed | Schmeing, TM et al, Mol Cell 20, 437-448(2005)
1VQN 2882 1834 1363 2.4 2005-11-29 rRNA Haloarcula marismortui H50S + CC-HPMN + CCA-Phe-cap-biotin PubMed | Schmeing, TM et al, Mol Cell 20, 437-448(2005)
1VQO 2879 1835 1370 2.2 2005-11-29 rRNA Haloarcula marismortui H50S + CCPMN PubMed | Schmeing, TM et al, Mol Cell 20, 437-448(2005)
1VQP 2882 1844 1370 2.25 2005-11-29 rRNA Haloarcula marismortui H50S + RAP PubMed | Schmeing, TM et al, Mol Cell 20, 437-448(2005)
2OTJ 2876 1835 1349 2.9 2007-04-03 rRNA Haloarcula marismortui H50S + Tedanolid PubMed | Schroeder, SJ et al, JMB 1471-1479(2007)
2OTL 2876 1832 1351 2.7 2007-04-03 rRNA Haloarcula marismortui H50S + Girodazole PubMed | Schroeder, SJ et al, JMB 1471-1479(2007)
3CMA 2882 1826 1357 2.8 2008-09-23 rRNA Haloarcula marismortui H50S + tRNA-CCA + CCA-Phe-cap-biotin PubMed | Simonovic, M et al, RNA 14, 2372-2378(2008)
3CME 2881 1782 1337 2.95 2008-09-23 rRNA Haloarcula marismortui H50S + tRNA-CA + CCA-Phe-cap-biotin PubMed | Simonovic, M et al, RNA 14, 2372-2378(2008)
3CPW 2879 1839 1373 2.7 2008-07-22 rRNA Haloarcula marismortui H50S + CCA-Phe + Linezolid PubMed | Ippolito, JA et al, JMC 51, 3353-3356(2008)
3CC2 2876 1872 1370 2.4 2008-05-20 rRNA Haloarcula marismortui H50S PubMed | Blaha, G et al, JMB 379, 505-519(2008)
3CC4 2876 1832 1366 2.7 2008-05-20 rRNA Haloarcula marismortui H50S + Anisomycin PubMed | Blaha, G et al, JMB 379, 505-519(2008)
3CC7 2876 1829 1359 2.7 2008-05-20 rRNA Haloarcula marismortui H50S containing 23S rRNA with C2487U PubMed | Blaha, G et al, JMB 379, 505-519(2008)
3CCE 2876 1823 1353 2.75 2008-05-20 rRNA Haloarcula marismortui H50S containing 23S rRNA with U2535A PubMed | Blaha, G et al, JMB 379, 505-519(2008)
3CCJ 2876 1730 1299 2.7 2008-05-20 rRNA Haloarcula marismortui H50S containing 23S rRNA with C2534U PubMed | Blaha, G et al, JMB 379, 505-519(2008)
3CCL 2876 1816 1358 2.9 2008-05-20 rRNA Haloarcula marismortui H50S containing 23S rRNA with U2535C + Anisomycin (not visible) PubMed | Blaha, G et al, JMB 379, 505-519(2008)
3CCM 2876 1821 1364 2.55 2008-05-20 rRNA Haloarcula marismortui H50S containing 23S rRNA with G2611U PubMed | Blaha, G et al, JMB 379, 505-519(2008)
3CCQ 2876 1822 1359 2.9 2008-05-20 rRNA Haloarcula marismortui H50S containing 23S rRNA with A2488U PubMed | Blaha, G et al, JMB 379, 505-519(2008)
3CCR 2876 1788 1324 3 2008-05-20 rRNA Haloarcula marismortui H50S containing 23S rRNA with A2488C + Anisomycin (no visible) PubMed | Blaha, G et al, JMB 379, 505-519(2008)
3CCS 2876 1820 1338 2.95 2008-05-20 rRNA Haloarcula marismortui H50S containing 23S rRNA with G2482A PubMed | Blaha, G et al, JMB 379, 505-519(2008)
3CCU 2876 1840 1366 2.8 2008-05-20 rRNA Haloarcula marismortui H50S containing 23S rRNA with G2482C PubMed | Blaha, G et al, JMB 379, 505-519(2008)
3CCV 2876 1833 1359 2.9 2008-05-20 rRNA Haloarcula marismortui H50S containing 23S rRNA with G2616A PubMed | Blaha, G et al, JMB 379, 505-519(2008)
3CD6 2878 1829 1349 2.75 2008-05-20 rRNA Haloarcula marismortui H50S containing 23S rRNA with G2616A + CC-Puromycin PubMed | Blaha, G et al, JMB 379, 505-519(2008)
2QA4 2874 1741 1291 3 2008-04-01 rRNA Haloarcula marismortui H50S with more complete L7/L12 stalk PubMed | Kavran, JM et al, JMB 371, 1047-1059(2007)
2QEX 2876 1777 1341 2.9 2008-09-30 rRNA Haloarcula marismortui H50S + Negamycin PubMed | Schoeder, SJ et al, AAC 51, 4462-4465(2007)
3CXC 2879 1831 1363 3 2009-04-28 rRNA Haloarcula marismortui H50S + CCA + Biaryloxazolidones PubMed | Zhou, J et al, Bioorg Med Chem Lett 18, 6175-6178(2008)
3G4S 2876 1740 1272 3.2 2009-04-28 rRNA Haloarcula marismortui H50S + Tiamulin PubMed | Gurel, G et al, JMB 389, 146-156(2009)
3G6E 2876 1832 1365 2.7 2009-04-28 rRNA Haloarcula marismortui H50S + Homoharringtonine PubMed | Gurel, G et al, JMB 389, 146-156(2009)
3G71 2876 1815 1352 2.85 2009-04-28 rRNA Haloarcula marismortui H50S + Bruceantin PubMed | Gurel, G et al, JMB 389, 146-156(2009)
3I55 2882 1798 1343 3.11 2010-03-09 rRNA Haloarcula marismortui H50S + Mycalamide A PubMed | Gurel, G et al, AAC 53, 5010-5014(2009)
3I56 2876 1831 1342 2.9 2010-03-09 rRNA Haloarcula marismortui H50S + Mycalamide A PubMed | Gurel, G et al, AAC 53, 5010-5014(2009)
1FKA 1174 383 300 3.3 2000-09-04 rRNA Thermus thermophilus X07998 T30S native original PubMed | Schluenzen, F et al, Cell 102, 615-623(2000)
1FJF 1513 953 n/a 3.05 2000-09-25 rRNA Thermus thermophilus M26923 T30S native original PubMed | Wimberley, BT et al, Nature 407, 327-339(2000)
1FJG 1513 927 690 3 2000-09-25 rRNA Thermus thermophilus M26923 T30S + Antibiotics PubMed | Carter, AP et al, Nature 407, 340-348(2000)
1HR0 1513 917 678 3.2 2001-01-24 rRNA Thermus thermophilus M26923 T30S + IF1 PubMed | Carter, AP et al, Science 291, 498-501(2001)
1HNW 1513 913 670 3.4 2001-02-21 rRNA Thermus thermophilus M26923 T30S + Tetracycline PubMed | Brodersen, DE et al, Cell 103, 1143-1154(2000)
1HNX 1513 912 671 3.4 2001-02-21 rRNA Thermus thermophilus M26923 T30S + Pactamycin PubMed | Brodersen, DE et al, Cell 103, 1143-1154(2000)
1HNZ 1513 908 663 3.3 2001-02-21 rRNA Thermus thermophilus M26923 T30S + Hygromycin B PubMed | Brodersen, DE et al, Cell 103, 1143-1154(2000)
1I94 1514 811 616 3.2 2001-04-12 rRNA Thermus thermophilus M26923 T30S + Tetracycline + Edeine + IF3 PubMed | Pioletti, M et al, EMBO J 20, 1829-1839(2001)
1I95 1514 803 592 4.5 2001-04-12 rRNA Thermus thermophilus M26923 T30S + Edeine PubMed | Pioletti, M et al, EMBO J 20, 1829-1839(2001)
1I96 1514 838 629 4.2 2001-04-12 rRNA Thermus thermophilus M26923 T30S + IF3 PubMed | Pioletti, M et al, EMBO J 20, 1829-1839(2001)
1I97 1514 612 436 4.5 2001-04-12 rRNA Thermus thermophilus M26923 T30S + Tetracycline PubMed | Pioletti, M et al, EMBO J 20, 1829-1839(2001)
1IBK 1512 911 665 3.31 2001-05-04 rRNA Thermus thermophilus M26923 T30S + mRNA + Paromomycin PubMed | Ogle, JM et al, Science 292, 897-902(2001)
1IBL 1532 915 688 3.11 2001-05-04 rRNA Thermus thermophilus M26923 T30S + mRNA + ASLM + Paromomycin PubMed | Ogle, JM et al, Science 292, 897-902(2001)
1IBM 1528 907 667 3.31 2001-05-04 rRNA Thermus thermophilus M26923 T30S + mRNA + ASLM PubMed | Ogle, JM et al, Science 292, 897-902(2001)
1J5E 1513 964 689 3.05 2002-04-12 rRNA Thermus thermophilus M26923 T30S native refined PubMed | Wimberley, BT et al, Nature 407, 327-339(2000)
1N32 1532 916 687 3 2002-11-29 rRNA Thermus thermophilus M26923 T30S + tRNA ASL + mRNA PubMed | Ogle, JM et al, Cell 111, 721-732(2002)
1N33 1528 802 641 3.35 2002-11-29 rRNA Thermus thermophilus M26923 T30S + tRNA ASL + mRNA PubMed | Ogle, JM et al, Cell 111, 721-732(2002)
1N34 1517 672 520 3.8 2002-11-29 rRNA Thermus thermophilus M26923 T30S + mRNA PubMed | Ogle, JM et al, Cell 111, 721-732(2002)
1N36 1513 657 502 3.65 2002-11-29 rRNA Thermus thermophilus M26923 T30S native PubMed | Ogle, JM et al, Cell 111, 721-732(2002)
1XMO 1521 879 644 3.25 2004-12-14 rRNA Thermus thermophilus M26923 T30S + Lys-tRNA + AAG-mRNA PubMed | Murphy, FV et al, NSMB 11, 1186-1191(2004)
1XMQ 1522 895 662 3 2004-12-14 rRNA Thermus thermophilus M26923 T30S + Lys-tRNA + AAG-mRNA PubMed | Murphy, FV et al, NSMB 11, 1186-1191(2004)
1XNQ 1522 900 660 3.05 2004-12-14 rRNA Thermus thermophilus T30S with I:A Wb PubMed | Murphy, FV et al, NSMB 11, 1251-1252(2004)
1XNR 1522 889 662 3.1 2004-12-14 rRNA Thermus thermophilus T30S with I:C Wb PubMed | Murphy, FV et al, NSMB 11, 1251-1252(2004)
2F4V 1511 730 588 3.8 2006-07-04 rRNA Thermus thermophilus T30S + designer antibiotic 1 PubMed | Murray, JP et al, CB 13, 129-138(2006)
2HHH 1505 854 643 3.35 2006-09-26 rRNA Thermus thermophilus HB8 T30S + Kasugamycin PubMed | Schluenzene, F et al, NSMB 13, 871-878(2006)
2E5L 1527 861 659 3.3 2007-05-15 rRNA Thermus thermophilus T30S + mRNA PubMed | Kaminishi, T et al, Structure 15, 289-297(2007)
2UXB 1524 858 634 3.1 2007-07-31 rRNA Thermus thermophilus HB8 T30S + A-site mRNA GGGU + A-tRNA ASL + Paromomycin PubMed | Dunham, CM et al, RNA 13, 817-823(2007)
2UXC 1525 909 671 2.9 2007-05-08 rRNA Thermus thermophilus HB8 T30S + A-site mRNA UCGU + A-tRNA ASL + Paromomycin PubMed | Dunham, CM et al, RNA 13, 817-823(2007)
2UXD 1496 855 635 3.2 2007-10-02 rRNA Thermus thermophilus HB8 T30S + A-site mRNA CGGG + A-tRNA ASL + Paromomycin PubMed | Dunham, CM et al, RNA 13, 817-823(2007)
2UU9 1530 920 684 3.1 2007-10-16 rRNA Thermus thermophilus HB8 T30S + A-tRNA ASL + A-site mRNA GUG + Paromomycin PubMed | Weixlbaumer, A et al, NSMB 14, 498-502(2007)
2UUA 1530 926 691 2.9 2007-10-16 rRNA Thermus thermophilus HB8 T30S + A-tRNA ASL + A-site mRNA GUC + Paromomycin PubMed | Weixlbaumer, A et al, NSMB 14, 498-502(2007)
2UUB 1528 921 681 2.8 2007-10-16 rRNA Thermus thermophilus HB8 T30S + A-tRNA ASL + A-site mRNA GUU + Paromomycin PubMed | Weixlbaumer, A et al, NSMB 14, 498-502(2007)
2UUC 1529 924 684 3.1 2007-10-16 rRNA Thermus thermophilus HB8 T30S + A-tRNA ASL + A-site mRNA GUA + Paromomycin PubMed | Weixlbaumer, A et al, NSMB 14, 498-502(2007)
2VQE 1523 903 681 2.5 2008-04-29 rRNA Thermus thermophilus M26923 T30S + tRNA with modified Uridine PubMed | Kurata, S et al, JBC 283, 18801-18811(2008)
2VQF 1524 900 674 2.9 2008-04-29 rRNA Thermus thermophilus M26923 T30S + tRNA with modified Uridine PubMed | Kurata, S et al, JBC 283, 18801-18811(2008)
2ZM6 1506 787 649 3.3 2009-04-14 rRNA Thermus thermophilus T30S Not in PubMed | Kaminishi, T et al, To be published
1J5A 2774 1256 912 3.5 2002-03-08 rRNA Deinococcus radiodurans D50S (with no 5S) + Clarithromycin PubMed | Schluenzen, F et al, Nature 413, 814-821(2001)
1JZX 2774 1262 920 3.1 2001-10-26 rRNA Deinococcus radiodurans D50S (lacks 5S rRNA) + Clindamycin PubMed | Schluenzen, F et al, Nature 413, 814-821(2001)
1JZY 2774 1212 923 3.5 2001-10-26 rRNA Deinococcus radiodurans D50S (lacks 5S rRNA) + Clindamycin PubMed | Schluenzen, F et al, Nature 413, 814-821(2001)
1JZZ 2774 1257 913 3.8 2001-10-26 rRNA Deinococcus radiodurans D50S (lacks 5S rRNA) + Clindamycin PubMed | Schluenzen, F et al, Nature 413, 814-821(2001)
1K01 2774 1263 922 3.5 2001-10-26 rRNA Deinococcus radiodurans D50S (lacks 5S rRNA) + Chloramphenicol PubMed | Schluenzen, F et al, Nature 413, 814-821(2001)
1KC9 2889 1104 n/a 3.1 2001-11-30 rRNA Deinococcus radiodurans D50S native PubMed | Harms, JM et al, Cell 107, 679-688(2001)
1KPJ 2884 1188 n/a 3.1 2002-01-07 rRNA Deinococcus radiodurans D50S native PubMed | Harms, JM et al, Cell 107, 679-688(2001)
1LNR 2884 1188 n/a 3.1 2002-06-07 rRNA Deinococcus radiodurans D50S native PubMed | Harms, JM et al, Cell 107, 679-688(2001)
1NJM 2791 1132 868 3.6 2003-02-11 rRNA Deinococcus radiodurans D50S (lacks 5S rRNA) + tRNA-ASM + Sparsomycin PubMed | Bashan, A et al, Mol Cell 11, 91-102(2003)
1NJN 2766 1125 856 3.7 2003-02-11 rRNA Deinococcus radiodurans D50S (lacks 5S rRNA) PubMed | Bashan, A et al, Mol Cell 11, 91-102(2003)
1NJO 2770 1123 865 3.7 2003-02-11 rRNA Deinococcus radiodurans D50S (lacks 5S rRNA) + ACC-Puromycin PubMed | Bashan, A et al, Mol Cell 11, 91-102(2003)
1NJP 2791 1139 871 3.5 2003-02-11 rRNA Deinococcus radiodurans D50S (lacks 5S rRNA) + tRNA-ASM PubMed | Bashan, A et al, Mol Cell 11, 91-102(2003)
1NKW 2884 1207 902 3.1 2003-02-11 rRNA Deinococcus radiodurans D50S native refined PubMed | Harms, JM et al, Cell 107, 679-688(2001)
1NWX 2884 1221 910 3.5 2003-03-18 rRNA Deinococcus radiodurans D50S + ABT-773 PubMed | Schluenzen, F et al, Structure 11, 329-338(2003)
1NWY 2884 1222 906 3.3 2003-03-18 rRNA Deinococcus radiodurans D50S + Azithromycin PubMed | Schluenzen, F et al, Structure 11, 329-338(2003)
1OND 2765 1170 875 3.4 2003-04-15 rRNA Deinococcus radiodurans D50S (with no 5S) + Troleandomycin PubMed | Berisio, R et al, NSB 10, 366-370(2003)
1P9X 2738 1124 850 3.4 2003-04-15 rRNA Deinococcus radiodurans D50S (with no 5S) + Telithromycin PubMed | Berisio, R et al, JB 185, 4276-4279(2003)
1SM1 2884 1164 862 3.42 2004-08-03 rRNA Deinococcus radiodurans D50S + Quinupristin + Dalfopristin PubMed | Harms, JM et al, BMC Biol 2, 4(2004)
1XBP 2884 1136 844 3.5 2005-03-01 rRNA Deinococcus radiodurans D50S + Tiamulin PubMed | Schluenzen, F et al, MM 54, 1287-1294(2004)
1Y69 2884 1308 958 3.33 2005-03-01 rRNA Deinococcus radiodurans D50S + RRF domain I PubMed | Wilson, DN et al, EMBO J 24, 251-260(2005)
1Z58 2766 1049 754 3.8 2005-06-28 rRNA Deinococcus radiodurans D50S (lacks 5S rRNA) + Rapamycin PubMed | Amit, M et al, FEBSL 579, 3207-3213(2005)
2AAR 2766 1366 1014 3.5 2005-08-23 rRNA Deinococcus radiodurans D50S (lacks 5S rRNA) + TrgF PubMed | Baram, D et al, PNAS 102, 12017-12022(2005)
2D3O 2802 1281 953 3.35 2005-12-06 rRNA Deinococcus radiodurans D50S (lacks 5S rRNA) + TrgF PubMed | Schlunzen, F et al, Structure 13, 1685-1694(2005)
2OGM 2766 1306 1004 3.5 2007-05-01 rRNA Deinococcus radiodurans D50S (lacking 5S rRNA) + Pleuromutilin PubMed | Davidovich, C et al, PNAS 104, 4291-4296(2007)
2OGN 2766 1258 889 3.56 2007-05-01 rRNA Deinococcus radiodurans D50S (lacking 5S rRNA) + Pleuromutilin PubMed | Davidovich, C et al, PNAS 104, 4291-4296(2007)
2OGO 2765 1268 920 3.66 2007-05-01 rRNA Deinococcus radiodurans D50S (lacking 5S rRNA) + Pleuromutilin PubMed | Davidovich, C et al, PNAS 104, 4291-4296(2007)
2O43 2766 1193 837 3.6 2007-12-04 rRNA Deinococcus radiodurans D50S (lacking 5S rRNA) + Erythromycin Not in PubMed | Pyetan, E et al, Pure Appl Chem 79, 955-968(2007)
2O44 2766 1219 891 3.3 2007-12-04 rRNA Deinococcus radiodurans D50S (lacking 5S rRNA) + Josamycin Not in PubMed | Pyetan, E et al, Pure Appl Chem 79, 955-968(2007)
2O45 2766 1099 744 3.6 2007-12-04 rRNA Deinococcus radiodurans D50S (lacking 5S rRNA) + RU-69874 Not in PubMed | Pyetan, E et al, Pure Appl Chem 79, 955-968(2007)
2ZJP 2808 1521 1125 3.7 2008-06-17 rRNA Deinococcus radiodurans D50S + Nosiheptide PubMed | Harms, JM et al, MC 30, 26-38(2008)
2ZJQ 2808 1529 1127 3.3 2008-06-17 rRNA Deinococcus radiodurans D50S + Microccocin PubMed | Harms, JM et al, MC 30, 26-38(2008)
2ZJR 2808 1621 1181 2.91 2008-06-17 rRNA Deinococcus radiodurans D50S native refined PubMed | Harms, JM et al, MC 30, 26-38(2008)
3CF5 2808 1537 1160 3.3 2008-06-17 rRNA Deinococcus radiodurans D50S + Thiostrepton + Micrococcin PubMed | Harms, JM et al, Mol Cell 30, 26-38(2008)
3DLL 2808 1461 1101 3.5 2008-09-16 rRNA Deinococcus radiodurans D50S + Oxazolidone PubMed | Wilson, DN et al, PNAS 105, 13339-13344(2008)
3FWO 2883 1253 899 3.71 2010-01-09 rRNA Deinococcus radiodurans D23S + D5S (with no proteins) PubMed | Auerbach, T et al, Biotechnologia 1, 24-35(2009)
1YL3 2995 1029 777 5.5 2005-04-12 rRNA Thermus thermophilus HB8 T70S-50S PubMed | Jenner, L et al, Science 308, 120-123(2005)
1YL4 1733 716 552 5.5 2005-04-12 rRNA Thermus thermophilus HB8 T70S-30S + AP-tRNAs + mRNA PubMed | Jenner, L et al, Science 308, 120-123(2005)
2B64 1673 783 595 5.9 2006-01-10 rRNA Thermus thermophilus HB8 T70S-30S + P-tRNA + E-tRNA + mRNA + RF1 PubMed | Petry, S et al, Cell 123, 1255-1266(2005)
2B66 2937 1136 811 5.9 2006-01-10 rRNA Thermus thermophilus HB8 T70S-50S PubMed | Petry, S et al, Cell 123, 1255-1266(2005)
2B9M 1673 778 589 6.76 2006-01-10 rRNA Thermus thermophilus HB8 T70S-30S + P-tRNA + E-tRNA + mRNA + RF2 PubMed | Petry, S et al, Cell 123, 1255-1266(2005)
2B9N 2937 1119 806 6.76 2006-01-10 rRNA Thermus thermophilus HB8 T70S-50S PubMed | Petry, S et al, Cell 123, 1255-1266(2005)
2B9O 1673 777 595 6.46 2006-01-10 rRNA Thermus thermophilus HB8 T70S-30S + P-tRNA + E-tRNA + mRNA PubMed | Petry, S et al, Cell 123, 1255-1266(2005)
2B9P 2937 1130 816 6.46 2006-01-10 rRNA Thermus thermophilus HB8 T70S-50S PubMed | Petry, S et al, Cell 123, 1255-1266(2005)
2J00 1687 925 676 2.8 2006-09-28 rRNA Thermus thermophilus HB8 T70S-30S1 + tRNA + mRNA + Paromomycin PubMed | Selmer, M et al, Science 313, 1935-1942(2006)
2J01 2891 1595 1228 2.8 2006-09-28 rRNA Thermus thermophilus HB8 T70S-50S1 + tRNA PubMed | Selmer, M et al, Science 313, 1935-1942(2006)
2J02 1687 921 677 2.8 2006-09-28 rRNA Thermus thermophilus HB8 T70S-30S2 + tRNA + mRNA + Paromomycin PubMed | Selmer, M et al, Science 313, 1935-1942(2006)
2J03 2891 1595 1226 2.8 2006-09-28 rRNA Thermus thermophilus HB8 T70S-50S2 + tRNA PubMed | Selmer, M et al, Science 313, 1935-1942(2006)
2HGI 1667 755 574 5 2006-11-07 rRNA Thermus thermophilus HB8 T70S-30S + tRNAs PubMed | Yusupova, G et al, Nature 444, 391-394(2006)
2HGJ 3012 1185 906 5 2006-11-07 rRNA Thermus thermophilus HB8 T70S-50S PubMed | Yusupova, G et al, Nature 444, 391-394(2006)
2HGP 1793 768 585 5.5 2006-11-07 rRNA Thermus thermophilus HB8 T70S-30S + tRNAs + mRNA PubMed | Yusupova, G et al, Nature 444, 391-394(2006)
2HGQ 3012 1173 896 5.5 2006-11-07 rRNA Thermus thermophilus HB8 T70S-50S PubMed | Yusupova, G et al, Nature 444, 391-394(2006)
2HGR 1694 761 571 4.51 2006-11-07 rRNA Thermus thermophilus HB8 T70S-30S + tRNAs + mRNA PubMed | Yusupova, G et al, Nature 444, 391-394(2006)
2HGU 3012 1229 920 4.51 2006-11-07 rRNA Thermus thermophilus HB8 T70S-50S PubMed | Yusupova, G et al, Nature 444, 391-394(2006)
2V46 1609 751 574 3.5 2007-07-31 rRNA Thermus thermophilus HB8 T70S-30S1 + RRF + P-tRNA ASL + E-tRNA + mRNA PubMed | Weixlbaumer, A et al, NSMB 14, 733-737(2007)
2V47 2886 1496 1104 3.5 2007-07-31 rRNA Thermus thermophilus HB8 T70S-50S1 PubMed | Weixlbaumer, A et al, NSMB 14, 733-737(2007)
2V48 1609 752 566 3.5 2007-07-31 rRNA Thermus thermophilus HB8 T70S-30S2 + RRF + P-tRNA ASL + E-tRNA + mRNA PubMed | Weixlbaumer, A et al, NSMB 14, 733-737(2007)
2V49 2886 1477 1101 3.5 2007-07-31 rRNA Thermus thermophilus HB8 T70S-50S2 PubMed | Weixlbaumer, A et al, NSMB 14, 733-737(2007)
2JL5 1664 860 n/a 3.45 2008-11-04 rRNA Thermus thermophilus HB8 T70S-30S1 + tRNA + RF2 PubMed | Weixlbaumer, A et al, Science 322, 953-956(2008)
2JL6 2970 1681 n/a 3.45 2008-11-04 rRNA Thermus thermophilus HB8 T70S-50S1 + RF2 PubMed | Weixlbaumer, A et al, Science 322, 953-956(2008)
2JL7 1664 876 n/a 3.45 2008-11-04 rRNA Thermus thermophilus HB8 T70S-30S2 + tRNA + RF2 PubMed | Weixlbaumer, A et al, Science 322, 953-956(2008)
2JL8 2970 1681 n/a 3.45 2008-11-04 rRNA Thermus thermophilus HB8 T70S-50S2 + RF2 PubMed | Weixlbaumer, A et al, Science 322, 953-956(2008)
3FIC 1737 943 687 6.4 2009-03-03 rRNA Thermus thermophilus HB8 T70S-30S + A-tRNA + EF-TU-GDP + Kirromycin PubMed | Schuette, JC et al, EMBO J 28, 755-765(2009)
3FIN 2971 1629 1252 6.4 2009-03-03 rRNA Thermus thermophilus HB8 T70S-50S PubMed | Schuette, JC et al, EMBO J 28, 755-765(2009)
2WDG 1743 931 692 3.3 2009-04-14 rRNA Thermus thermophilus HB8 T70S-30S1 + P-tRNA + E-tRNA + mRNA + A-tRNA PubMed | Voorhees, RM et al, NSMB 16, 528-533(2009)
2WDH 1743 932 693 3.3 2009-04-14 rRNA Thermus thermophilus HB8 T70S-30S1 + P-tRNA + E-tRNA + mRNA + A-tRNA PubMed | Voorhees, RM et al, NSMB 16, 528-533(2009)
2WDI 2926 1660 1273 3.3 2009-04-14 rRNA Thermus thermophilus HB8 T70S-50S1 PubMed | Voorhees, RM et al, NSMB 16, 528-533(2009)
2WDJ 2926 1660 1275 3.3 2009-04-14 rRNA Thermus thermophilus HB8 T70S-50S2 PubMed | Voorhees, RM et al, NSMB 16, 528-533(2009)
2WDK 1743 927 692 3.5 2009-04-14 rRNA Thermus thermophilus HB8 T70S-30S1 + P-tRNA + A-tRNA + E-tRNA + mRNA PubMed | Voorhees, RM et al, NSMB 16, 528-533(2009)
2WDL 2926 1675 1286 3.5 2009-04-14 rRNA Thermus thermophilus HB8 T70S-50S1 PubMed | Voorhees, RM et al, NSMB 16, 528-533(2009)
2WDM 1743 920 693 3.5 2009-04-14 rRNA Thermus thermophilus HB8 T70S-30S1 + P-tRNA + A-tRNA + E-tRNA + mRNA PubMed | Voorhees, RM et al, NSMB 16, 528-533(2009)
2WDN 2926 1672 1291 3.5 2009-04-14 rRNA Thermus thermophilus HB8 T70S-50S2 PubMed | Voorhees, RM et al, NSMB 16, 528-533(2009)
2WH1 1664 874 641 3.45 2009-05-19 rRNA Thermus thermophilus HB8 T70S-30S1 + tRNA + RF2 PubMed | Weixlbaumer, A et al, Science 322, 953-956(2008)
2WH2 3005 1706 1318 3.45 2009-05-19 rRNA Thermus thermophilus HB8 T70S-50S1 + RF2 PubMed | Weixlbaumer, A et al, Science 322, 953-956(2008)
2WH3 1664 889 645 3.45 2009-05-19 rRNA Thermus thermophilus HB8 T70S-30S2 + tRNA + RF2 PubMed | Weixlbaumer, A et al, Science 322, 953-956(2008)
2WH4 3005 1699 1316 3.45 2009-05-19 rRNA Thermus thermophilus HB8 T70S-50S2 + RF2 PubMed | Weixlbaumer, A et al, Science 322, 953-956(2008)
3HUW 1577 840 614 3.1 2009-09-29 rRNA Thermus thermophilus HB8 T70S1-30S + P-tRNA + mRNA + EF-P PubMed | Blaha, G et al, Science 325, 966-970(2009)
3HUX 2886 1658 1240 3.1 2009-09-29 rRNA Thermus thermophilus HB8 T70S1-50S PubMed | Blaha, G et al, Science 325, 966-970(2009)
3HUY 1586 878 648 3.1 2009-09-29 rRNA Thermus thermophilus HB8 T70S2-30S + P-tRNA + mRNA + EF-P PubMed | Blaha, G et al, Science 325, 966-970(2009)
3HUZ 2896 1616 1207 3.1 2009-09-29 rRNA Thermus thermophilus HB8 T70S2-50S PubMed | Blaha, G et al, Science 325, 966-970(2009)
2WRI 1669 910 674 3.6 2009-10-20 rRNA Thermus thermophilus HB8 T70S1-30S + PE-tRNAs + mRNA + EF-G PubMed | Gao, Y-G et al, Science 326, 694-699(2009)
2WRJ 3020 1610 1101 3.6 2009-10-20 rRNA Thermus thermophilus HB8 T70S1-50S PubMed | Gao, Y-G et al, Science 326, 694-699(2009)
2WRK 1669 916 680 3.6 2009-10-20 rRNA Thermus thermophilus HB8 T70S2-30S + PE-tRNAs + mRNA + EF-G PubMed | Gao, Y-G et al, Science 326, 694-699(2009)
2WRL 3020 1588 1255 3.6 2009-10-20 rRNA Thermus thermophilus HB8 T70S2-50S PubMed | Gao, Y-G et al, Science 326, 694-699(2009)
2WRN 1745 790 580 3.6 2009-10-20 rRNA Thermus thermophilus HB8 T70S1-30S + PE-tRNAs + mRNA + EF-Tu PubMed | Schmeing, TM et al, Science 326, 688-694(2009)
2WRO 3020 1429 1046 3.6 2009-10-20 rRNA Thermus thermophilus HB8 T70S1-50S PubMed | Schmeing, TM et al, Science 326, 688-694(2009)
2WRQ 1745 778 589 3.6 2009-10-20 rRNA Thermus thermophilus HB8 T70S2-30S + PE-tRNAs + mRNA + EF-Tu PubMed | Schmeing, TM et al, Science 326, 688-694(2009)
2WRR 3020 1425 1051 3.6 2009-10-20 rRNA Thermus thermophilus HB8 T70S2-50S PubMed | Schmeing, TM et al, Science 326, 688-694(2009)
3KIQ 1670 913 666 3.3 2009-12-15 rRNA Thermus thermophilus HB8 T70S1-30S + PE-tRNAs + mRNA pre-cleavage PubMed | Neubauer, C et al, Cell 139, 1084-1095(2009)
3KIR 2967 1681 1282 3.3 2009-12-15 rRNA Thermus thermophilus HB8 T70S1-50S PubMed | Neubauer, C et al, Cell 139, 1084-1095(2009)
3KIS 1670 912 665 3.3 2009-12-15 rRNA Thermus thermophilus HB8 T70S2-30S + PE-tRNAs + mRNA pre-cleavage PubMed | Neubauer, C et al, Cell 139, 1084-1095(2009)
3KIT 2967 1684 1284 3.3 2009-12-15 rRNA Thermus thermophilus HB8 T70S2-50S PubMed | Neubauer, C et al, Cell 139, 1084-1095(2009)
3KIU 1670 879 648 3.6 2009-12-15 rRNA Thermus thermophilus HB8 T70S1-30S + PE-tRNAs + mRNA post-cleavage PubMed | Neubauer, C et al, Cell 139, 1084-1095(2009)
3KIW 2967 1681 1271 3.6 2009-12-15 rRNA Thermus thermophilus HB8 T70S1-50S PubMed | Neubauer, C et al, Cell 139, 1084-1095(2009)
3KIX 1670 884 649 3.6 2009-12-15 rRNA Thermus thermophilus HB8 T70S2-30S + PE-tRNAs + mRNA post-cleavage PubMed | Neubauer, C et al, Cell 139, 1084-1095(2009)
3KIY 2967 1678 1272 3.6 2009-12-15 rRNA Thermus thermophilus HB8 T70S2-50S PubMed | Neubauer, C et al, Cell 139, 1084-1095(2009)
3KNH 1732 835 626 3 2010-02-16 rRNA Thermus thermophilus HB8 T70S1-30S + APE-tRNAs + mRNA + Viomycin PubMed | Stanley, RE et al, NSMB 17, 289-293(2010)
3KNI 2918 1550 1186 3 2010-02-16 rRNA Thermus thermophilus HB8 T70S1-50S PubMed | Stanley, RE et al, NSMB 17, 289-293(2010)
3KNJ 1732 821 620 3 2010-02-16 rRNA Thermus thermophilus HB8 T70S2-30S + APE-tRNAs + mRNA + Viomycin PubMed | Stanley, RE et al, NSMB 17, 289-293(2010)
3NKK 2918 1442 1085 3 2010-02-16 rRNA Thermus thermophilus HB8 T70S2-50S PubMed | Stanley, RE et al, NSMB 17, 289-293(2010)
3KNL 1730 927 703 3.45 2010-02-16 rRNA Thermus thermophilus HB8 T70S1-30S + APE-tRNAs + mRNA + Capreomycin PubMed | Stanley, RE et al, NSMB 17, 289-293(2010)
3KNM 2908 1664 1251 3.45 2010-02-16 rRNA Thermus thermophilus HB8 T70S1-50S PubMed | Stanley, RE et al, NSMB 17, 289-293(2010)
3KNN 1729 917 704 3.45 2010-02-16 rRNA Thermus thermophilus HB8 T70S2-30S + APE-tRNAs + mRNA + Capreomycin PubMed | Stanley, RE et al, NSMB 17, 289-293(2010)
3KNO 2894 1614 1209 3.45 2010-02-16 rRNA Thermus thermophilus HB8 T70S2-50S PubMed | Stanley, RE et al, NSMB 17, 289-293(2010)
3I8F 3031 1663 1311 3.1 2010-04-21 rRNA Thermus thermophilus HB8 T70S-50SB PubMed | Jenner, LB et al, NSMB 17, 555-560(2010)
3I8G 1774 965 734 3.1 2010-04-21 rRNA Thermus thermophilus HB8 T70S-30SB + APE-tRNAs + mRNA PubMed | Jenner, LB et al, NSMB 17, 555-560(2010)
3I8H 1773 974 739 3.1 2010-04-21 rRNA Thermus thermophilus HB8 T70S-30SA + APE-tRNAs + mRNA PubMed | Jenner, LB et al, NSMB 17, 555-560(2010)
3I8I 3034 1840 1342 3.1 2010-04-21 rRNA Thermus thermophilus HB8 T70S-50SA PubMed | Jenner, LB et al, NSMB 17, 555-560(2010)
3I9B 1694 892 685 3.5 2010-04-21 rRNA Thermus thermophilus HB8 T70S-30SB + PE-tRNAs + mRNA PubMed | Jenner, LB et al, NSMB 17, 555-560(2010)
3I9C 3005 1651 1267 3.5 2010-04-21 rRNA Thermus thermophilus HB8 T70S-50SB PubMed | Jenner, LB et al, NSMB 17, 555-560(2010)
3I9D 1692 898 688 3.5 2010-04-21 rRNA Thermus thermophilus HB8 T70S-30SA + PE-tRNAs + mRNA PubMed | Jenner, LB et al, NSMB 17, 555-560(2010)
3I9E 3006 1710 1308 3.5 2010-04-21 rRNA Thermus thermophilus HB8 T70S-50SA PubMed | Jenner, LB et al, NSMB 17, 555-560(2010)
2X9R 1664 871 655 3.1 2010-05-12 rRNA Thermus thermophilus HB8 T70S1-30S + PE-tRNAs + mRNA + RF-2 PubMed | Jin, H et al, PNAS 107, 8593-8598(2010)
2X9S 3020 1695 1291 3.1 2010-05-12 rRNA Thermus thermophilus HB8 T70S1-50S PubMed | Jin, H et al, PNAS 107, 8593-8598(2010)
2X9T 1664 879 658 3.1 2010-05-12 rRNA Thermus thermophilus HB8 T70S2-30S + PE-tRNAs + mRNA + RF-2 PubMed | Jin, H et al, PNAS 107, 8593-8598(2010)
2X9U 3020 1698 1290 3.1 2010-05-12 rRNA Thermus thermophilus HB8 T70S2-50S PubMed | Jin, H et al, PNAS 107, 8593-8598(2010)
2XFZ 1678 821 615 3.2 2010-09-22 rRNA Thermus thermophilus HB8 T70S-30S1 + EP-tRNA + mRNA + Colicin E3 PubMed | Ng, CL et al NSMB 17, 1241-1246(2010)
2XG0 2926 1643 1250 3.2 2010-09-22 rRNA Thermus thermophilus HB8 T70S-50S1 + Colicin E3 PubMed | Ng, CL et al NSMB 17, 1241-1246(2010)
2XG1 1670 790 577 3.2 2010-09-22 rRNA Thermus thermophilus HB8 T70S-30S2 + EP-tRNA + mRNA + Colicin E3 PubMed | Ng, CL et al NSMB 17, 1241-1246(2010)
2XG2 2926 1639 1251 3.2 2010-09-22 rRNA Thermus thermophilus HB8 T70S-30S2 + Colicin E3 PubMed | Ng, CL et al NSMB 17, 1241-1246(2010)
3OGE 1504 831 601 3 2010-10-20 rRNA Thermus thermophilus HB8 T70S1-30S + Chloramphenicol PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OGY 1504 826 598 3 2010-10-20 rRNA Thermus thermophilus HB8 T70S2-30S + Chloramphenicol PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OH5 2844 1631 1224 3 2010-10-20 rRNA Thermus thermophilus HB8 T70S1-50S PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OH7 2844 1630 1224 3 2010-10-20 rRNA Thermus thermophilus HB8 T70S2-50S PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OHC 1504 818 595 3 2010-10-20 rRNA Thermus thermophilus HB8 T70S1-30S + Erythromycin PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OHD 1504 814 593 3 2010-10-20 rRNA Thermus thermophilus HB8 T70S2-30S + Erythromycin PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OHJ 2844 1633 1233 3 2010-10-20 rRNA Thermus thermophilus HB8 T70S1-50S PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OHK 2844 1621 1226 3 2010-10-20 rRNA Thermus thermophilus HB8 T70S2-50S PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OHY 1504 823 591 3 2010-10-20 rRNA Thermus thermophilus HB8 T70S1-30S + Azithromycin PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OHZ 2844 1632 1232 3 2010-10-20 rRNA Thermus thermophilus HB8 T70S1-50S PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OI0 1504 824 593 3 2010-10-20 rRNA Thermus thermophilus HB8 T70S2-30S + Azithromycin PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OI1 2844 1639 1229 3 2010-10-20 rRNA Thermus thermophilus HB8 T70S2-50S PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OI2 1504 818 573 3.1 2010-10-20 rRNA Thermus thermophilus HB8 T70S1-30S + Telithromycin PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OI3 2844 1606 1179 3.1 2010-10-20 rRNA Thermus thermophilus HB8 T70S1-50S PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OI4 1504 820 570 3.1 2010-10-20 rRNA Thermus thermophilus HB8 T70S2-30S + Telithromycin PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OI5 2844 1595 1180 3.1 2010-10-20 rRNA Thermus thermophilus HB8 T70S2-50S PubMed | Bulkley, D et al, PNAS 107, 17158-17163(2010)
3OTO 1513 800 571 3.69 2010-09-29 rRNA Thermus thermophilus HB8 T30S KsgA mutant PubMed | Demirci, H et al, RNA 16, 2319-2324(2010)
2XQD 1746 943 707 3.1 2010-11-17 rRNA Thermus thermophilus HB8 T70S-30S + A-tRNA + EF-Tu + GTP PubMed | Voorhees, RM et al, Science 330, 835-838(2010)
2XQE 3020 1609 1229 3.1 2010-11-17 rRNA Thermus thermophilus HB8 T70S-50S PubMed | Voorhees, RM et al, Science 330, 835-838(2010)
2XSY 1592 855 649 7.8 2010-12-08 rRNA Thermus thermophilus HB8 T70S-30S + P-tRNA + mRNA + EF-G (Pre-TI) PubMed | Ratje, AH et al, Nature 468, 713-716(2010)
2XTG 3020 1603 1239 7.8 2010-12-08 rRNA Thermus thermophilus HB8 T70S-50S + E-tRNA (Pre-TI) PubMed | Ratje, AH et al, Nature 468, 713-716(2010)
2XUX 3020 1598 1251 7.6 2010-12-08 rRNA Thermus thermophilus HB8 T70S-50S + E-tRNA (Post-TI) PubMed | Ratje, AH et al, Nature 468, 713-716(2010)
2XUY 1592 862 646 7.6 2010-12-08 rRNA Thermus thermophilus HB8 T70S-30S + P-tRNA + mRNA + EF-G (Post-TI) PubMed | Ratje, AH et al, Nature 468, 713-716(2010)
1VS9 3009 949 n/a 3.7 2006-09-26 rRNA Thermus thermophilus HB27 T70S-50S PubMed | Korostelev, A et al, Cell 126, 1065-1077(2006)
2I1C 1669 532 n/a 3.7 2006-09-26 rRNA Thermus thermophilus HB27 T70S-30S + PE-tRNAs + mRNA PubMed | Korostelev, A et al, Cell 126, 1065-1077(2006)
1VSA 3009 1296 1096 3.71 2007-05-15 rRNA Thermus thermophilus HB27 T70S-50S PubMed | Korostelev, A et al, Cell 126, 1065-1077(2006)
2OW8 1660 702 565 3.71 2007-05-15 rRNA Thermus thermophilus HB27 T70S-30S + PE-tRNAs + mRNA PubMed | Korostelev, A et al, Cell 126, 1065-1077(2006)
1VSP 3009 1386 1136 3.83 2007-11-13 rRNA Thermus thermophilus HB27 T70S-50S PubMed | Korostelev, A et al,PNAS 104, 16840-16843(2007)
2QNH 1685 734 614 3.83 2007-11-13 rRNA Thermus thermophilus HB27 T70S-30S + PE-tRNAs + mRNA PubMed | Korostelev, A et al,PNAS 104, 16840-16843(2007)
3D5A 1670 908 709 3.21 2008-10-07 rRNA Thermus thermophilus HB27 T70S-30S1 + E-tRNA + mRNA + P-tRNA + RF1 PubMed | Laurberg, M et al, Nature 454, 852-857(2008)
3D5B 2998 1689 1279 3.21 2008-10-07 rRNA Thermus thermophilus HB27 T70S-50S1 PubMed | Laurberg, M et al, Nature 454, 852-857(2008)
3D5C 1670 909 707 3.21 2008-10-07 rRNA Thermus thermophilus HB27 T70S-30S1 + E-tRNA + mRNA + P-tRNA + RF1 PubMed | Laurberg, M et al, Nature 454, 852-857(2008)
3D5D 2998 1686 1277 3.2 2008-10-07 rRNA Thermus thermophilus HB27 T70S-50S2 PubMed | Laurberg, M et al, Nature 454, 852-857(2008)
3F1E 1668 938 709 3 2008-12-23 rRNA Thermus thermophilus HB27 T70S-30S1 + PE-tRNAs + mRNA + RF2 PubMed | Korostelev, A et al, PNAS 105, 19684-19689(2008)
3F1F 2998 1682 1307 3 2008-12-23 rRNA Thermus thermophilus HB27 T70S-50S1 PubMed | Korostelev, A et al, PNAS 105, 19684-19689(2008)
3F1G 1668 935 707 3 2008-12-23 rRNA Thermus thermophilus HB27 T70S-30S2 + PE-tRNAs + mRNA + RF2 PubMed | Korostelev, A et al, PNAS 105, 19684-19689(2008)
3F1H 2998 1690 1310 3 2008-12-23 rRNA Thermus thermophilus HB27 T70S-50S2 PubMed | Korostelev, A et al, PNAS 105, 19684-19689(2008)
3MR8 1588 857 664 3.62 2010-07-14 rRNA Thermus thermophilus HB27 T70SA-30S + P-tRNA + mRNA + RF1 PubMed | Korostelev, A et al, EMBO J 29, 2577-2585(2010)
3MS1 2998 1657 1311 3.62 2010-07-14 rRNA Thermus thermophilus HB27 T70SA-50S PubMed | Korostelev, A et al, EMBO J 29, 2577-2585(2010)
3MS0 1590 858 663 3.62 2010-07-14 rRNA Thermus thermophilus HB27 T70SB-30S + P-tRNA + mRNA + RF1 PubMed | Korostelev, A et al, EMBO J 29, 2577-2585(2010)
3MRZ 2998 1657 1310 3.62 2010-07-14 rRNA Thermus thermophilus HB27 T70SB-50S PubMed | Korostelev, A et al, EMBO J 29, 2577-2585(2010)
3PYN 1541 851 n/a 3.5 2011-02-09 rRNA Thermus thermophilus HB27 T70S-30S1 + PSIV IGR IRES RNA PubMed | Zhu, J et al, PNAS 108, 1839-1844(2011)
3PYO 2879 1661 n/a 3.5 2011-02-09 rRNA Thermus thermophilus HB27 T70S-50S1 PubMed | Zhu, J et al, PNAS 108, 1839-1844(2011)
3PYQ 1541 852 n/a 3.5 2011-02-09 rRNA Thermus thermophilus HB27 T70S-30S2 + PSIV IGR IRES RNA PubMed | Zhu, J et al, PNAS 108, 1839-1844(2011)
3PYR 2879 1660 n/a 3.5 2011-02-09 rRNA Thermus thermophilus HB27 T70S-50S2 PubMed | Zhu, J et al, PNAS 108, 1839-1844(2011)
3PYS 1540 836 n/a 3.4 2011-02-09 rRNA Thermus thermophilus HB27 T70S-30S1 + CrPV IGR IRES RNA PubMed | Zhu, J et al, PNAS 108, 1839-1844(2011)
3PYT 2879 1657 n/a 3.4 2011-02-09 rRNA Thermus thermophilus HB27 T70S-50S1 PubMed | Zhu, J et al, PNAS 108, 1839-1844(2011)
3PYU 1540 829 n/a 3.4 2011-02-09 rRNA Thermus thermophilus HB27 T70S-30S2 + CrPV IGR IRES RNA PubMed | Zhu, J et al, PNAS 108, 1839-1844(2011)
3PYV 2879 1655 n/a 3.4 2011-02-09 rRNA Thermus thermophilus HB27 T70S-50S2 PubMed | Zhu, J et al, PNAS 108, 1839-1844(2011)
1VOQ 1526 548 388 11.5 2004-11-16 rRNA Escherichia coli E70S-30S1 PubMed | Vila-Sanjurjo, A et al, NSMB 11, 1054-1059(2004)
1VOR 2943 922 584 11.5 2004-11-16 rRNA Escherichia coli E70S-50S1 PubMed | Vila-Sanjurjo, A et al, NSMB 11, 1054-1059(2004)
1VOS 1526 580 390 11.5 2004-11-16 rRNA Escherichia coli E70S-30S2 PubMed | Vila-Sanjurjo, A et al, NSMB 11, 1054-1059(2004)
1VOU 2943 987 586 11.5 2004-11-16 rRNA Escherichia coli E70S-50S2 PubMed | Vila-Sanjurjo, A et al, NSMB 11, 1054-1059(2004)
1VOV 1526 569 386 11.5 2004-11-16 rRNA Escherichia coli E70S-30S3 PubMed | Vila-Sanjurjo, A et al, NSMB 11, 1054-1059(2004)
1VOW 2943 921 583 11.5 2004-11-16 rRNA Escherichia coli E70S-50S3 PubMed | Vila-Sanjurjo, A et al, NSMB 11, 1054-1059(2004)
1VOX 1526 584 388 11.5 2004-11-16 rRNA Escherichia coli E70S-30S4 PubMed | Vila-Sanjurjo, A et al, NSMB 11, 1054-1059(2004)
1VOY 2943 994 588 11.5 2004-11-16 rRNA Escherichia coli E70S-50S4 PubMed | Vila-Sanjurjo, A et al, NSMB 11, 1054-1059(2004)
1VOZ 1526 572 386 11.5 2004-11-16 rRNA Escherichia coli E70S-30S5 PubMed | Vila-Sanjurjo, A et al, NSMB 11, 1054-1059(2004)
1VP0 2943 992 583 11.5 2004-11-16 rRNA Escherichia coli E70S-50S5 PubMed | Vila-Sanjurjo, A et al, NSMB 11, 1054-1059(2004)
2AVY 1530 866 679 3.5 2005-11-08 rRNA Escherichia coli E70S-30S1 PubMed | Schuwirth, BS et al,Science 310, 827-834(2005)
2AW4 2958 1644 1341 3.5 2005-11-08 rRNA Escherichia coli E70S-50S1 PubMed | Schuwirth, BS et al,Science 310, 827-834(2005)
2AW7 1530 871 686 3.5 2005-11-08 rRNA Escherichia coli E70S-30S2 PubMed | Schuwirth, BS et al,Science 310, 827-834(2005)
2AWB 2958 1652 1346 3.5 2005-11-08 rRNA Escherichia coli E70S-50S2 PubMed | Schuwirth, BS et al,Science 310, 827-834(2005)
1VS5 1530 867 670 3.46 2006-09-26 rRNA Escherichia coli E70S-30S1 + Kasugamycin PubMed | Schuwirth, BS et al, NSMB 13, 879-886(2006)
1VS6 2958 1648 1335 3.46 2006-09-26 rRNA Escherichia coli E70S-50S1 + Kasugamycin PubMed | Schuwirth, BS et al, NSMB 13, 879-886(2006)
1VS7 1530 878 686 3.46 2006-09-26 rRNA Escherichia coli E70S-30S2 + Kasugamycin PubMed | Schuwirth, BS et al, NSMB 13, 879-886(2006)
1VS8 2958 1642 1338 3.46 2006-09-26 rRNA Escherichia coli E70S-50S2 + Kasugamycin PubMed | Schuwirth, BS et al, NSMB 13, 879-886(2006)
2GY9 1716 715 574 15 2006-09-26 rRNA Escherichia coli E70S1-30S + APE-tRNAs PubMed | Mitra, K et al, MC 22, 533-543(2006)
2GYA 2848 1034 791 15 2006-09-26 rRNA Escherichia coli E70S1-50S PubMed | Mitra, K et al, MC 22, 533-543(2006)
2GYB 1716 667 517 15 2006-09-26 rRNA Escherichia coli E70S2-30S + APE-tRNAs PubMed | Mitra, K et al, MC 22, 533-543(2006)
2GYC 2848 910 659 15 2006-09-26 rRNA Escherichia coli E70S2-50S PubMed | Mitra, K et al, MC 22, 533-543(2006)
2I2P 1553 849 662 3.22 2006-10-24 rRNA Escherichia coli E70S-30S1 + tRNA ASL + mRNA PubMed | Berk, V et al, PNAS 103, 15830-15834(2006)
2I2T 2958 1670 1336 3.22 2006-10-24 rRNA Escherichia coli E70S-50S1 PubMed | Berk, V et al, PNAS 103, 15830-15834(2006)
2I2U 1553 847 660 3.22 2006-10-24 rRNA Escherichia coli E70S-30S2 + tRNA ASL + mRNA PubMed | Berk, V et al, PNAS 103, 15830-15834(2006)
2I2V 2958 1671 1338 3.22 2006-10-24 rRNA Escherichia coli E70S-50S2 PubMed | Berk, V et al, PNAS 103, 15830-15834(2006)
2J28 3032 1687 1379 8 2006-11-08 rRNA Escherichia coli E70S-50S + Ec SRP 4.5S RNA PubMed | Halic, M etal, Nature 444, 508-511(2006)
2QOU 1530 834 646 3.93 2007-08-14 rRNA Escherichia coli E70S-30S1 + Spectinomycin PubMed | Borovinskaya, MA et al, ACS Chem Biol 2, 545-552(2007)
2QOV 2958 1601 1307 3.93 2007-08-14 rRNA Escherichia coli E70S-50S1 + Spectinomycin PubMed | Borovinskaya, MA et al, ACS Chem Biol 2, 545-552(2007)
2QOW 1530 836 656 3.93 2007-08-14 rRNA Escherichia coli E70S-30S2 + Spectinomycin PubMed | Borovinskaya, MA et al, ACS Chem Biol 2, 545-552(2007)
2QOX 2958 1612 1308 3.93 2007-08-14 rRNA Escherichia coli E70S-50S2 + Spectinomycin PubMed | Borovinskaya, MA et al, ACS Chem Biol 2, 545-552(2007)
2QOY 1530 857 662 3.5 2007-08-14 rRNA Escherichia coli E70S-30S1 + Spectinomycin + Neomycin PubMed | Borovinskaya, MA et al, ACS Chem Biol 2, 545-552(2007)
2QOZ 2958 1653 1326 3.5 2007-08-14 rRNA Escherichia coli E70S-50S1 + Spectinomycin + Neomycin PubMed | Borovinskaya, MA et al, ACS Chem Biol 2, 545-552(2007)
2QP0 1530 864 667 3.5 2007-08-14 rRNA Escherichia coli E70S-30S1 + Spectinomycin + Neomycin PubMed | Borovinskaya, MA et al, ACS Chem Biol 2, 545-552(2007)
2QP1 2958 1656 1325 3.5 2007-08-14 rRNA Escherichia coli E70S-50S1 + Spectinomycin + Neomycin PubMed | Borovinskaya, MA et al, ACS Chem Biol 2, 545-552(2007)
2QAL 1530 879 684 3.1 2007-09-25 rRNA Escherichia coli E70S-30S1 + Neomycin PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QAM 2958 1691 1343 3.21 2007-09-25 rRNA Escherichia coli E70S-50S1 + Neomycin PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QAN 1530 884 684 3.21 2007-09-25 rRNA Escherichia coli E70S-30S2 + Neomycin PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QAO 2598 1692 1348 3.21 2007-09-25 rRNA Escherichia coli E70S-50S2 + Neomycin PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QB9 1530 876 669 3.54 2007-09-25 rRNA Escherichia coli E70S-30S1 + Gentamycin PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QBA 2958 1660 1335 3.54 2007-09-25 rRNA Escherichia coli E70S-50S1 + Gentamycin PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QBB 1530 873 671 3.54 2007-09-25 rRNA Escherichia coli E70S-30S2 + Gentamycin PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QBC 2958 1668 1338 3.54 2007-09-25 rRNA Escherichia coli E70S-50S2 + Gentamycin PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QBD 1530 882 677 3.3 2007-09-25 rRNA Escherichia coli E70S-30S1 + RRF PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QBE 2958 1691 1355 3.3 2007-09-25 rRNA Escherichia coli E70S-50S1 + RRF PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QBF 1530 884 681 3.3 2007-09-25 rRNA Escherichia coli E70S-30S2 + RRF PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QBG 2958 1697 1357 3.3 2007-09-25 rRNA Escherichia coli E70S-50S2 + RRF PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QBH 1530 856 667 4 2007-09-25 rRNA Escherichia coli E70S-30S1 + Gentamycin + RRF PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QBI 2958 1640 1324 4 2007-09-25 rRNA Escherichia coli E70S-50S1 + Gentamycin + RRF PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QBJ 1530 860 665 4 2007-09-25 rRNA Escherichia coli E70S-30S2 + Gentamycin + RRF PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2QBK 2958 1641 1334 4 2007-09-25 rRNA Escherichia coli E70S-50S2 + Gentamycin + RRF PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2Z4K 1530 869 666 4.45 2007-09-25 rRNA Escherichia coli E70S-30S1 + RRF + Paromomycin PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2Z4L 2958 1647 1324 4.45 2007-09-25 rRNA Escherichia coli E70S-50S1 + RRF + Paromomycin PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2Z4M 1530 870 671 4.45 2007-09-25 rRNA Escherichia coli E70S-30S2 + RRF + Paromomycin PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2Z4N 2958 1653 1328 4.45 2007-09-25 rRNA Escherichia coli E70S-50S2 + RRF + Paromomycin PubMed | Borovinskaya, MA et al, NSMB 14, 727-732(2007)
2VHM 2958 1425 980 3.74 2008-02-26 rRNA Escherichia coli E70S-50S1 + PDF PubMed | Bingel-Erlenmeyer, R et al, Nature 452, 108-111(2008)
2VHN 2958 1393 967 3.74 2008-02-26 rRNA Escherichia coli E70S-50S2 + PDF PubMed | Bingel-Erlenmeyer, R et al, Nature 452, 108-111(2008)
2VHO 1530 635 416 3.74 2008-02-26 rRNA Escherichia coli E70S-30S1 + PDF PubMed | Bingel-Erlenmeyer, R et al, Nature 452, 108-111(2008)
2VHP 1530 628 409 3.74 2008-02-26 rRNA Escherichia coli E70S-30S2 + PDF PubMed | Bingel-Erlenmeyer, R et al, Nature 452, 108-111(2008)
3DF1 1530 847 671 3.5 2008-08-19 rRNA Escherichia coli E70S-30S1 + Hygromycin B PubMed | Borovinskaya, MA et al, RNA 14, 1590-1599(2008)
3DF2 2958 1651 1330 3.5 2008-08-19 rRNA Escherichia coli E70S-50S1 + Hygromycin B PubMed | Borovinskaya, MA et al, RNA 14, 1590-1599(2008)
3DF3 1530 852 675 3.5 2008-08-19 rRNA Escherichia coli E70S-30S2 + Hygromycin B PubMed | Borovinskaya, MA et al, RNA 14, 1590-1599(2008)
3DF4 2958 1660 1329 3.5 2008-08-19 rRNA Escherichia coli E70S-50S2 + Hygromycin B PubMed | Borovinskaya, MA et al, RNA 14, 1590-1599(2008)
3FIH 1770 918 708 6.7 2009-03-03 rRNA Escherichia coli E70S-30S + A-tRNA + EF-TU-GDP + Kirromycin PubMed | Villa, E et al, PNAS 106, 1063-1068(2009)
3FIK 3020 1635 1270 6.7 2009-03-03 rRNA Escherichia coli E70S-50S PubMed | Villa, E et al, PNAS 106, 1063-1068(2009)
3BBX 2958 1387 1185 10 2008-10-21 rRNA Escherichia coli 50S in 50S-tRNA-Hsp15 complex PubMed | Jiang, L et al, JMB 386, 1357-1367(2009)
3E1A 1776 590 385 9 2009-08-18 rRNA Escherichia coli E70S1-30S + APE-tRNAs + mRNA Not in PubMed | Devkota, B et al, To be published
3E1B 3020 974 555 9 2009-08-18 rRNA Escherichia coli E70S1-50S Not in PubMed | Devkota, B et al, To be published
3E1C 1776 622 390 9 2009-08-18 rRNA Escherichia coli E70S2-30S + APE-tRNAs + mRNA Not in PubMed | Devkota, B et al, To be published
3E1D 3020 970 586 9 2009-08-18 rRNA Escherichia coli E70S2-50S Not in PubMed | Devkota, B et al, To be published
3I1M 1533 888 674 3.19 2009-09-01 rRNA Escherichia coli E70S1-30S racheting intermediate PubMed | Zhang, W et al, Science 325, 1014-1017(2009)
3I1N 2972 1717 1356 3.19 2009-09-01 rRNA Escherichia coli E70S1-50S racheting intermediate PubMed | Zhang, W et al, Science 325, 1014-1017(2009)
3I1O 1530 834 647 3.19 2009-09-01 rRNA Escherichia coli E70S2-30S racheting intermediate PubMed | Zhang, W et al, Science 325, 1014-1017(2009)
3I1P 2958 1543 1263 3.19 2009-09-01 rRNA Escherichia coli E70S2-50S racheting intermediate PubMed | Zhang, W et al, Science 325, 1014-1017(2009)
3I1Q 1556 869 666 3.81 2009-09-01 rRNA Escherichia coli E70S1-30S racheting intermediate + P-tRNA ASL + mRNA PubMed | Zhang, W et al, Science 325, 1014-1017(2009)
3I1R 2972 1662 1322 3.81 2009-09-01 rRNA Escherichia coli E70S1-50S racheting intermediate PubMed | Zhang, W et al, Science 325, 1014-1017(2009)
3I1S 1553 829 654 3.81 2009-09-01 rRNA Escherichia coli E70S2-30S racheting intermediate + P-tRNA ASL + mRNA PubMed | Zhang, W et al, Science 325, 1014-1017(2009)
3I1T 2958 1572 1281 3.81 2009-09-01 rRNA Escherichia coli E70S2-50S racheting intermediate PubMed | Zhang, W et al, Science 325, 1014-1017(2009)
3I1Z 1573 856 670 3.71 2009-09-01 rRNA Escherichia coli E70S1-30S racheting intermediate + P-tRNA ASL + mRNA PubMed | Zhang, W et al, Science 325, 1014-1017(2009)
3I20 2972 1678 1323 3.71 2009-09-01 rRNA Escherichia coli E70S1-50S racheting intermediate PubMed | Zhang, W et al, Science 325, 1014-1017(2009)
3I21 1570 849 662 3.71 2009-09-01 rRNA Escherichia coli E70S2-30S racheting intermediate + P-tRNA ASL + mRNA PubMed | Zhang, W et al, Science 325, 1014-1017(2009)
3I22 2958 1517 1241 3.71 2009-09-01 rRNA Escherichia coli E70S2-50S racheting intermediate PubMed | Zhang, W et al, Science 325, 1014-1017(2009)
3KC4 1530 810 n/a 9.6 2010-03-02 rRNA Escherichia coli E70S-30S PubMed | Gumbart, J et al, Structure 17, 1453-1464(2009)
3KCR 3020 1632 n/a 9.6 2010-03-02 rRNA Escherichia coli E70S-50S PubMed | Gumbart, J et al, Structure 17, 1453-1464(2009)
2WWL 1618 855 651 5.8 2010-04-14 rRNA Escherichia coli E70S-30S + P-tRNA + TNAC leader peptide PubMed | Seidelt, B et al, Science 326, 1412-1415(2009)
2WWQ 3106 1647 1299 5.8 2010-04-14 rRNA Escherichia coli E70S-50S + P-tRNA + mRNA PubMed | Seidelt, B et al, Science 326, 1412-1415(2009)
3OR9 1533 869 663 3.3 2010-10-06 rRNA Escherichia coli E70S1-30S + CEM-101 PubMed | Llano-Sotelo, B et al, AAC 54, 4961-4970(2010)
3ORB 2972 1737 1359 3.3 2010-10-06 rRNA Escherichia coli E70S1-50S + CEM-101 PubMed | Llano-Sotelo, B et al, AAC 54, 4961-4970(2010)
3ORA 1530 828 633 3.3 2010-10-06 rRNA Escherichia coli E70S2-30S + CEM-101 PubMed | Llano-Sotelo, B et al, AAC 54, 4961-4970(2010)
1VT2 2958 1540 1187 3.3 2010-10-06 rRNA Escherichia coli E70S2-50S + CEM-101 PubMed | Llano-Sotelo, B et al, AAC 54, 4961-4970(2010)
3OFO 1533 851 644 3.1 2010-10-13 rRNA Escherichia coli E70S1-30S + Erythromycin PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OFP 1530 802 611 3.1 2010-10-13 rRNA Escherichia coli E70S2-30S + Erythromycin PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OFQ 2958 1530 1138 3.1 2010-10-13 rRNA Escherichia coli E70S1-50S + Erythromycin PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OFR 2972 1709 1348 3.1 2010-10-13 rRNA Escherichia coli E70S2-50S + Erythromycin PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OFA 1533 866 661 3.19 2010-10-20 rRNA Escherichia coli E70S1-30S + Chloramphenicol PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OFB 1530 814 640 3.19 2010-10-20 rRNA Escherichia coli E70S2-30S + Chloramphenicol PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OFC 2972 1716 1359 3.19 2010-10-20 rRNA Escherichia coli E70S1-50S + Chloramphenicol PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OFD 2958 1557 1230 3.19 2010-10-20 rRNA Escherichia coli E70S2-50S + Chloramphenicol PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OFX 1533 882 668 3.29 2010-10-20 rRNA Escherichia coli E70S1-30S + Clindamycin PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OFY 1530 818 625 3.29 2010-10-20 rRNA Escherichia coli E70S2-30S + Clindamycin PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OFZ 2972 1710 1340 3.29 2010-10-20 rRNA Escherichia coli E70S1-50S + Clindamycin PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OG0 2958 1540 1220 3.29 2010-10-20 rRNA Escherichia coli E70S2-50S + Clindamycin PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OAQ 1533 893 666 3.25 2010-12-15 rRNA Escherichia coli E70S1-30S + Telithromycin PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OAR 1530 841 634 3.25 2010-12-15 rRNA Escherichia coli E70S2-30S + Telithromycin PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OAS 2958 1553 1230 3.25 2010-12-15 rRNA Escherichia coli E70S1-50S + Telithromycin PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
3OAT 2972 1738 1355 3.25 2010-12-15 rRNA Escherichia coli E70S2-50S + Telithromycin PubMed | Dunkle, JA et al, PNAS 107, 17152-17157(2010)
1S1H 1466 823 626 11.7 2004-05-25 rRNA Thermus thermophilus T30S + Sc eEF2 + Sordarin PubMed | Spahn, CM et al, EMBO J 23, 1008-1019(2004)
1S1I 2916 1723 1316 11.7 2004-05-25 rRNA Haloarcular marismortui H50S PubMed | Spahn, CM et al, EMBO J 23, 1008-1019(2004)
3IZD 138 61 59 6.1 2010-12-01 rRNA Saccharomyces cerevisiae S80S rRNA exapnsion segment ES27L PubMed | Armache, JP et al, PNAS 107, 19748-19753(2010)
3IZE 1582 603 438 6.1 2010-12-01 rRNA Saccharomyces cerevisiae S80S-40S + P-tRNA + mRNA PubMed | Armache, JP et al, PNAS 107, 19748-19753(2010)
3IZF 3436 1524 1231 6.1 2010-12-01 rRNA Saccharomyces cerevisiae S80S-60S PubMed | Armache, JP et al, PNAS 107, 19748-19753(2010)
3O2Z 1789 610 n/a 4 2010-12-15 rRNA Saccharomyeces cerevisiae S80S1-40S PubMed | Ben-Shem, A et al, Science 330, 1203-1209(2010)
3O58 3485 1384 n/a 4 2010-12-15 rRNA Saccharomyeces cerevisiae S80S1-60S PubMed | Ben-Shem, A et al, Science 330, 1203-1209(2010)
3O30 1789 609 n/a 4 2010-12-15 rRNA Saccharomyeces cerevisiae S80S2-40S PubMed | Ben-Shem, A et al, Science 330, 1203-1209(2010)
3O5H 3485 1382 n/a 4 2010-12-15 rRNA Saccharomyeces cerevisiae S80S2-60S PubMed | Ben-Shem, A et al, Science 330, 1203-1209(2010)
3BBN 1478 739 544 9.4 2008-05-13 rRNA Spinacea oleracea 70S chlororibosome-30S modeled based 2AVY PubMed | Sharma, MR et al, PNAS 104, 19315-19320(2007)
3BBO 2952 1137 824 9.4 2008-05-13 rRNA Spinacea oleracea 70S chlororibosome-50S modeled based 2AWB PubMed | Sharma, MR et al, PNAS 104, 19315-19320(2007)
3JYV 1834 670 506 8.9 2009-12-22 rRNA Thermomyces lanuginosus T80S-40S-18S rRNA + PE-tRNA PubMed | Taylor, DJ et al, Structure 17, 1591-1604(2009)
3JYX 3440 1090 684 8.9 2009-12-22 rRNA Thermomyces lanuginosus T80S-60S-26S rRNA PubMed | Taylor, DJ et al, Structure 17, 1591-1604(2009)
3IZ7 1897 638 477 5.5 2010-12-01 rRNA Triticum aestivum T80S-40S + P-tRNA + mRNA PubMed | Armache, JP et al, PNAS 107, 19754-19759(2010)
3IZ9 3702 1650 1317 5.5 2010-12-01 rRNA Triticum aestivum T80S-60S PubMed | Armache, JP et al, PNAS 107, 19754-19759(2010)
1U6B 222 122 107 3.1 2004-08-10 gI RNA Azoarcus sp. Group I RNA with both exons revised PubMed | Adams, PL et al, Nature 430, 45-50(2004)
1T42 222 112 n/a 3.1 2004-06-08 gI RNA Azoarcus sp. Group I RNA with both exons original PubMed | Adams, PL et al, Nature 430, 45-50(2004)
1ZZN 222 112 89 3.37 2005-08-30 gI RNA Azoarcus sp. Group I RNA with box exons PubMed | Stahley, MR et al, Science 309, 1587-1590(2005)
3BO2 222 117 102 3.31 2008-04-01 gI RNA Azoarcus sp. Group I RNA with spliced exons + U1 snRNP protein A PubMed | Lipchock, SV et al, PNAS 105, 5699-5704(2008)
3BO3 222 117 97 3.4 2008-04-01 gI RNA Azoarcus sp. Group I RNA with spliced exons + U1 snRNP protein A PubMed | Lipchock, SV et al, PNAS 105, 5699-5704(2008)
3BO4 222 115 96 3.33 2008-04-01 gI RNA Azoarcus sp. Group I RNA with spliced exons + U1 snRNP protein A PubMed | Lipchock, SV et al, PNAS 105, 5699-5704(2008)
3IIN 222 111 95 4.18 2010-03-09 gI RNA Azoarcus sp. Group I RNA + Hs U1 snRNP A PubMed | Antonioli, AH et al, RNA 16, 762-768(2010)
1Y0Q 233 108 89 3.6 2004-12-21 gI RNA Bacteriophage Twort Group I RNA PubMed | Golden, BL et al, NSMB 12, 82-89(2005)
2RKJ 968 458 318 4.5 2008-01-08 gI RNA Staphylococcus phage Twort Group I RNA + TyrRS PubMed | Paukstelis, PJ et al, Nature 451, 94-97(2008)
1GID 316 170 154 2.5 1996-12-31 gI RNA Tetrahymena thermophila Group I RNA P4-P6 domain PubMed | Cate, JH et al, Science 273, 1678-1685(1996)
1GRZ 494 201 170 5 1999-01-13 gI RNA Tetrahymena thermophila Group I RNA P4-P6 domain PubMed | Golden, BL et al, Science 282, 259-264(1998)
1HR2 315 163 149 2.25 2001-04-12 gI RNA Tetrahymena thermophila Group I RNA P4-P6 domain mutant PubMed | Juneau, K et al, Structure 9, 221-231(2001)
1L8V 314 147 136 2.8 2002-08-23 gI RNA Tetrahymena thermophila Group I RNA P4-P6 domain mutant PubMed | Battle, DJ & Doudna, JA, PNAS 99, 11676-11681(2002)
1X8W 968 448 375 3.8 2004-11-09 gI RNA Tetrahymena thermophila Group I RNA PubMed | Guo, F et al, MC 16, 351-362(2004)
2R8S 159 80 73 1.95 2007-12-04 gI RNA Tetrahymena thermophila group I RNA P4-P6 + Fab PubMed | Ye, JD et al, PNAS 105, 82-87(2008)
3G78 398 210 178 2.8 2010-02-16 gII RNA Oceanobacillus iheyensis Group II RNA revised second PubMed | Wang, J, Acta Cryst D66, 988-1000(2010)
3BWP 349 180 154 3.1 2008-04-15 gII RNA Oceanobacillus iheyensis Group II RNA original PubMed | Toor, N et al, Science 320, 77-82(2008)
3EOG 388 198 160 3.39 2008-10-28 gII RNA Oceanobacillus iheyensis group II RNA + ligated exons PubMed | Toor, N et al, NSMB 15, 1221-1222(2008)
3EOH 381 196 164 3.12 2008-10-28 gII RNA Oceanobacillus iheyensis group II RNA + ligated exons PubMed | Toor, N et al, NSMB 15, 1221-1222(2008)
3IGI 395 215 179 3.12 2009-12-22 gII RNA Oceanobacillus iheyensis group II RNA + ligated exons PubMed | Toor, N et al, RNA 16, 57-69(2010)
1KXK 70 30 28 3 2002-03-22 gII RNA Saccharomyces cerevisiae Group II RNA ai5g partial PubMed | Zhang, L et al, Science 295, 2084-2088(2002)
1U9S 155 93 73 2.9 2004-10-26 RNase P RNA Thermus thermophilus RNase P RNA (Type A) S-domain PubMed | Krasilnikov, AS et al, Science 306, 104-107(2004)
1NBS 270 143 114 3.15 2003-02-18 RNase P RNA Bacillus subtilis RNase P RNA (Type B) S-domain PubMed | Krasilnikov, AS et al, Nature 421, 760-764(2003)
2A64 298 135 115 3.3 2005-09-20 RNase P RNA Bacillus stearothermophilus RNase P RNA (Type B) PubMed | Kazantsev, AV et al, PNAS 102, 13392-13397(2005)
3DHS 215 97 80 3.6 2009-01-27 RNase P RNA Bacillus stearothermophilus RNase P RNA (Type B) C-domain PubMed | Kazantsev, AV et al, RNA 15, 266-276(2009)
2A2E 266 115 100 3.85 2005-09-06 RNase P RNA Thermotoga maritima RNase P RNA (Type A) PubMed | Torres-Larios, A et al, Nature 437, 584-587(2005)
3Q1Q 424 202 n/a 3.8 2011-03-09 RNase P RNA Thermotoga maritima RNase P RNA + Phe-tRNA PubMed | Reiter, NJ et al, Nature 468, 784-789(2010)
3Q1R 424 199 n/a 4.21 2011-03-09 RNase P RNA Thermotoga maritima RNase P RNA + Phe-tRNA PubMed | Reiter, NJ et al, Nature 468, 784-789(2010)
3IAB 46 14 13 2.7 2010-01-26 RNase MRP RNA Saccharomyces cerevisiae RNase MRP RNA P3 domain derivative PubMed | Perederina, A et al, EMBO J 29, 761-769(2010)
3D2G 154 82 70 2.25 2008-07-01 Riboswitch Arabidopsis thaliana TPP riboswitch + TPP PubMed | Thore, S et al, JACS 130, 8116-8117(2008)
3D2V 154 85 70 2 2008-07-01 Riboswitch Arabidopsis thaliana TPP riboswitch + Pyrithiamine pyrophosphate PubMed | Thore, S et al, JACS 130, 8116-8117(2008)
3D2X 154 82 70 2.5 2008-07-01 Riboswitch Arabidopsis thaliana TPP riboswitch + Oxythiamine pyrophosphate PubMed | Thore, S et al, JACS 130, 8116-8117(2008)
2CKY 154 82 68 2.9 2006-05-08 Riboswitch Arabidopsis thaliana TPP riboswitch + TPP PubMed | Thore, S et al, Science 312, 1208-1211(2006)
2NZ4 602 307 238 2.5 2007-01-16 Riboswitch Bacillus anthracis glmS riboswitch PubMed | Cochrane, JC et al, CB 14, 97-105(2007)
3G8S 602 302 212 3.1 2009-11-03 Riboswitch Bacillus anthracis glmS riboswtich (pre-cleaved) PubMed | Cochrane, JC et al, Biochem 48, 3239-3246(2009)
3G8T 615 280 218 3 2009-11-03 Riboswitch Bacillus anthracis glmS riboswtich (pre-cleaved) PubMed | Cochrane, JC et al, Biochem 48, 3239-3246(2009)
3G96 604 298 233 3.01 2009-11-03 Riboswitch Bacillus anthracis glmS riboswtich (pre-cleaved) PubMed | Cochrane, JC et al, Biochem 48, 3239-3246(2009)
3G9C 605 297 223 2.9 2009-11-03 Riboswitch Bacillus anthracis glmS riboswtich (pre-cleaved) PubMed | Cochrane, JC et al, Biochem 48, 3239-3246(2009)
3L3C 604 296 232 2.85 2009-12-29 Riboswitch Bacillus anthracis glmS riboswtich (pre-cleaved) PubMed | Cochrane, JC et al, Biochem 48, 3239-3246(2009)
2QBZ 153 86 76 2.6 2007-09-18 Riboswitch Bacillus subtilis M-Box riboswitch PubMed | Dann, CE et al, Cell 130, 878-892(2007)
3LA5 71 38 33 1.7 2010-01-26 Riboswitch Bacillus subtilis A-riboswitch PubMed | Dixon, N et al, PNAS 107, 2830-2835(2010)
3IVN 138 72 59 2.8 2010-01-19 Riboswitch Bacillus subtilis A-riboswitch mutant U65C PubMed | Delfosse, V et al, NAR 38, 2057-2068(2010)
3FO4 63 34 32 1.9 2009-06-23 Riboswitch Bacillus subtilis G-riboswitch C74U mutant + 6-Cl-G PubMed | Gilbert, SD et al, Structure 17, 857-868(2009)
3FO6 67 36 34 1.9 2009-06-23 Riboswitch Bacillus subtilis G-riboswitch + 6-OMe-G PubMed | Gilbert, SD et al, Structure 17, 857-868(2009)
3G4M 67 35 32 2.4 2009-06-23 Riboswitch Bacillus subtilis G-riboswitch + 2-Aminopurine PubMed | Gilbert, SD et al, Structure 17, 857-868(2009)
3GAO 67 36 34 1.9 2009-06-23 Riboswitch Bacillus subtilis G-riboswitch + Xanthine PubMed | Gilbert, SD et al, Structure 17, 857-868(2009)
3GER 67 36 34 1.7 2009-06-23 Riboswitch Bacillus subtilis G-riboswitch + 6-Cl-G PubMed | Gilbert, SD et al, Structure 17, 857-868(2009)
3GES 67 35 33 2.15 2009-06-23 Riboswitch Bacillus subtilis G-riboswitch C74U mutant + 6-OMe-G PubMed | Gilbert, SD et al, Structure 17, 857-868(2009)
3GOG 65 35 34 2.1 2009-06-23 Riboswitch Bacillus subtilis G-riboswitch A21G,U75C mutant + 6-Cl-G PubMed | Gilbert, SD et al, Structure 17, 857-868(2009)
3GOT 67 34 32 1.95 2009-06-23 Riboswitch Bacillus subtilis G-riboswitch C74U mutant + 2-F-A PubMed | Gilbert, SD et al, Structure 17, 857-868(2009)
2EES 67 34 33 1.75 2007-11-13 Riboswitch Bacillus subtilus G-riboswitch with A21U and U75A PubMed | Gilbert, SD et al, Biochem 46, 13297-13309(2007)
2EET 67 36 34 1.95 2007-11-13 Riboswitch Bacillus subtilus G-riboswitch with A21G and U75C PubMed | Gilbert, SD et al, Biochem 46, 13297-13309(2007)
2EEU 67 35 33 1.95 2007-11-13 Riboswitch Bacillus subtilus G-riboswitch with U22A and A52U PubMed | Gilbert, SD et al, Biochem 46, 13297-13309(2007)
2EEV 67 36 34 1.95 2007-11-13 Riboswitch Bacillus subtilus G-riboswitch with U22C and A52G PubMed | Gilbert, SD et al, Biochem 46, 13297-13309(2007)
2EEW 67 35 33 2.25 2007-11-13 Riboswitch Bacillus subtilus G-riboswitch with U47C PubMed | Gilbert, SD et al, Biochem 46, 13297-13309(2007)
2G9C 67 36 34 1.7 2006-11-21 Riboswitch Bacillus subtilus G-riboswitch + G PubMed | Gilbert, SD et al, JACS 128, 14214-14215(2006)
2B57 65 34 31 2.15 2006-05-23 Riboswitch Bacillus subtilus G-riboswitch with C74U + 6AP PubMed | Gilbert, SD et al, JMB 359, 754-768(2006)
1Y27 68 37 33 2.4 2004-12-28 Riboswitch Bacillus subtilus G-riboswitch + G PubMed | Serganov, A et al, CB 11, 1729-1741(2004)
1U8D 67 36 34 1.95 2004-11-23 Riboswitch Bacillus subtilus G-riboswitch + Hypoxanthine PubMed | Batey, RT et al, Nature 432, 411-415(2004)
3FU2 93 59 47 2.85 2009-03-03 Riboswitch Bacillus subtilis preQ1 riboswitch (class I) PubMed | Klein, DJ et al, NSMB 16, 343-344(2009)
3FU4 29 19 n/a 2.2 2009-03-03 Riboswtich Bacillus subtilus preQ1 riboswtich (class I) PubMed | Klein, DJ et al, NSMB 16, 343-344(2009)
3K1V 29 19 13 2.2 2009-03-03 Riboswtich Bacillus subtilus preQ1 riboswtich (class I) PubMed | Klein, DJ et al, NSMB 16, 343-344(2009)
3NPB 119 55 46 3.02 2010-11-03 Riboswitch Bacillus subtilis yitJ S-box (SAM-I) riboswitch PubMed | Lu, C et al, JMB 404, 803-818(2010)
3E5C 54 25 21 2.25 2008-10-07 Riboswitch Enterococcus faecalis SMA-III riboswitch + SAM PubMed | Lu, C et al, NSMB 15, 1076-1083(2008)
3E5E 54 25 20 2.9 2098-08-07 Riboswitch Enterococcus faecalis SAM-III riboswitch PubMed | Lu, C et al, NSMB 15, 1076-1083(2008)
3E5F 54 25 21 2.7 2098-08-07 Riboswitch Enterococcus faecalis SAM-III riboswitch PubMed | Lu, C et al, NSMB 15, 1076-1083(2008)
2QWY 156 84 65 2.8 2008-01-22 Riboswitch Environmental sequence SAM-II riboswitch + SAM PubMed | Gilbert, SD et al, NSMB 15, 177-182(2008)
2GDI 160 86 71 2.05 2006-07-04 Riboswitch Escherichia coli Th-box riboswitch + TPP PubMed | Serganov, A et al, Nature 441, 1167-1171(2006)
2HOJ 75 39 33 2.5 2006-09-19 Riboswitch Escherichia coli Thi-box riboswitch + TPP + Mn2+ PubMed | Edwards, TE et al, Structure 14, 1459-1468(2006)
2HOK 75 41 33 3.2 2006-09-19 Riboswitch Escherichia coli Thi-box riboswitch + TPP PubMed | Edwards, TE et al, Structure 14, 1459-1468(2006)
2HOL 75 40 33 2.9 2006-09-19 Riboswitch Escherichia coli Thi-box riboswitch + TPP + Ba2+ PubMed | Edwards, TE et al, Structure 14, 1459-1468(2006)
2HOM 76 41 31 2.89 2006-09-19 Riboswitch Escherichia coli Thi-box riboswitch + TMP PubMed | Edwards, TE et al, Structure 14, 1459-1468(2006)
2HOO 74 39 33 3 2006-09-19 Riboswitch Escherichia coli Thi-box riboswitch + Benfothiamine PubMed | Edwards, TE et al, Structure 14, 1459-1468(2006)
2HOP 69 32 23 3.3 2006-09-19 Riboswitch Escherichia coli Thi-box riboswitch + Pyrithiamime PubMed | Edwards, TE et al, Structure 14, 1459-1468(2006)
3K0J 166 82 68 3.1 2009-12-22 Riboswitch Escherichia coli Thi-box riboswitch + TPP + U1A PubMed | Kulshina, N et al, RNA 16, 186-196(2010)
3F2Q 109 53 48 2.95 2009-01-27 Riboswitch Fusobacterium nucleatum FMN riboswitch + FMN PubMed | Serganov, A et al, Nature 458, 233-237(2009)
3F2T 108 53 46 3 2009-01-27 Riboswitch Fusobacterium nucleatum FMN riboswitch + FMN + Iridium hexamine PubMed | Serganov, A et al, Nature 458, 233-237(2009)
3F2W 109 54 48 3.45 2009-01-27 Riboswitch Fusobacterium nucleatum FMN riboswitch + FMN + Ba2+ PubMed | Serganov, A et al, Nature 458, 233-237(2009)
3F2X 109 54 47 3.11 2009-01-27 Riboswitch Fusobacterium nucleatum FMN riboswitch + FMN + Cs+ PubMed | Serganov, A et al, Nature 458, 233-237(2009)
3F2Y 109 53 49 3.2 2009-01-27 Riboswitch Fusobacterium nucleatum FMN riboswitch + FMN + Mn2+ PubMed | Serganov, A et al, Nature 458, 233-237(2009)
3F30 109 53 47 3.15 2009-01-27 Riboswitch Fusobacterium nucleatum FMN riboswitch + FMN PubMed | Serganov, A et al, Nature 458, 233-237(2009)
3F4E 109 54 50 3.05 2009-01-27 Riboswitch Fusobacterium nucleatum FMN riboswitch + FMN PubMed | Serganov, A et al, Nature 458, 233-237(2009)
3F4G 109 53 49 3.01 2009-01-27 Riboswitch Fusobacterium nucleatum FMN riboswitch + FMN PubMed | Serganov, A et al, Nature 458, 233-237(2009)
3F4H 109 53 49 3 2009-01-27 Riboswitch Fusobacterium nucleatum FMN riboswitch + FMN PubMed | Serganov, A et al, Nature 458, 233-237(2009)
3DS7 134 69 66 1.85 2009-01-17 Riboswitch Mesoplasma florum dG riboswitch PubMed | Edwards, AL et al, JMB 385, 938-948(2009)
3NPN 50 21 18 2.79 2010-10-06 Riboswitch Ralstonia solanacearum SAH riboswitch PubMed | Edwards, AL et al, RNA 16, 2144-2155(2010)
3NPQ 150 67 53 2.18 2010-10-06 Riboswitch Ralstonia solanacearum SAH riboswitch PubMed | Edwards, AL et al, RNA 16, 2144-2155(2010)
3DIG 174 89 81 2.8 2008-09-16 Riboswitch Thermotoga maritima MSB8 Lysine riboswitch + Lysine PubMed | Serganov, A et al, Nature 455, 1263-1267(2008)
3DIL 174 90 82 1.9 2008-09-16 Riboswitch Thermotoga maritima MSB8 Lysine riboswitch + Lysine PubMed | Serganov, A et al, Nature 455, 1263-1267(2008)
3DIM 174 91 80 2.9 2008-09-16 Riboswitch Thermotoga maritima MSB8 Lysine riboswitch + Lysine + Cs+ PubMed | Serganov, A et al, Nature 455, 1263-1267(2008)
3DIO 174 89 79 2.4 2008-09-16 Riboswitch Thermotoga maritima MSB8 Lysine riboswitch + Lysine + Iridium hexamine PubMed | Serganov, A et al, Nature 455, 1263-1267(2008)
3DIQ 174 91 81 2.7 2008-09-16 Riboswitch Thermotoga maritima MSB8 Lysine riboswitch + Homoarginine PubMed | Serganov, A et al, Nature 455, 1263-1267(2008)
3DIR 174 88 81 2.9 2008-09-16 Riboswitch Thermotoga maritima MSB8 Lysine riboswitch + Lysine PubMed | Serganov, A et al, Nature 455, 1263-1267(2008)
3DIS 174 90 80 3.1 2008-09-16 Riboswitch Thermotoga maritima MSB8 Lysine riboswitch in free form PubMed | Serganov, A et al, Nature 455, 1263-1267(2008)
3DIX 174 91 81 2.9 2008-09-16 Riboswitch Thermotoga maritima MSB8 Lysine riboswitch + Lysine + K+ PubMed | Serganov, A et al, Nature 455, 1263-1267(2008)
3DIY 174 93 79 2.71 2008-09-16 Riboswitch Thermotoga maritima MSB8 Lysine riboswitch + Lysine + Mn2+ PubMed | Serganov, A et al, Nature 455, 1263-1267(2008)
3DIZ 174 90 79 2.85 2008-09-16 Riboswitch Thermotoga maritima MSB8 Lysine riboswitch + Lysine + no Mg2+ PubMed | Serganov, A et al, Nature 455, 1263-1267(2008)
3DJ0 174 91 81 2.5 2008-09-16 Riboswitch Thermotoga maritima MSB8 Lysine riboswitch + L-4-Oxalysine PubMed | Serganov, A et al, Nature 455, 1263-1267(2008)
3DJ2 174 90 81 2.5 2008-09-16 Riboswitch Thermotoga maritima MSB8 Lysine riboswitch + Lysine + Tl+ PubMed | Serganov, A et al, Nature 455, 1263-1267(2008)
3D0U 161 80 77 2.8 2008-07-01 Riboswitch Thermotoga maritima MSB8 Lysine Riboswitch + Lysine PubMed | Garst, AD et al, JBC 283, 22347-22351(2008)
3D0X 161 85 72 2.95 2008-07-01 Riboswitch Thermotoga maritima MSB8 Lysine riboswitch + Lysine PubMed | Garst, AD et al, JBC 283, 22347-22351(2008)
2GIS 94 48 44 2.9 2006-07-04 Riboswitch Thermoanaerobacter tengcongensis SAM-I riboswitch + SAM PubMed | Montange, RK & Batey, RT, Nature 441, 1172-1175(2006)
2Z74 141 76 60 2.2 2007-09-04 Riboswitch Thermoanaerobacter tengcongensis glmS riboswitch + Glucosamine-6-phosphate PubMed | Klein, DJ et al, JMB 373, 178-189(2007)
2Z75 141 75 62 1.7 2007-09-04 Riboswitch Thermoanaerobacter tengcongensis glmS riboswitch + Glucosamine-6-phosphate PubMed | Klein, DJ et al, JMB 373, 178-189(2007)
2GCS 142 76 61 2.1 2006-09-26 Riboswitch Thermoanaerobacter tengcongensis glmS riboswitch pre-cleavage state PubMed | Klein, DJ etal, Science 313, 1752-1756(2006)
2GCV 141 75 60 2.1 2006-09-26 Riboswitch Thermoanaerobacter tengcongensis glmS riboswitch post-cleavage state PubMed | Klein, DJ etal, Science 313, 1752-1756(2006)
2H0S 143 77 59 2.35 2006-09-26 Riboswitch Thermoanaerobacter tengcongensis glmS riboswitch pre-cleavage state PubMed | Klein, DJ et al, Science 313, 1752-1756(2006)
2H0W 141 73 60 2.4 2006-09-26 Riboswitch Thermoanaerobacter tengcongensis glmS riboswitch post-cleavage state PubMed | Klein, DJ et al, Science 313, 1752-1756(2006)
2H0X 142 76 61 2.3 2006-09-26 Riboswitch Thermoanaerobacter tengcongensis glmS riboswitch pre-cleavage state PubMed | Klein, DJ et al, Science 313, 1752-1756(2006)
2H0Z 142 75 58 2.7 2006-09-26 Riboswitch Thermoanaerobacter tengcongensis glmS riboswitch pre-cleavage state + Glucose-6-Phosphate PubMed | Klein, DJ et al, Science 313, 1752-1756(2006)
2HO6 141 75 64 2.8 2006-09-26 Riboswitch Thermoanaerobacter tengcongensis glmS riboswitch post-cleavage state PubMed | Klein, DJ et al, Science 313, 1752-1756(2006)
2HO7 141 78 64 2.9 2006-09-26 Riboswitch Thermoanaerobacter tengcongensis glmS riboswitch pre-cleavage state PubMed | Klein, DJ et al, Science 313, 1752-1756(2006)
3B4A 142 75 59 2.7 2007-12-11 Riboswitch Thermoanaerobacter tengcongensis glmS riboswitch with G40A + Glucosamine-6-phosphate PubMed | Klein, DJ et al, JACS 129, 14858-14859(2007)
3B4B 141 76 61 2.7 2007-12-11 Riboswitch Thermoanaerobacter tengcongensis glmS riboswitch with G40A + Glucosamine-6-phosphate PubMed | Klein, DJ et al, JACS 129, 14858-14859(2007)
3B4C 139 75 55 3 2007-12-11 Riboswitch Thermoanaerobacter tengcongensis glmS riboswitch with G40A + Glucosamine-6-phosphate PubMed | Klein, DJ et al, JACS 129, 14858-14859(2007)
3GCA 33 21 15 2.75 2009-03-03 Riboswitch Thermoanaerobacter tencongensis preQ1 riboswitch PubMed | Spitale, RC et al, JBC 284, 11012-11016(2009)
3GX2 94 45 41 2.9 2010-01-12 Riboswitch Thermoanaerobacter tencongensis SAM-I riboswitch variant with A94G/U34C + SFG PubMed | Montange, RK et al, JMB 396, 761-772(2010)
3GX3 94 48 40 2.7 2010-01-12 Riboswitch Thermoanaerobacter tencongensis SAM-I riboswitch variant with A94G/U34C + SAH PubMed | Montange, RK et al, JMB 396, 761-772(2010)
3GX5 94 49 43 2.4 2010-01-12 Riboswitch Thermoanaerobacter tencongensis SAM-I riboswitch variant with A94G/U34C + SAM PubMed | Montange, RK et al, JMB 396, 761-772(2010)
3GX6 94 46 42 2.8 2010-01-12 Riboswitch Thermoanaerobacter tencongensis SAM-I riboswitch variant with A94G/U34C + SAM PubMed | Montange, RK et al, JMB 396, 761-772(2010)
3GX7 94 45 40 2.95 2010-01-12 Riboswitch Thermoanaerobacter tencongensis SAM-I riboswitch variant with A94G/U34/A6C/U7G/A87C/U88G + SAM PubMed | Montange, RK et al, JMB 396, 761-772(2010)
3IQN 94 48 41 2.7 2010-08-04 Riboswitch Thermoanaerobacter tencongensis SAM-1 riboswitch native PubMed | Stoddard, CD et al, Structure 18, 787-797(2010)
3IQP 94 47 40 2.9 2010-08-04 Riboswitch Thermoanaerobacter tencongensis SAM-1 riboswitch with A94G PubMed | Stoddard, CD et al, Structure 18, 787-797(2010)
3IQR 94 48 42 2.55 2010-08-04 Riboswitch Thermoanaerobacter tencongensis SAM-1 riboswitch with A94G + SAM PubMed | Stoddard, CD et al, Structure 18, 787-797(2010)
3IRW 91 37 33 2.7 2009-11-10 Riboswitch Vibrio cholerae c-di-GMP riboswitch PubMed | Smith, KD et al, NSMB 16, 1218-1223(2009)
3IWN 186 75 55 3.2 2009-11-10 Riboswitch Vibrio cholerae c-di-GMP riboswitch PubMed | Kulshina, N et al, NSMB 16, 1212-1217(2009)
3MUM 92 42 35 2.9 2010-08-25 Riboswitch Vibrio cholerae c-di-GMP riboswitch with G20A + c-di-GMP PubMed | Smith, KD et al, Biochem 49, 7351-7359(2010)
3MUR 92 41 38 3 2010-08-25 Riboswitch Vibrio cholerae c-di-GMP riboswitch with G92U + c-di-GMP PubMed | Smith, KD et al, Biochem 49, 7351-7359(2010)
3MUT 92 39 33 3 2010-08-25 Riboswitch Vibrio cholerae c-di-GMP riboswitch with G20A and G92U + c-di-GMP PubMed | Smith, KD et al, Biochem 49, 7351-7359(2010)
3MUV 91 42 35 3.2 2010-08-25 Riboswitch Vibrio cholerae c-di-GMP riboswitch with G20A and G92U + c-di-AMP PubMed | Smith, KD et al, Biochem 49, 7351-7359(2010)
3MXH 92 43 37 2.3 2010-08-25 Riboswitch Vibrio cholerae c-di-GMP riboswitch native PubMed | Smith, KD et al, Biochem 49, 7351-7359(2010)
1Y26 71 36 33 2.1 2004-12-28 Riboswitch Vibrio vulnificus A-riboswitch + A PubMed | Serganov, A et al, CB 11, 1729-1741(2004)
3OWI 176 92 78 2.85 2010-12-29 Riboswitch Vibrio cholerae Glycine riboswitch + Glycine PubMed | Huang, L et al, MC 40, 774-786(2010)
3OWW 175 93 78 2.8 2010-12-29 Riboswitch Vibrio cholerae Glycine riboswitch + Glycine PubMed | Huang, L et al, MC 40, 774-786(2010)
3OWZ 171 90 79 2.95 2010-12-29 Riboswitch Vibrio cholerae Glycine riboswitch, Ir-soaked PubMed | Huang, L et al, MC 40, 774-786(2010)
3OX0 176 89 81 3.05 2010-12-29 Riboswitch Vibrio cholerae Glycine riboswitch unbound state PubMed | Huang, L et al, MC 40, 774-786(2010)
3OXB 175 86 75 2.95 2010-12-29 Riboswitch Vibrio cholerae Glycine riboswitch with a single mutation PubMed | Huang, L et al, MC 40, 774-786(2010)
3OXD 175 90 78 3 2010-12-29 Riboswitch Vibrio cholerae Glycine riboswitch with two mutations PubMed | Huang, L et al, MC 40, 774-786(2010)
3OXE 176 93 79 2.9 2010-12-29 Riboswitch Vibrio cholerae Glycine riboswitch, Mn-soaked PubMed | Huang, L et al, MC 40, 774-786(2010)
3OXJ 175 90 79 3.2 2010-12-29 Riboswitch Vibrio cholerae Glycine riboswitch, Ba-soaked PubMed | Huang, L et al, MC 40, 774-786(2010)
3OXM 176 93 79 2.95 2010-12-29 Riboswitch Vibrio cholerae Glycine riboswitch, Tl-soaked PubMed | Huang, L et al, MC 40, 774-786(2010)
2CT8 148 64 52 2.7 2005-09-20 tRNA Aquifex aeolicus Met-tRNA + MetRS PubMed | Nakashini, K et al, NSMB 12, 931-932(2005)
2CSX 150 61 53 2.7 2005-09-20 tRNA Aquifex aeolicus Met-tRNA + MetRS PubMed | Nakanishi, K et al, NSMB 12, 931-932(2005)
2DU3 71 30 24 2.6 2007-03-13 tRNA Archaeoglobus fulgidus Cys-tRNA + O-phospho-SerRS PubMed | Fukunaga, R et al, NSMB, 14, 272-279(2007)
2DU4 71 30 24 2.8 2007-03-13 tRNA Archaeoglobus fulgidus Cys-tRNA + O-phospho-SerRS PubMed | Fukunaga, R et al, NSMB, 14, 272-279(2007)
2DU5 71 27 24 3.2 2007-03-13 tRNA Archaeoglobus fulgidus Cys-tRNA + O-phospho-SerRS PubMed | Fukunaga, R et al, NSMB, 14, 272-279(2007)
2DU6 71 24 24 3.3 2007-03-13 tRNA Archaeoglobus fulgidus Cys-tRNA + O-phospho-SerRS PubMed | Fukunaga, R et al, NSMB, 14, 272-279(2007)
2FK6 53 25 19 2.9 2006-03-21 tRNA Bacillus subtilis Thr-tRNA + RNase Z PubMed | Li de la Sierra-Gallay, I et al, NSMB 13, 376-377(2006)
3A2K 154 52 52 3.65 2009-10-20 tRNA Bacillus subtilus Ile2-tRNA + TilS PubMed | Nakanishi, K et al, Nature 461, 1144-1148(2009)
2AZX 144 60 54 2.8 2006-08-01 tRNA Bos taurus Trp-tRNA + Hs-TrpRS PubMed | Yang, XL et al, EMBO J 25, 2919-2929(2006)
2AKE 72 26 20 3.1 2006-07-11 tRNA Bos taurus Trp-tRNA + Hs-TrpRS PubMed | Shen, N et al, NAR 34, 3246-3258(2006)
2DR2 75 26 20 3 2006-07-11 tRNA Bos taurus Trp-tRNA + Hs-TrpRS PubMed | Shen, N et al, NAR 34, 3246-3258(2006)
2ZNI 144 55 49 3.1 2008-12-30 tRNA Desulfitobacterium hafniense Pyl-tRNA + PylRS PubMed | Nozawa, K et al, Nature 457, 1163-1167(2009)
1ZO1 76 30 30 13.8 2005-06-14 tRNA Escherichia coli fMet-tRNA + IF1 + IF2 PubMed | Allen, GS et al, Cell 121, 703-712(2005)
1ZO3 152 56 60 13.8 2005-06-14 tRNA Escherichia coli fMet-tRNA + IF1 + IF2 PubMed | Allen, GS et al, Cell 121, 703-712(2005)
3CW5 77 33 25 3.1 2008-09-02 tRNA Escherichia coli fMet-tRNA PubMed | Barraud, P et al, NAR 36, 4894-4901(2008)
3CW6 77 32 24 3.3 2008-09-02 tRNA Escherichia coli fMet-tRNA PubMed | Barraud, P et al, NAR 36, 4894-4901(2008)
2FMT 154 61 44 2.8 1999-07-29 tRNA Escherichia coli fMet-tRNA + fMetRS PubMed | Schmitt, E et al, EMBO J 17, 6819-6826(1998)
1EFW 144 66 49 3 2000-06-19 tRNA Escherichia coli Asp-tRNA + Tt-AspRS PubMed | Briand, C et al, JMB 299, 1051-1060(2000)
1C0A 76 33 25 2.4 1999-11-23 tRNA Escherichia coli Asp-tRNA + AspRS PubMed | Eiler, S et al, EMBO J 19, 6532-6541(1999)
1U0B 74 33 30 2.3 2004-11-23 tRNA Escherichia coli Cys-tRNA + CysRS PubMed | Hauenstein, S et al, NSMB 11, 1134-1141(2004)
1B23 74 31 23 2.6 1998-12-07 tRNA Escherichia coli Cys-tRNA + Ta EF-TU:GTP PubMed | Nissen, P et al, Structure 7, 143-156(1999)
1QRS 74 33 29 2.6 1996-12-07 tRNA Escherichia coli Gln-tRNA + GlnRS PubMed | Arnez, JG et al, Biochem 35, 14725-14733(1996)
1QRT 74 33 30 2.7 1996-12-07 tRNA Escherichia coli Gln-tRNA + GlnRS PubMed | Arnez, JG et al, Biochem 35, 14725-14733(1996)
1QRU 74 32 29 3 1996-12-07 tRNA Escherichia coli Gln-tRNA + GlnRS PubMed | Arnez, JG et al, Biochem 35, 14725-14733(1996)
1QTQ 74 32 30 2.25 1998-05-27 tRNA Escherichia coli Gln2-tRNA + GlnRS PubMed | Rath, VL et al, Structure 6, 439-449(1998)
1GTR 74 32 30 2.5 1995-02-07 tRNA Escherichia coli Gln-tRNA + GlnRS PubMed | Rould, MA et al, Nature 352, 213-218(1991)
1EUQ 72 31 24 3.1 2000-06-04 tRNA Escherichia coli Gln-tRNA + GlnRS PubMed | Sherlin, LD et al, JMB 299, 431-446(2000)
1EUY 73 32 28 2.6 2000-06-04 tRNA Escherichia coli Gln-tRNA + GlnRS PubMed | Sherlin LD et al, JMB 299, 431-446(2000)
1GTS 74 31 29 2.8 1995-02-07 tRNA Escherichia coli Gln-tRNA + GlnRS PubMed | Perona, JJ et al, Biochem 32, 8758-8771(1993)
1O0B 74 31 29 2.7 2003-04-15 tRNA Escherichia coli Gln-tRNA + GlnRS PubMed | Bullock, TL et al, JMB 328, 395-408(2003)
1O0C 74 33 n/a 2.7 2003-04-15 tRNA Escherichia coli Gln-tRNA + GlnRS PubMed | Bullock, TL et al, JMB 328, 395-408(2003)
1ZJW 74 32 25 2.5 2005-06-07 tRNA Escherichia coli Gln-tRNA + GlnRS PubMed | Gruic-Sovulj, I et al, JBC 280, 23978-23986(2005)
2RD2 74 30 25 2.6 2008-01-15 tRNA Escherichia coli Gln-tRNA U1G mutant PubMed | Bullock, TL et al, PNAS 105, 7423-7433(2008)
2RE8 75 31 27 2.6 2008-01-15 tRNA Escherichia coli Gln-tRNA + GlnRS C229R mutant PubMed | Bullock, TL et al, PNAS 105, 7428-7433(2008)
2DER 145 65 53 3.1 2006-08-15 tRNA Escherichia coli Glu-tRNA + MnmA PubMed | Numata, T et al, Nature 442, 419-424(2006)
2DET 70 30 24 3.4 2006-08-15 tRNA Escherichia coli Glu-tRNA + MnmA PubMed | Numata, T et al, Nature 442, 419-424(2006)
2DEU 148 45 46 3.4 2006-08-15 tRNA Escherichia coli Glu-tRNA + MnmA PubMed | Numata, T et al, Nature 442, 419-424(2006)
2NQP 65 28 21 3.5 2007-05-15 tRNA Escherichia coli Leu-tRNA + PsiUS TruA PubMed | Hur, S et al, Mol Cell 26, 189-203(2007)
2NR0 274 109 99 3.9 2007-05-15 tRNA Escherichia coli Leu-tRNA + PsiUS TruA PubMed | Hur, S et al, Mol Cell 26, 189-203(2007)
2NRE 56 23 18 4 2007-05-15 tRNA Escherichia coli Leu-tRNA + PsiUS TruA PubMed | Hur, S et al, Mol Cell 26, 189-203(2007)
1MJ1 152 64 45 13 2002-11-01 tRNA Escherichia coli Phe-tRNA + EF-Tu + GTP PubMed | Stark, H et al, NSB 9, 849-854(2002)
1ML5 82 36 24 14 2003-01-14 tRNA Escherichia coli Phe-tRNA + E70S + mRNA + RF2 PubMed | Klaholz, BP et al, Nature 421, 90-94(2003)
3FOZ 143 67 56 2.5 2009-01-20 tRNA Escherichia coli Phe-tRNA + IsopentenylRS PubMed | Seif, E et al, JBC 284, 6600-6604(2009)
2ZM5 143 66 57 2.55 2009-04-14 tRNA Escherichia coli Phe-tRNA + MiaA + DMASPP PubMed | Chimnaronk, S et al, Biochem 48, 5057-5065(2009)
2ZXU 143 67 56 2.75 2009-05-26 tRNA Escherichia coli Phe-tRNA + MiaA + DMASPP PubMed | Chimnaronk, S et al, Biochem 48, 5057-5065(2009)
3L0U 73 31 29 3 2010-03-16 tRNA Escherichia coli Phe-tRNA WT PubMed | Byrne, RT et al, NAR 38, 4154-4162(2010)
1QF6 76 33 28 2.9 1999-05-06 tRNA Escherichia coli Thr-tRNA + ThrRS PubMed | Sankaranarayanan, R et al, Cell 97, 371-381(1999)
1FIR 75 35 21 3.3 2001-01-17 tRNA HIV-1 Lys3-tRNA (RT primer) PubMed | Benas, P et al, RNA 6, 1347-1355(2000)
3A3A 86 32 34 3.1 2009-08-11 tRNA Homo sapiens Sec-tRNA PubMed | Itoh, Y et al, NAR 37, 6259-6268(2009)
3HL2 82 34 31 2.81 2009-10-06 tRNA Homo sapiens Sec-tRNA + SecRS PubMed | Palioura, S et al, Science 325, 321-325(2009)
3AM1 81 36 34 2.4 2010-12-29 tRNA Synthetic Sec-tRNA with no ASL + PSTK PubMed | Sherrer, RL et al, NAR 39, 1034-1041(2010)
2ZZM 84 36 27 2.65 2009-09-15 tRNA Methanocaldococcus jannaschii Leu-tRNA + LeuRS PubMed | Goto-Ito, S et al, NSMB 16, 1109-1115(2009)
2ZZN 142 61 54 2.95 2009-09-15 tRNA Methanocaldococcus jannaschii Cys-tRNA + aTrm5 PubMed | Goto-Ito, S et al, NSMB 16, 1109-1115(2009)
1J1U 74 33 31 1.95 2003-06-03 tRNA Methanocaldococcus jannaschii Tyr-tRNA + TyrRS + Tyrosine PubMed | Kobayashi, T et al, NSB 10, 425-432(2003)
3ADB 184 78 72 2.8 2010-07-28 tRNA Methanopyrus kandleri Sec-tRNA + Mj PSTK + AMPPNP PubMed | Chiba, S et al, MC 39, 410-420(2010)
3ADC 180 76 70 2.9 2010-07-28 tRNA Methanopyrus kandleri Sec-tRNA + Mj PSTK + AMPPNP PubMed | Chiba, S et al, MC 39, 410-420(2010)
3ADD 176 79 73 2.4 2010-07-28 tRNA Methanopyrus kandleri Sec-tRNA + Mj PSTK + AMPPNP PubMed | Chiba, S et al, MC 39, 410-420(2010)
2D6F 146 61 48 3.15 2006-07-11 tRNA Methanothermobacter thermautotrophicus Gln-tRNA + GlnRS PubMed | Oshikane, H et al, Science 312, 1950-1954(2006)
2ZUE 77 32 29 2 2009-08-18 tRNA Pyrococcus horikoshii Arg-tRNA + ArgRS PubMed | Konno, M et al, FEBS J 276, 4763-4779(2009)
2ZUF 76 30 29 2.3 2009-08-18 tRNA Pyrococcus horikoshii Arg-tRNA + ArgRS PubMed | Konno, M et al, FEBS J 276, 4763-4779(2009)
1WZ2 176 72 66 3.21 2005-09-06 tRNA Pyrococcus horikoshii Leu-tRNA + LeuRS PubMed | Fukunaga, R et al, NSMB 12, 915-922(2005)
1J2B 148 38 39 3.3 2003-05-27 tRNA Pyrococcus horikoshii Val-tRNA Lamda-form PubMed | Ishitani, R et al, Cell 113, 383-394(2003)
1YFG 75 31 21 3 1997-09-03 tRNA Saccharomyces cerevisiae fMet-tRNA PubMed | Basavappa, R et al, EMBO J 10, 3105-3111(1991)
1F7U 76 30 22 2.2 2001-06-27 tRNA Saccharomyces cerevisiae Arg-tRNA + ArgRS + L-Arg PubMed | Delagoutte, B et al, EMBOJ 19, 5599-5610(2000)
1F7V 73 30 21 2.9 2001-06-27 tRNA Saccharomyces cerevisiae Arg-tRNA + ArgRS + L-Arg PubMed | Delagoutte, B et al, EMBO J 19, 5599-5610(2000)
1IL2 145 68 56 2.6 2001-09-28 tRNA Saccharomyces cerevisiae Asp-tRNA + AspRS PubMed | Moulinier, L et al, EMBO J 20, 5290-5301(2001)
2TRA 73 30 28 3 1987-11-06 tRNA Saccharomyces cerevisiae Asp-tRNA PubMed | Westhof, E et al, Acta Cryst A44, 112-123(1988)
3TRA 72 31 26 3 1989-04-19 tRNA Saccharomyces cerevisiae Asp-tRNA PubMed | Westhof, E et al, Acta Cryst A44, 112-123(1988)
1ASZ 150 66 54 3 1995-05-08 tRNA Saccharomyces cerevisiae Asp-tRNA + AspRS PubMed | Cavarelli, J et al, EMBO J 13, 327-337(1994)
1ASY 150 67 28 2.9 1995-05-08 tRNA Saccharomyces cerevisiae Asp-tRNA + AspRS PubMed | Ruff, M et al, Science 252, 1682-1689(1991)
3EPH 138 60 2.95 2008-11-04 tRNA Saccharomyces cerevisiae Cys-tRNA + Dimethylallyltransferase PubMed | Zhou, C et al, PNAS 105, 16142-16147(2008)
3EPJ 138 61 47 3.1 2008-11-04 tRNA Saccharomyces cerevisiae Cys-tRNA + Dimethylallyltransferase PubMed | Zhou, C et al, PNAS 105, 16142-16147(2008)
3EPK 138 58 47 3.2 2008-11-04 tRNA Saccharomyces cerevisiae Cys-tRNA + Dimethylallyltransferase PubMed | Zhou, C et al, PNAS 105, 16142-16147(2008)
3EPL 138 52 43 3.6 2008-11-04 tRNA Saccharomyces cerevisiae Cys-tRNA + Dimethylallyltransferase PubMed | Zhou, C et al, PNAS 105, 16142-16147(2008)
4TNA 76 31 21 2.5 1978-04-12 tRNA Saccharomyces cerevisiae Phe-tRNA PubMed | Hingerty, B et al, JMB 124, 523-534(1978)
6TNA 76 32 23 2.7 1978-11-16 tRNA Saccharomyces cerevisiae Phe-tRNA PubMed | Sussman, JL et al, JMB 123, 607-630(1978)
1TRA 76 31 23 3 1986-05-16 tRNA Saccharomyces cerevisiae Phe-tRNA PubMed | Westhof, E et al, Biochem 25, 4868-4878(1986)
1TN2 76 30 22 3 1986-10-24 tRNA Saccharomyces cerevisiae Phe-tRNA PubMed | Brown, RS et al, Biochem 24, 4785-4801(1985)
4TRA 76 32 26 3 1987-11-06 tRNA Saccharomyces cerevisiae Phe-tRNA PubMed | Westhof, E et al, Acta Cryst A44, 112-123(1988)
1TTT 228 103 64 2.7 1996-12-23 tRNA Saccharomyces cerevisiae Phe-tRNA + EF-Tu:GDPNP PubMed | Nissen, P et al, Science 270, 1464-1472(1995)
1EHZ 76 33 23 1.93 2000-10-02 tRNA Saccharomyces cerevisiae Phe-tRNA PubMed | Shi, H et al, RNA 6, 1091-1105(2000)
1EVV 76 35 22 2 2000-05-01 tRNA Saccharomyces cerevisiae Phe-tRNA PubMed | Jovine, L et al, JMB 301, 401-414(2000)
1FCW 380 174 118 17 2000-08-11 tRNA Saccharomyces cerevisiae Phe-tRNAs in complex with E70S (not visible) PubMed | Agrawal, RK et al, JCB 150, 447-459(2000)
1I9V 75 29 29 2.6 2001-06-04 tRNA Saccharomyces cerevisiae Phe-tRNA + Neomycin PubMed | Mikkelsen, NE et al, NSB 8, 510-514(2001)
1OB2 76 34 22 3.35 2004-05-27 tRNA Saccharomyces cerevisiae Phe-tRNA + EF-Tu + Kirromycin + GTP Not in PubMed | Nielsen, RC et al, To be published
1OB5 228 112 66 3.1 2005-10-13 tRNA Saccharomyces cerevisiae Phe-tRNA + EF-Tu + Kirromycin PubMed | Parmeggiani, A et al, JBC 281, 2893-2900(2006)
2DLC 66 27 19 2.4 2007-06-12 tRNA Saccharomyces cerevisiae Tyr-tRNA + TyrRS PubMed | Tsunoda, M et al, NAR 35, 4289-4300(2007)
3ICQ 122 47 34 3.2 2009-08-25 tRNA Schizosaccharomyces pombe Phe-tRNA; no ASL PubMed | Cook, AG et al, Nature 461, 60-65(2009)
1FFY 75 34 31 2.2 2000-08-07 tRNA Staphylococcus aureus Ile-tRNA + IleRS + Mupirocin PubMed | Silvian, LF et al, Science 285, 1074-1077(1999)
1QU2 75 34 31 2.2 1999-08-31 tRNA Staphylococcus aureus Ile-tRNA + IleRS + Mupirocin PubMed | Silvian, LF et al, Science 285, 1074-1077(1999)
1QU3 75 32 30 2.9 1999-08-31 tRNA Staphylococcus aureus Ile-tRNA + IleRS + Mupirocin PubMed | Silvian, LF et al, Science 285, 1074-1077(1999)
3AKZ 296 131 112 2.9 2010-09-29 tRNA Thermatoga maritima Gln-tRNA + GlnRS PubMed | Ito, T et al, Nature 467, 612-616(2010)
3AL0 74 34 30 3.37 2010-09-29 tRNA Thermatoga maritima Gln-tRNA + GlnRS PubMed | Ito, T et al, Nature 467, 612-616(2010)
3KFU 290 136 110 3 2010-08-25 tRNA Thermus thermophilus Asp-tRNA + AspRS PubMed | Blaise, M et al, EMBO J 29, 3118-3129(2010)
2CV0 150 68 61 2.4 2006-09-05 tRNA Thermus thermophilus Glu-tRNA + GluRS + L-Glutamate PubMed | Sekine, S et al, Structure 14, 1791-1799(2005)
2CV1 150 65 65 2.41 2006-09-05 tRNA Thermus thermophilus Glu-tRNA + GluRS + L-Glutamate analog + ATP PubMed | Sekine, S et al, Structure 14, 1791-1799(2005)
2CV2 150 69 62 2.69 2006-09-05 tRNA Thermus thermophilus Glu-tRNA + GluRS + Glu-AMS PubMed | Sekine, S et al, Structure 14, 1791-1799(2005)
2DXI 150 69 62 2.2 2006-10-31 tRNA Thermus thermophilus Glu-tRNA + GluRS + L-Glutamol + ATP PubMed | Sekine, S et al, Structure 14, 1791-1799(2006)
1N77 150 73 63 2.4 2003-02-25 tRNA Thermus thermophilus Glu-tRNA + GluRS PubMed | Sekine, S et al, EMBOJ 22, 676-688(2003)
1N78 150 69 63 2.1 2003-02-25 tRNA Thermus thermophilus Glu-tRNA + GluRS PubMed | Sekine, S et al, EMBOJ 22, 676-688(2003)
1G59 150 64 63 2.4 2001-09-01 tRNA Thermus thermophilus Glu-tRNA + GluRS PubMed | Sekine, S et al, NSB 8, 203-206(2001)
2BTE 156 85 73 2.9 2005-09-15 tRNA Thermus thermophilus Leu-tRNA + LeuRS PubMed | Tukalo, M et al, NSMB 12, 923-930(2005)
2BYT 156 82 63 3.3 2005-09-15 tRNA Thermus thermophilus Leu-tRNA + LeuRS PubMed | Tukalo, M et al, NSMB 12, 923-930(2005)
2V0G 152 78 61 3.5 2007-07-03 tRNA Thermus thermophils HB27 Leu-tRNA + LeuRS PubMed | Rock, F et al, Science 316, 1759-(2007)
1EIY 76 28 28 3.3 2000-03-06 tRNA Thermus thermophilus Phe-tRNA + PheRS PubMed | Goldgur, Y et al, Structure 5, 59-68(1997)
2IY5 76 31 23 3.1 2006-09-06 tRNA Thermus thermophilus Phe-tRNA + PheRS PubMed | Moor, N et al, Biochem 45, 10572-10578(2006)
3BBV 76 24 21 10 2008-10-21 tRNA Thermus thermophilus Phe-tRNA in 50S-tRNA-Hsp15 complex PubMed | Jiang, L et al, JMB 386, 1357-1367(2009)
1H4Q 67 30 26 3 2001-06-18 tRNA Thermus thermophilus Pro-tRNA + ProRS PubMed | Yaremchuk, A et al, JMB 309, 989-1002(2001)
1H4S 67 31 25 2.85 2001-06-18 tRNA Thermus thermophilus Pro-tRNA + ProRS PubMed | Yaremchuk, A et al, JMB 309, 989-1002(2001)
1SER 64 30 24 2.9 1994-04-30 tRNA Thermus thermophilus Ser-tRNA + SerRS PubMed | Biou,V et al, Science 263, 1404-1410(1994)
1H3E 81 38 31 2.9 2002-10-27 tRNA Thermus thermophilus Tyr-tRNA + TyrRS Class I PubMed | Yaremchuk, A et al, EMBO J 21, 3829-3840(2002)
1GAX 150 65 57 2.9 2000-12-06 tRNA Thermus thermophilus Val-tRNA + ValRS PubMed | Fukai, S et al, Cell 103, 793-803(2000)
1IVS 150 65 59 2.9 2003-02-11 tRNA Thermus thermophilus Val-tRNA + ValRS PubMed | Fukai, S et al, RNA 9, 100-111(2003)
486D 224 99 79 7.5 1999-09-09 tRNA Ec/Sc/Ttm APE-tRNA + 70S ribosome (backbone only) PubMed | Cate, JH et al, Science 285, 2095-2104(1999)
1EXD 73 30 27 2.7 2000-05-15 tRNA In vitro selected Gln-tRNA aptamer PubMed | Bullock, TL et al, NSB 7, 497-504(2000)
1P6V 69 22 16 3.2 2003-08-12 tmRNA Aquifex aeolicus tmRNA tRNA domain + SmpB PubMed | Gutmann, S et al, Nature 424, 699-703(2003)
2CZJ 248 82 69 3.01 2006-10-31 tmRNA Thermus thermophilus tmRNA + SmpB PubMed | Bessho, Y et al, PNAS 104, 8293-8298(2007)
3IYQ 349 104 58 13 2010-10-20 tmRNA Thermus thermophilus tmRNA + SmpB PubMed | Weis, F et al, EMBO J 29, 3810-3818(2010)
3IYR 349 97 54 13 2010-10-20 tmRNA Thermus thermophilus tmRNA + SmpB PubMed | Weis, F et al, EMBO J 29, 3810-3818(2010)
3IZ4 377 134 105 13.6 2010-10-20 tmRNA Escherichia coli tmRNA + SmpB PubMed | Fu, J et al, EMBO J 29, 3819-3825(2010)
2GO5 217 110 88 7.4 2006-06-13 SRP RNA Canis sp. SRP RNA + Ts 28S rRNA PubMed | Halic, M et al, Science 312, 745-747(2006)
2J37 408 197 164 8 2006-11-08 SRP RNA Canis sp. SRP RNA + Hm 23S rRNA PubMed | Halic, M etal, Nature 444, 508-511(2006)
1DUH 90 42 0 2.7 2000-05-08 SRP RNA Escherichia coli SRP 4.5S RNA domain IV PubMed | Jovine, L et al, Struct 8, 527-540(2000)
1HQ1 49 23 21 1.52 2001-01-03 SRP RNA Escherichia coli SRP 4.5S RNA PubMed | Batey, RT et al, JMB 307, 229-246(2001)
1DUL 49 23 21 1.8 2000-02-28 SRP RNA Escherichia coli SRP 4.5S RNA domain IV + SRP54 homolog PubMed | Batey, RT et al, Science 287, 1232-1239(2000)
1LNT 24 13 11 1.7 2003-06-03 SRP RNA Escherichia coli SRP 4.5S RNA H8 PubMed | Deng, J et al, Acta Cryst D59, 1004-1011(2003)
2PXB 49 24 22 2 2007-08-07 SRP RNA Escherichia coli SRP 4.5S RNA Domain IV mutant PubMed | Keel, AY et al, Structure, 15, 761-772(2007)
2PXD 49 23 22 2 2007-08-07 SRP RNA Escherichia coli SRP 4.5S RNA Domain IV mutant PubMed | Keel, AY et al, Structure 15, 761-772(2007)
2PXE 49 25 22 2 2007-08-07 SRP RNA Escherichia coli SRP 4.5S RNA Domain IV mutant PubMed | Keel, AY et al, Structure 15, 761-772(2007)
2PXF 49 22 21 2 2007-08-07 SRP RNA Escherichia coli SRP 4.5S RNA Domain IV mutant PubMed | Keel, AY et al, Structure 15, 761-772(2007)
2PXK 49 24 22 2 2007-08-07 SRP RNA Escherichia coli SRP 4.5S RNA Domain IV mutant PubMed | Keel, AY et al, Structure 15, 761-772(2007)
2PXL 47 22 20 2.5 2007-08-07 SRP RNA Escherichia coli SRP 4.5S RNA Domain IV mutant PubMed | Keel, AY et al, Structure 15, 761-772(2007)
2PXP 49 24 22 2.5 2007-08-07 SRP RNA Escherichia coli SRP 4.5S RNA Domain IV mutant PubMed | Keel, AY et al, Structure 15, 761-772(2007)
2PXQ 49 23 22 2.5 2007-08-07 SRP RNA Escherichia coli SRP 4.5S RNA Domain IV mutant PubMed | Keel, AY et al, Structure 15, 761-772(2007)
2PXT 49 24 22 2.5 2007-08-07 SRP RNA Escherichia coli SRP 4.5S RNA Domain IV mutant PubMed | Keel, AY et al, Structure 15, 761-772(2007)
2PXU 49 24 21 2.5 2007-08-07 SRP RNA Escherichia coli SRP 4.5S RNA Domain IV mutant PubMed | Keel, AY et al, Structure 15, 761-772(2007)
2PXV 49 23 22 2 2007-08-07 SRP RNA Escherichia coli SRP 4.5S RNA Domain IV mutant PubMed | Keel, AY et al, Structure 15, 761-772(2007)
3LQX 49 24 21 1.93 2010-03-02 SRP RNA Escherichia coli SRP 4.5S RNA + Ec SRP protein Ffh M domain + Cobalt hexamine PubMed | Batey, RT & Doudna, JA, Biochem 41, 11703-11710(2002)
2XKV 96 16 9 13.5 2010-12-15 SRP RNA Escherichia coli SRP 4.5S RNA + SRP PubMed | Estrozi, LF et al, NSMB 18, 88-90 (2011)
1D4R 85 29 22 2 1999-12-02 SRP RNA Homo sapiens SRP RNA 7SL H6 PubMed | Wild, K et al, Structure 7, 1345-1352(1999)
1JID 29 12 10 1.8 2001-10-19 SRP RNA Homo sapiens SRP RNA 7SL H6 + SRP19 PubMed | Wild, K et al, Science 294, 598-601(2001)
1L9A 126 58 45 2.9 2002-06-28 SRP RNA Homo sapiens SRP RNA 7S.S + Mj SRP PubMed | Oubridge, C et al, MC 9, 1251-1261(2002)
1MFQ 128 65 55 3.1 2002-09-20 SRP RNA Homo sapiens SRP RNA 7SL S-domain + SRP19 PubMed | Kuglstatter, A et al, NSB 9, 740-744(2002)
1E8O 50 22 18 3.2 2000-11-08 SRP RNA Homo sapiens SRP RNA 7SL Alu domain + SRP9/14 PubMed | Weichenrieder, O et al, Nature 408, 167-173(2000)
3KTV 216 91 80 3.8 2010-02-16 SRP RNA Homo sapiens SRP RNA S-domain + SRP19 PubMed | Wild, K et al, Acta Cryst D66, 295-303(2010)
1LNG 97 50 44 2.3 2002-06-07 SRP RNA Methanocaldococcus jannaschii SRP RNA 7S.S + SRP19 PubMed | Hainzl, T et al, Nature 417, 767-771(2002)
1Z43 101 46 39 2.6 2005-06-14 SRP RNA Methanocaldococcus jannaschii SRP RNA 7S.S PubMed | Hainzl, T et al, RNA 11, 1043-1050(2005)
2V3C 192 96 86 2.5 2007-09-04 SRP RNA Methanocaldococcus jannaschii SRP RNA 7S.S + SRP19 + SRP54 PubMed | Hainzl, T et al, PNAS 104, 14911-14916(2007)
3KTW 191 87 67 3.2 2010-02-16 SRP RNA Sulfolobus solfataricus SRP RNA S-domain + SRP19 PubMed | Wild, K et al, Acta Cryst D66, 295-303(2010)
1QZW 188 60 44 4.1 2003-11-18 SRP RNA Sulfolobus folfataricus SRP RNA 7S + Ss-SRP54 PubMed | Rosendal, KR et al , PNAS 100, 14701-14706(2003)
1RY1 302 132 112 12 2004-04-20 SRP RNA Synthetic SRP 7S RNA (mammalian) + elongation-arrested 80S ribosome PubMed | Halic, M et al, Nature 427, 808-814(2004)
1RMN 49 20 19 n/a 1995-01-26 HH ribozyme   HH ribozyme based on FRET PubMed | Tuschl, T et al, Science 266, 785-789(1994)
1HMH 141 75 30 2.6 1995-12-07 HH ribozyme sTRSV HH ribozyme RNA-DNA complex PubMed | Pley, HW et al, Nature 372, 68-74(1994)
1MME 82 32 32 3.1 1996-02-06 HH ribozyme sTRSV HH ribozyme with All-RNA PubMed | Scott, WG et al, Cell 81, 991-1002(1995)
359D 41 20 17 3 1997-12-03 HH ribozyme sTRSV HH ribozyme + Tb3+ PubMed | Feig, AL et al, Science 279, 81-84(1998)
299D 41 17 17 3 1997-02-12 HH ribozyme sTRSV HH ribozyme + Mn2+ PubMed | Scott, WG et al, Science 274, 2065-2069(1996)
300D 41 14 17 3 1997-02-12 HH ribozyme sTRSV HH ribozyme + Mn2+ PubMed | Scott, WG et al, Science 274, 2065-2069(1996)
301D 41 18 17 3 1997-02-12 HH ribozyme sTRSV HH ribozyme + Mn2+ PubMed | Scott, WG et al, Science 274, 2065-2069(1996)
379D 41 13 11 3.1 1998-03-25 HH ribozyme sTRSV HH ribozyme PubMed | Murray, JP et al, Cell 92, 665-673(1998)
488D 65 17 32 3.1 2000-03-06 HH ribozyme sTRSV HH ribozyme RNA cleaved PubMed | Murray, JB et al, Mol Cell 5, 279-287(2000)
1M5K 226 104 89 2.4 2002-08-02 HP ribozyme sTRSV HP ribozyme + U1A snRNP PubMed | Rupert, PB et al, Science 298, 1421-1424(2002)
1M5O 226 102 95 2.2 2002-10-12 HP ribozyme sTRSV HP ribozyme + U1A snRNP PubMed | Rupert, PB et al, Science 298, 1421-1424(2002)
1M5P 224 99 87 2.6 2002-10-12 HP ribozyme sTRSV HP ribozyme + U1A snRNP PubMed | Rupert, PB et al, Science 298, 1421-1424(2002)
1M5V 226 102 92 2.4 2002-10-12 HP ribozyme sTRSV HP ribozyme + U1A snRNP PubMed | Rupert, PB et al, Science 298, 1421-1424(2002)
2D2K 61 30 26 2.65 2005-11-01 HP ribozyme sTRSV HP ribozyme native PubMed | Alam, S et al, Biochem 44, 14396-14408(2005)
2D2L 60 31 26 2.5 2005-11-01 HP ribozyme sTRSV HP ribozyme with U39-C3-linker PubMed | Alam, S et al, Biochem 44, 14396-14408(2005)
1X9C 61 31 2.19 2005-11-22 HP ribozyme sTRSV HP ribozyme with U39C PubMed | Alam, S et al, Biochem 44, 14396-14408(2005)
1X9K 62 28 3.1 2005-11-22 HP ribozyme sTRSV HP ribozyme with U39C PubMed | Alam, S et al, Biochem 44, 14396-14408(2005)
1ZFT 61 30 27 2.33 2006-02-14 HP ribozyme sTRSV HP ribozyme with G8I PubMed | Salter, J et al, Biochem 45, 686-700(2006)
1ZFV 61 30 28 2.4 2006-02-14 HP ribozyme sTRSV HP ribozyme with G8A PubMed | Salter, J et al, Biochem 45, 686-700(2006)
1ZFX 61 30 28 2.38 2006-02-14 HP ribozyme sTRSV HP ribozyme with G8U PubMed | Salter, J et al, Biochem 45, 686-700(2006)
2BCY 61 29 (30) 2.7 2006-02-14 HP ribozyme sTRSV HP ribozyme with U39C and G8MTU PubMed | Salter, J et al, Biochem 45, 686-700(2006)
2BCZ 61 29 2.4 2006-02-14 HP ribozyme sTRSV HP ribozyme with U30C and G8I PubMed | Salter, J et al, Biochem 45, 686-700(2006)
2FGP 61 30 27 2.4 2006-02-14 HP ribozyme sTRSV HP ribozyme with U39C and G8DAP PubMed | Salter, J et al, Biochem 45, 686-700(2006)
2OUE 61 30 28 2.05 2007-03-06 HP ribozyme sTRSV HP ribozyme wit G8 PubMed | Salter, J et al, Biochem 45, 686-700(2006)
2P7D 61 29 28 2.25 2007-05-22 HP ribozyme sTRSV Minimal hinged HP ribozyme PubMed | Torelli, AT et al, RNA 13, 1052-1070(2007)
2P7E 61 29 28 2.05 2007-05-22 HP ribozyme sTRSV Minimal hinged HP ribozyme PubMed | Torelli, AT et al, RNA 13, 1052-1070(2007)
2P7F 61 31 27 2.35 2007-05-22 HP ribozyme sTRSV Minimal hinged HP ribozyme PubMed | Torelli, AT et al, RNA 13, 1052-1070(2007)
2NPY 61 29 28 2.65 2007-08-14 HP ribozyme sTRSV HP ribozyme with linkers PubMed | MacElrevey, C et al, Acta Cryst D63, 812-825(2007)
2NPZ 61 27 24 3.35 2007-08-14 HP ribozyme sTRSV HP ribozyme with linkers PubMed | MacElrevey, C et al, Acta Cryst D63, 812-825(2007)
3CQS 61 30 27 2.8 2008-05-20 HP ribozyme sTRSV HP ribozyme with A14S9L PubMed | Torelli, AT et al, BBRC 371, 154-158(2008)
2QUS 138 59 48 2.4 2008-07-15 HH ribozyme sTRSV HH ribozyme G12A mutant uncleaved PubMed | Chi, YI et al, PLoS B 6, e234(2008)
2QUW 138 60 49 2.2 2008-07-15 HH ribozyme sTRSV HH ribozyme G12A mutant cleaved PubMed | Chi, YI et al, PLoS B 6, e234(2008)
3B58 61 29 28 2.65 2008-08-12 HP ribozyme sTRSV HP ribozyme minimally hinged with A38G PubMed | MacElrevey, C et al, RNA 14, 1600-1616(2008)
3B5A 61 30 28 2.35 2008-08-12 HP ribozyme sTRSV HP ribozyme minimally hinged with A38G PubMed | MacElrevey, C et al, RNA 14, 1600-1616(2008)
3B5F 61 29 28 2.7 2008-08-12 HP ribozyme sTRSV HP ribozyme minimally hinged with A38DAP PubMed | MacElrevey, C et al, RNA 14, 1600-1616(2008)
3B5S 61 30 28 2.25 2008-08-12 HP ribozyme sTRSV HP ribozyme minimally hinged with A38DAP PubMed | MacElrevey, C et al, RNA 14, 1600-1616(2008)
3B91 61 30 29 2.75 2008-08-12 HP ribozyme sTRSV HP ribozyme minimally hinged with A382AP PubMed | MacElrevey, C et al, RNA 14, 1600-1616(2008)
3BBI 61 30 28 2.35 2008-08-12 HP ribozyme sTRSV HP ribozyme minimally hinged with A38(2AP) and 2'-OMe PubMed | MacElrevey, C et al, RNA 14, 1600-1616(2008)
3BBK 61 30 29 2.75 2008-08-12 HP ribozyme sTRSV HP ribozyme minimally hinged with A38C and 2',5'-PDL PubMed | MacElrevey, C et al, RNA 14, 1600-1616(2008)
3BBM 61 30 28 2.65 2008-08-12 HP ribozyme sTRSV HP ribozyme minimally hinged with A38C and 2'-OMe PubMed | MacElrevey, C et al, RNA 14, 1600-1616(2008)
3CR1 61 29 28 2.25 2008-08-26 HP ribozyme sTRSV HP ribozyme minimally hinged with A14S9L and A38C PubMed | MacElrevey, C et al, RNA 14, 1600-1616(2008)
3GS1 61 31 27 2.85 2009-04-21 HP ribozyme sTRSV HP ribozyme A38N1dA38 variant PubMed | Spitale, RC et al, JACS 131, 6093-6095(2009)
3GS5 61 29 28 2.75 2009-04-21 HP ribozyme sTRSV HP ribozyme A38N1dA38 variant PubMed | Spitale, RC et al, JACS 131, 6093-6095(2009)
3GS8 61 30 28 2.85 2009-04-21 HP ribozyme sTRSV HP ribozyme A38N1dA38 variant + TSM PubMed | Spitale, RC et al, JACS 131, 6093-6095(2009)
3I2Q 61 30 27 2.9 2009-11-03 HP ribozyme sTRSV HP ribozyme with 2'-OMe and N1-deazaA at A9 PubMed | Spitale, RC et al, Biochem 48, 7777-7779(2009)
3I2R 61 30 28 2.8 2009-11-03 HP ribozyme sTRSV HP ribozyme with 2',5'-linkage and N1-deazaA at A9 PubMed | Spitale, RC et al, Biochem 48, 7777-7779(2009)
3I2S 61 30 27 2.75 2009-11-03 HP ribozyme sTRSV HP ribozyme with 2'-OMe and N1-deazaA at A10 PubMed | Spitale, RC et al, Biochem 48, 7777-7779(2009)
3I2U 61 30 27 2.8 2009-11-03 HP ribozyme sTRSV HP ribozyme with 2',5'-linkage and N1-deazaA at A10 PubMed | Spitale, RC et al, Biochem 48, 7777-7779(2009)
1NYI 41 20 16 2.85 2004-02-24 HH ribozyne Synthetic HH ribozyme with 5'-5' G-G linkage PubMed | Dunham, CM et al, JMB 332, 327-336(2003)
1Q29 41 17 15 3 2004-02-24 HH ribozyme Synthetic HH ribozyme with 5'-5' G-G linkage PubMed | Dunham, CM et al, JMB 332, 327-336(2003)
2OEU 63 30 24 2 2007-02-20 HH ribozyme Schistosoma mansoni HH ribozyme (full-length) PubMed | Martick, M et al, CB 15, 332-342(2008)
2GOZ 63 29 21 2.2 2006-07-018 HH ribozyme Schistosoma mansoni HH ribozyme (full-length) PubMed | Martick, M & Scott, WG, Cell, 126, 309-326(2006)
1CX0 72 32 28 2.3 1999-09-08 HDV ribozyme HDV HDV ribozyme + RBP PubMed | Ferre-D'Amare, AR et al, Nature 395, 567-574(1998)
1DRZ 72 29 28 2.3 1999-12-22 HDV ribozyme HDV HDV ribozyme + RBP PubMed | Ferre-D'Amare, AR et al, Nature 395, 567-574(1998)
1SJ3 73 30 29 2.2 2004-05-18 HDV ribozyme HDV HDV ribozyme precursor + Mg2+ PubMed | Ke, A et al, Nature 429, 201-205(2004)
1SJ4 73 31 29 2.7 2004-05-18 HDV ribozyme HDV HDV ribozyme precursor with C75U + Cu2+ PubMed | Ke, A et al, Nature 429, 201-205(2004)
1SJF 74 31 29 2.75 2004-05-18 HDV ribozyme HDV HDV ribozyme precursor with C75U + Co3+ PubMed | Ke, A et al, Nature 429, 201-205(2004)
1VBX 73 32 29 2.7 2004-05-18 HDV ribozyme HDV HDV ribozyme precursor with C75U + EDTA PubMed | Ke, A et al, Nature 429, 201-205(2004)
1VBY 73 35 n/a 2.9 2004-05-18 HDV ribozyme HDV HDV ribozyme precursor with C75U + Mn2+ PubMed | Ke, A et al, Nature 429, 201-205(2004)
1VBZ 73 33 29 2.8 2004-05-18 HDV ribozyme HDV HDV ribozyme precursor with C75U + Ba2+ PubMed | Ke, A et al, Nature 429, 201-205(2004)
1VC0 73 32 29 2.5 2004-05-18 HDV ribozyme HDV HDV ribozyme precursor with C75U + Sr2+ PubMed | Ke, A et al, Nature 429, 201-205(2004)
1VC5 70 28 28 3.4 2004-05-18 HDV ribozyme HDV HDV ribozyme precursor + EDTA PubMed | Ke, A et al, Nature 429, 201-205(2004)
1VC6 72 32 28 2.8 2004-05-18 HDV ribozyme HDV HDV ribozyme precursor with C75U + Mg2+ PubMed | Ke, A et al, Nature 429, 201-205(2004)
1VC7 74 30 30 2.45 2004-05-18 HDV ribozyme HDV HDV ribozyme precursor with C75U + Sr2+ PubMed | Ke, A et al, Nature 429, 201-205(2004)
2OIH 73 33 30 2.4 2007-03-27 HDV ribozyme HDV HDV ribozyme precursor with C75U + U1 snRNP A PubMed | Ke, A et al, Structure 15, 281-287(2007)
2OJ3 73 32 28 2.9 2007-03-27 HDV ribozyme HDV HDV ribozyme precursor with C75U + Tl + Co hexamine PubMed | Ke, A et al, Structure 15, 281-287(2007)
3NKB 72 38 31 1.92 2010-09-01 HDV ribozyme Homo sapiens HDV ribozyme PubMed | Chen, J-H et al, Biochem 49, 6508-6518(2010)
3HHN 274 116 113 3 2009-11-24 RNAP ribozyme Homo sapiens RNA polymerase ribozyme PubMed | Shechner, DM et al, Science 326, 1271-1275(2009)
3IVK 256 120 116 3.1 2010-03-02 RNAP ribozyme Mus musculus RNA polymerase ribozyme PubMed | Shechner, DM et al, Science 326, 1271-1275(2009)
429D 48 17 16 2.7 1999-03-01 Leadzyme In vitro selected Leadzyme LZ4 (derived from Phe-tRNA)+ Mg2+ PubMed | Wedekind, JE et al, NSB 6, 261-268(1999)
1YTU 19 6 7 2.5 2005-04-05 gRNA Drosophila melanogaster gRNA + Archaeoglobus fulgidus Piwi protein PubMed | Ma JB et al, Nature 434, 666-670(2005)
2HVY 57 21 21 2.3 2006-09-12 gRNA Pyrococcus furiosus H/ACA gRNA Afu-46 + Cbf5 + Nop10 + L7Ae + Gar1 PubMed | Li, L & Ye, K, Nature 443, 302-307(2006)
2RFK 61 27 24 2.87 2008-02-05 gRNA Pyrococcus furiosus H/ACA gRNA Pf9 + Cbf5 + Nop10 + Gar1 PubMed | Liang B et al, NSBM 14, 1189-1195(2007)
3HAX 72 32 31 2.1 2009-06-23 gRNA Pyrococcus furiosus H/ACA gRNA Afu-46 + Cbf5 + Nop10 + L7Ae PubMed | Duan, J et al, MC 34, 427-439(2009)
3HAY 82 30 27 4.99 2009-06-23 gRNA Pyrococcus furiosus H/ACA gRNA Afu-46 + Cbf5 + Nop10 + L7Ae PubMed | Duan, J et al, MC 34, 427-439(2009)
3HJW 71 31 29 2.4 2009-06-23 gRNA Pyrococcus furiosus H/ACA gRNA Pf9-Pf6 + Cbf5 + Nop10 + L7Ae PubMed | Liang, B et al, NSMB 16, 740-746(2009)
3HJY 60 21 22 3.65 2009-06-23 gRNA Pyrococcus furiosus H/ACA gRNA Pf9-Pf6 + Cbf5 + Nop10 + L7Ae PubMed | Liang, B et al, NSMB 16, 740-746(2009)
3LWO 71 31 27 2.86 2010-07-14 gRNA Pyrococcus furiosus H/ACA gRNA + Pf Cbf5 + Pf Nop10 + L7ae PubMed | Zhou, J et al, JMB 401, 690-695(2010)
3LWP 71 29 28 2.5 2010-07-14 gRNA Pyrococcus furiosus H/ACA gRNA + Pf Cbf5 + Pf Nop10 + L7ae PubMed | Zhou, J et al, JMB 401, 690-695(2010)
3LWQ 71 29 28 2.68 2010-07-14 gRNA Pyrococcus furiosus H/ACA gRNA + Pf Cbf5 + Pf Nop10 + L7ae PubMed | Zhou, J et al, Biochem 49, 6276-6281(2010)
3LWR 70 31 27 2.2 2010-07-14 gRNA Pyrococcus furiosus H/ACA gRNA + Pf Cbf5 + Pf Nop10 + L7ae PubMed | Zhou, J et al, Biochem 49, 6276-6281(2010)
3LWV 69 29 27 2.5 2010-07-14 gRNA Pyrococcus furiosus H/ACA gRNA + Pf Cbf5 + Pf Nop10 + L7ae PubMed | Zhou, J et al, Biochem 49, 6276-6281(2010)
3ID5 64 18 16 4.01 2009-08-25 gRNA Sulfolobus solfataricus Box C/D gRNA in Ss C/D RNP + L7Ae PubMed | Ye, K et al, PNAS 106, 13808-13813(2009)
2GJE 18 0 0 3.37 2006-09-05 gRNA Trypanosoma brucei TREU927 gRNA + GBP MRP1/MRP2 PubMed | Schumacher, MA et al, Cell 126, 701-711(2006)
3MQK 22 7 5 2.8 2010-12-29 gRNA Synthetic H/ACA gRNA (TSL 22-mer) + Pf Cbf5-Nop10-Gar1 PubMed | Zhou, J et al, RNA 17, 244-250(2011)
2NOQ 317 139 115 7.3 2006-11-21 IRES RNA CrPV IRES RNA + Sc 18S rRNA + Sc 25S rRNA PubMed | Schuler, M et al, NSMB 13, 1092-1096(2006)
3B31 43 18 16 2.4 2007-12-25 IRES RNA CrPV IRES RNA domain 3 PK PubMed | Costantino, DA et al, NSMB 15, 57-64(2008)
3MJ3 43 18 15 3.1 2010-05-19 IRES RNA CrPV CrPV IGR IRES RNA domain 3 PubMed | Kieft, JS et al, RNA 16, 1118-1123(2010)
3MJA 43 16 16 2.8 2010-05-19 IRES RNA CrPV CrPV IGR IRES RNA domain 3 PubMed | Kieft, JS et al, RNA 16, 1118-1123(2010)
3MJB 43 17 15 2.8 2010-05-19 IRES RNA CrPV CrPV IGR IRES RNA domain 3 PubMed | Kieft, JS et al, RNA 16, 1118-1123(2010)
1KH6 48 23 16 2.9 2002-04-26 IRES RNA HCV IRES RNA domain III 4wj dimer PubMed | Kieft, JS et al, NSB 9, 370-374(2002)
2NOK 88 40 35 3 2007-02-13 IRES RNA HCV IRES RNA domain II PubMed | Dibrov, SM et al, Angew Chem Int 46, 226-229(2007)
2PN3 44 18 16 2.9 2008-04-01 IRES RNA HCV IRES RNA subdomain IIA PubMed | Zhao, Q et al, Acta Crystallogr D 64, 436-443(2008)
2PN4 88 39 32 2.32 2008-04-01 IRES RNA HCV IRES RNA subdomain IIA PubMed | Zhao, Q et al, Acta Crystallogr D 64, 436-443(2008)
2IL9 267 77 47 3.1 2007-02-13 IRES RNA PSIV IRES RNA PubMed | Pfingsten, JS et al, Science 314, 1450-1454(2006)
3IBK 22 13 12 2.2 2010-05-12 Telomerase RNA Homo sapiens Telomerase RNA G-quadruplex PubMed | Collie, GW et al, NAR 38, 5569-5580(2010)
2IPY 60 25 24 2.8 2007-01-09 IRE RNA Xenopus laevis IRE RNA in human ferritin H-chain mRNA 5'-UTR + IRP1 PubMed | Walden, WE et al, Science 314, 1903-1908(2006)
1QC0 57 28 28 1.55 1999-11-11 PCC RNA Escherichia coli Plasmid copy control RNA PubMed | Klosterman, PS et al, Biochem 38, 14784-14792(1999)
1QCU 44 22 22 1.2 1999-11-11 PCC RNA Escherichia coli Plamid copy control RNA PubMed | Klosterman, PS et al, Biochem 38, 14784-14792(1999)
1A9N 48 12 12 2.38 1998-09-23 snoRNA Homo sapiens U2 snRNA HL4 PubMed | Price SR, Nature 394, 645-650(1998)
3CGP 25 11 10 1.57 2008-07-01 snoRNA Saccharomyces cerevisiae U2 snRNA + intron BPS1 iodide PubMed | Lin Y & Kielkopft CE, Biochem 47, 5503-5514(2008)
3CGQ 25 11 10 2.5 2008-07-01 snoRNA Saccharomyces cerevisiae U2 snRNA + intron BPS1 native PubMed | Lin Y & Kielkopft CE, Biochem 47, 5503-5514(2008)
3CGR 25 11 10 2.1 2008-07-01 snoRNA Saccharomyces cerevisiae U2 snRNA + intron BPS2 PubMed | Lin Y & Kielkopft CE, Biochem 47, 5503-5514(2008)
3CGS 25 11 10 1.65 2008-07-01 snoRNA Saccharomyces cerevisiae U2 snRNA + intron BPS3 PubMed | Lin Y & Kielkopft CE, Biochem 47, 5503-5514(2008)
1E7K 34 17 14 2.9 2001-02-19 snoRNA Homo sapiens U4 snRNA + RNP PubMed | Vidovic I et al, MC 6, 1331-1342(2000)
2OZB 66 26 25 2.6 2007-03-20 snoRNA Homo sapiens U4 snRNA 5'-SL RNA + Prp31 Nop domain PubMed | Liu S et al, Science 316, 115-120(2007)
1URN 56 14 13 1.92 1996-03-08 snoRNA Synthetic U1 snRNA + Homo sapiens U1A MUTANT PubMed | Oubridge, C et al, Nature 372, 432-438(1994)
1RLG 50 23 18 2.7 2004-06-01 snoRNA Synthetic Box C/D RNA + L7Ae PubMed | Moore T et al, Structure 12, 807-818(2004)
1I9X 26 12 12 2.18 2001-09-05 snoRNA Synthetic U2 snRNA PubMed | Berglund, JA et al, RNA 7, 682-691(2001)
1RPU 42 20 18 2.5 2004-01-13 siRNA Synthetic siRNA + CIRV p19 PubMed | Vargason JM et al, Cell 115, 799-811(2003)
1R9F 38 19 19 1.85 2004-01-27 siRNA Synthetic siRNA + TBSV p19 PubMed | Ye, K et al, Nature 426, 874-878(2003)
2ZI0 38 18 18 2.82 2008-07-22 siRNA Synthetic siRNA + TAV2b PubMed | Chen, HY et al, EMBOR 9, 754-760(2008)
3CZ3 76 37 36 3.23 2009-05-05 siRNA TAV siRNA + TAV2b Not in PubMed | Ma, JB et al, To be published
2BGG 29 10 10 2.2 2005-03-31 siRNA Synthetic siRNA duplex + Af-Piwi protein AF1318 PubMed | Parker, JS et al, Nature 434, 663-666(2005)
2G92 23 10 10 1.61 2006-05-18 siRNA Synthetic siRNA duplex with 2,4-dFU PubMed | Xia, J et al, ACS Chem Biol 1, 176-183(2006)
2F8S 44 19 19 3 2006-10-31 siRNA Designed ds-siRNA + A.aeolicus Argonaute PubMed | Yuan, YR et al, Structure 14, 1557-1565(2006)
2F8T 50 23 24 3.1 2006-10-31 siRNA Designed ds-siRNA + A.aeolicus Argonaute PubMed | Yuan, YR et al, Structure 14, 1557-1565(2006)
2ZKO 42 19 18 1.7 2008-10-14 siRNA Synthetic siRNA duplex + human influenza A virus NS1 RBD PubMed | Cheng, A et al, Cell Res 19, 187-195(2009)
3O3I 28 12 0 2.8 2011-01-12 piRNA Synthetic piRNA + Hs Hiwi1 PAZ domain PubMed | Tian, Y et al, PNAS 108, 903-910(2011)
3O6E 28 12 0 2.9 2011-01-12 piRNA Synthetic piRNA + Hs Hiwi1 PAZ domain PubMed | Tian, Y et al, PNAS 108, 903-910(2011)
3O7V 28 12 0 2.1 2011-01-12 piRNA Synthetic piRNA + Hs Hiwi1 PAZ domain PubMed | Tian, Y et al, PNAS 108, 903-910(2011)
2XLI 14 7 5 2.33 2010-09-22 crRNA Pseudomonas aeruginosa crRNA + Csy4 PubMed | Haurwitz, RE et al, Science 329, 1355-1358(2010)
2XLJ 15 7 5 2.6 2010-09-22 crRNA Pseudomonas aeruginosa crRNA + Csy4 PubMed | Haurwitz, RE et al, Science 329, 1355-1358(2010)
2XLK 30 14 9 1.8 2010-09-22 crRNA Pseudomonas aeruginosa crRNA + Csy4 PubMed | Haurwitz, RE et al, Science 329, 1355-1358(2010)
1YVP 52 14 10 2.2 2005-06-07 Y RNA Synthetic Y RNA + Xl Ro autoantigen PubMed | Stein, AJ et al, Cell 121, 529-539(2005)
1FOQ 545 214 200 20 2000-12-22 Prohead RNA Bacteriophage Phi29 Prohead RNA PubMed | Simpson, AA et al, Nature 408, 745-750(2000)
3P22 194 124 104 2.5 2010-12-08 PAN RNA KSHV PAN RNA ENE + A9 RNA PubMed | Mitton-Fry, RM et al, Science 330, 1244-1247(2010)
1S03 94 43 42 2.7 2004-05-25 mRNA Escherichia coli spc mRNA derivative + E.coli S8 PubMed | Merianos, HJ et al, RNA 10, 954-964(2004)
2PJP 23 11 10 2.3 2007-10-30 mRNA Escherichia coli fdhF SECIS mRNA + E.coli EF SelB WH3/4 PubMed | Soler, N et al, JMB 370, 728-741(2007)
2PLY 46 20 20 2.6 2007-11-06 mRNA Escherichia coli fdhF SECIS mRNA + M.thermoacetica EF SelB WH1-4 PubMed | Soler, N et al, JMB 370, 728-741(2007)
1U63 98 43 3.4 2005-04-12 mRNA Methanococcus jannaschii L1 mRNA with AACU tetraloop and a K-turn + Mj L1 PubMed | Nevskaya, N et al, NAR 33, 478-485(2005)
2VPL 94 40 39 2.3 2008-09-23 mRNA Methanococcus vaniellii L1 mRNA with AACU tetraloop and a K-turn + Tth L1 PubMed | Tishchenko, S et al, JMB 383, 301-305(2008)
2HW8 36 18 17 2.1 2006-12-19 mRNA Methanococcus vaniellii L1 mRNA with UUCG tetraloop and a K-turn + Tth L1 PubMed | Tishchenko, S et al, Acta Cryst D62, 1545-1554(2006)
1ZHO 152 70 71 2.6 2006-05-09 mRNA Methanococcus vannielii L1 mRNA with UUCG tetraloop and a K-turn + Tth L1 PubMed | Nevskaya, N et al, JMB 355, 747-759(2006)
2UWM 46 20 19 2.31 2007-05-08 mRNA Moorella thermoacetica SECIS mRNA with GGUCU pentaloop + SelB C-terminal domain PubMed | Ose, T et al, Structure 15, 577-586(2007)
1WSU 65 28 26 2.3 2005-01-25 mRNA Moorella thermoacetica SECIS mRNA with GGUCU pentaloop + SelB C-terminal domain PubMed | Yoshizawa, S et al, NSMB 12, 198-203(2005)
1T0K 27 14 11 3.24 2004-07-20 mRNA Saccharomyces cerevisiae pre-mRNA + L30e PubMed | Chao, JA et al, Structure 12, 1165-1176(2004)
2F8K 15 9 6 2 2006-01-24 mRNA Synthetic Saccharomyces cerevisiae NNF1 mRNA 3'-UTR SRE + S.cerevisiae Vtsp1 SAM domain PubMed | Aviv, T et al, NSMB 13, 168-176(2006)
3GLP 40 16 12 1.23 2009-05-26 mRNA Synthetic Homo sapiens mRNA CUG repeat dsRNA with U:U basepair PubMed | Kiliszek, A et al, NAR 37, 4149-4156(2009)
3GM7 36 18 12 1.58 2009-05-26 mRNA Synthetic Homo sapiens mRNA CUG repeat dsRNA with U:U basepairs PubMed | Kiliszek, A et al, NAR 37, 4149-4156(2009)
1ZBH 32 11 10 3 2006-09-26 mRNA Synthetic histone mRNA SL-RNA + H.sapiens 3'-5' exonuclease ERI1 no pdf and no publication
1ZEV 36 17 13 1.58 2005-10-25 mRNA Synthetic Pathogenic CUG repeat RNA in DM PubMed | Mooers, BH et al, PNAS 102, 16626-16631(2005)
3P6Y 21 3 0 2.9 2010-11-03 mRNA Synthtic pre-mRNA recognition by human cleavage factor Im complex PubMed | Li, H et al, Cell Res April 21 Published (2011)
3A6P 92 42 44 2.92 2009-12-08 miRNA Homo sapiens pre-miRNA PubMed | Okada, C et al, Science 326, 1275-1279(2009)
3HTX 88 40 40 3.1 2009-09-29 miRNA Arabidopsis thaliana miR173 miRNA + A.thaliana HEN1 PubMed | Huang, Y et al, Nature 461, 823-827(2009)
3ADI 20 7 9 3.2 2010-05-26 miRNA Arabidopsis thaliana pre-miRNA (pre-miR 164b) + At HYL1 dsRBD2 (HR1) PubMed | Yang, SW et al, Structure 18, 594-605(2010)
3ADL 20 9 9 2.2 2010-05-26 miRNA Arabidopsis thaliana pre-miRNA (pre-miR 164b) + Hs TRBP2 dsRBD2 (TR2) PubMed | Yang, SW et al, Structure 18, 594-605(2010)
1HVU 120 48 36 4.75 1999-01-13 vRNA HIV-1 HIV-1 pseudoknot RNA PubMed | Jaeger, J et al, EMBO J 17, 4535-4542(1998)
1NLC 43 22 22 1.85 2003-05-13 vRNA HIV-1A HIV-1 5'-UTR DIS RNA + Zn PubMed | Ennifar, E et al, NAR 31, 2671-2682(2003)
1O3Z 46 22 23 2.65 2003-05-27 vRNA HIV-1A HIV-1 5'-UTR DIS RNA + Ru hexamine PubMed | Ennifar, E et al, NAR 31, 2671-2682(2003)
1WVD 46 22 22 2.93 2004-12-21 vRNA HIV-1A HIV-1 5'-UTR DIS RNA + Co PubMed | Ennifar, E et al, NAR 31, 2671-2682(2003)
1Y6S 46 22 22 2.9 2004-12-21 vRNA HIV-1A HIV-1 5'-UTR DIS RNA + Ba PubMed | Ennifar, E et al, NAR 31, 2671-2682(2003)
1Y6T 46 22 22 2.6 2004-12-21 vRNA HIV-1A HIV-1 5'-UTR DIS RNA + Co hexamine PubMed | Ennifar, E et al, NAR 31, 2671-2682(2003)
1Y73 46 22 22 2.9 2004-12-21 vRNA HIV-1A HIV-1 5'-UTR DIS RNA + Pt PubMed | Ennifar, E et al, NAR 31, 2671-2682(2003)
1Y90 46 22 20 3.08 2004-12-21 vRNA HIV-1A HIV-1 5'-UTR DIS RNA + Mn PubMed | Ennifar, E et al, NAR 31, 2671-2682(2003)
1Y95 46 22 21 2.8 2004-12-21 vRNA HIV-1A HIV-1 5'-UTR DIS RNA + Pb PubMed | Ennifar, E et al, NAR 31, 2671-2682(2003)
2OIJ 46 20 20 2.31 2007-02-13 vRNA HIV-1B HIV-1 5'-UTR DIS RNA + Au PubMed | Ennifar, E et al, NAR 31, 2671-2682(2003)
1Y99 46 22 22 2.4 2004-12-21 vRNA HIV-1A HIV-1 5'-UTR DIS RNA PubMed | Ennifar, E et al, Structure Fold Des 7, 1439-1449(1999)
462D 46 22 22 1.6 1999-12-02 vRNA HIV-1A HIV-1 5'-UTR DIS RNA PubMed | Ennifar, E et al, Structure Fold Des 7, 1439-1449(1999)
1XP7 46 20 20 2.5 2005-10-18 vRNA HIV-1F HIV-1 DIS RNA kissing complex PubMed | Ennifar, E & Dumas, P, JMB 356, 771-782(2006)
1XPE 46 20 20 1.94 2005-10-18 vRNA HIV-1B HIV-1 DIS RNA kissing complex PubMed | Ennifar, E & Dumas, P, JMB 356, 771-782(2006)
1XPF 46 20 20 2.3 2005-10-18 vRNA HIV-1A HIV-1 DIS RNA kissing complex PubMed | Ennifar, E & Dumas, P, JMB 356, 771-782(2006)
1Y3O 46 20 18 2.7 2005-11-08 vRNA HIV-1F HIV-1 DIS RNA kissing complex (Mn soaked) PubMed | Ennifar, E & Dumas, P, JMB 356, 771-782(2006)
1Y3S 46 20 18 2.25 2005-11-08 vRNA HIV-1F HIV-1 DIS RNA kissing complex PubMed | Ennifar, E & Dumas, P, JMB 356, 771-782(2006)
1YXP 46 20 18 2.4 2006-01-31 vRNA HIV-1F HIV-1 DIS RNA kissing complex (Zn soaked) PubMed | Ennifar, E & Dumas, P, JMB 356, 771-782(2006)
1ZCI 92 40 36 1.65 2006-01-31 vRNA HIV-1F HIV-1 DIS RNA kissing complex PubMed | Ennifar, E & Dumas, P, JMB 356, 771-782(2006)
1K9W 92 33 32 3.1 2001-11-30 vRNA HIV-1A HIV-1 5'-UTR DIS RNA kissing complex PubMed | Ennifar, E et al, NSB 8, 1064-1068(2001)
2OIY 46 20 20 1.6 2007-12-25 vRNA HIV-1B HIV-1 DIS RNA PubMed | Ennifar, E et al, NAR 38, 5807-5816(2010)
2OJ0 46 20 20 2.6 2007-12-25 vRNA HIV-1B HIV-1 DIS RNA PubMed | Ennifar, E et al, NAR 38, 5807-5816(2010)
3FAR 46 20 20 2.4 2009-11-24 vRNA HIV-1B HIV-1 DIS RNA PubMed | Ennifar, E et al, NAR 38, 5807-5816(2010)
2B8R 46 20 20 2.6 2005-10-25 vRNA HIV-1B HIV-1 5'-UTR DIS RNA kissing complex PubMed | Ennifar, E et al, NSB 8, 1064-1068(2001)
2B8S 46 20 20 2.76 2005-10-25 vRNA HIV-1A HIV-1 5'-UTR DIS RNA kissing complex PubMed | Ennifar, E et al, NSB 8, 1064-1068(2001)
2FCX 46 20 18 2 2006-05-16 vRNA HIV-1F HIV-1 DIS RNA kissing-loop + Neamine PubMed | Ennifar, E et al, NAR 34, 2328-2339(2006)
2FCY 46 20 18 2.2 2006-05-16 vRNA HIV-1F HIV-1 DIS RNA kissing-loop + Neomycin PubMed | Ennifar, E et al, NAR 34, 2328-2339(2006)
2FCZ 92 40 36 2.01 2006-05-16 vRNA HIV-1F HIV-1 DIS RNA kissing-loop + Ribostamycin PubMed | Ennifar, E et al, NAR 34, 2328-2339(2006)
2FD0 46 20 18 1.8 2006-05-16 vRNA HIV-1F HIV-1 DIS RNA kissing-loop + Lividomycin PubMed | Ennifar, E et al, NAR 34, 2328-2339(2006)
2QEK 46 21 20 1.8 2008-05-06 vRNA HIV-1F HIV-1 DIS RNA PubMed | Freisz, S et al, Angew Chem Int 47, 4110-4113(2008)
3C3Z 46 20 n/a 1.5 2008-05-06 vRNA HIV-1F HIV-1 DIS RNA + Ribostamycin PubMed | Freisz, S et al, Angew Chem Int 47, 4110-4113(2008)
3C44 46 21 20 2 2008-05-06 vRNA HIV-1F HIV-1 DIS RNA + Paromomycin PubMed | Freisz, S et al, Angew Chem Int 47, 4110-4113(2008)
3C5D 46 21 n/a 1.8 2008-05-06 vRNA HIV-1F HIV-1 DIS RNA + Lividomycin PubMed | Freisz, S et al, Angew Chem Int 47, 4110-4113(2008)
3C7R 46 20 n/a 1.7 2008-05-06 vRNA HIV-1F HIV-1 DIS RNA + Neomycin PubMed | Freisz, S et al, Angew Chem Int 47, 4110-4113(2008)
3DVV 46 20 18 2 2008-08-12 vRNA HIV-1F HIV-1 DIS RNA + Ribostamycin Not in PubMed | Olieric, V et al, to be published
1CSL 28 12 11 1.6 2000-02-14 vRNA Designed HIV-1 mRNA RRE RNA PubMed | Ippolito, JA & Steitz TA, JMB 295, 711-717(2000)
397D 27 11 11 1.3 1998-09-11 vRNA HIV-1 5'-TAR RNA derivative PubMed | Ippolito, JA & Steitz TA, PNAS 95, 9819-9824(1998)
1DUQ 104 45 44 2.1 2000-05-16 vRNA Designed HIV-1 RRE IIb RBE RNA PubMed | Hung, LW et al, PNAS 97, 5107-5112(2000)
1JZV 34 22 15 1.7 2003-11-11 vRNA HIV-1 Psi-RNA SL2 PubMed | Lawrence, DC et al, JMB 326, 529-542(2003)
2W2H 44 11 3 3.25 2008-12-09 vRNA EIAV TAR-RNA + Cyclin T1 + Tat PubMed | Anand, K et al, NSMB 15, 1287-1292(2008)
1XJR 47 23 18 2.7 2005-02-01 vRNA SARS virus S2M RNA PubMed | Robertson, MP et al, PLoS B 3, e5(2005)
1H1K 1906 965 953 10 2002-09-26 vRNA BTV-1 BTV-1 dsRNA PubMed | Diprose, JM et al, J Virol 76, 9533-(2002)
1L2X 27 15 14 1.25 2002-03-22 vRNA BWYV mRNA pseudoknot RNA PubMed | Egli, M et al, PNAS 99, 4302-4307(2002)
1L3D 25 14 14 2.85 2002-03-22 vRNA BWYV mRNA pseudoknot RNA PubMed | Egli, M et al, PNAS 99, 4302-4307(2002)
2A43 26 14 13 1.34 2005-09-27 vRNA PLRV mRNA Pseudoknot RNA PubMed | Pallan, PS et al, Biochem 44, 11315-11322(2005)
1XOK 36 13 13 3 2005-01-04 vRNA AMV 3'-UTR RNA PubMed | Guogas, LM et al, Science 306, 2108-2111(2004)
2QUX 150 54 54 2.44 2007-12-18 vRNA Pseudomonas phage PP7 PP7 RNA TR + P.aeruginosa PP7dFG coat protein PubMed | Chao, JA et al, NSMB 15, 103-105(2008)
2BU1 34 12 12 2.2 2005-08-18 vRNA Enterobacteriophage MS2 MS2 hairpin with AUUA tetraloop PubMed | Grahn, E et al, RNA 7, 1616-1627(2001)
2C4Z 26 10 10 2.6 2006-01-05 vRNA Enterobacteriophage MS2 MS2 RNA TR + E.coli MS2 coat protein PubMed | Grahn, E et al, RNA 7, 1616-1627(2001)
2C4Q 34 12 12 2.38 2005-11-07 vRNA Enterobacteriophage MS2 MS2 hairpin with AUhUA tetraloop PubMed | Grahn, E et al, RNA 7, 1616-1627(2001)
2C4Y 30 10 10 2.68 2006-01-05 vRNA Enterobacteriophage MS2 MS2 hairpin with AUsUA tetraloop PubMed | Grahn, E et al, RNA 7, 1616-1627(2001)
2C50 27 8 8 2.65 2006-01-05 vRNA Enterobacteriophage MS2 MS2 hairpin with AUAA tetraloop PubMed | Grahn, E et al, RNA 7, 1616-1627(2001)
2C51 28 9 9 2.8 2006-01-05 vRNA Enterobacteriophage MS2 MS2 hairpin with AUGA tetraloop PubMed | Grahn, E et al, RNA 7, 1616-1627(2001)
1ZDH 26 8 8 2.7 1997-04-21 vRNA Enterobacteriophage MS2 MS2 hairpin with AUCA tetraloop + E.coli MS2 coat protein PubMed | Valegard, K et al, JMB 270, 724-738(1997)
1ZDI 29 9 9 2.7 1997-04-21 vRNA Enterobacteriophage MS2 MS2 hairpin with AUUA tetraloop PubMed | Valegard, K et al, JMB 270, 724-738(1997)
1ZDJ 16 4 4 2.9 1998-07-08 vRNA Enterobacteriophage MS2 MS2 hairpin with AUCA tetraloop + E.coli MS2 coat protein PubMed | Grahn, E et al, RNA 5, 131-138(1999)
1ZDK 16 15 4 2.86 1998-12-07 vRNA Enterobacteriophage MS2 MS2 hairpin with AUCA tetraloop + E.coli MS2 coat protein PubMed | Grahn, E et al, RNA 5, 131-138(1999)
2IZ8 29 9 9 3.3 2006-07-27 vRNA Enterobacteriophage MS2 MS2 RNA TR variant + E.coli MS2 coat protein PubMed | Helgstrand, C et al, NAR 30, 2678-2685(2002)
2IZM 26 8 8 2.7 2007-07-03 vRNA Enterobacteriophage MS2 MS2 RNA TR variant + E.coli MS2 coat protein PubMed | Helgstrand, C et al, NAR 30, 2678-2685(2002)
2IZN 26 8 8 2.56 2006-07-27 vRNA Enterobacteriophage MS2 MS2 RNA TR variant + E.coli MS2 coat protein PubMed | Helgstrand, C et al, NAR 30, 2678-2685(2002)
2IZ9 28 9 9 2.85 2006-07-27 vRNA Enterobacteriophage MS2 MS2 hairpin PubMed | Grahn, E et al, NAR 28, 4611-4616(2000)
2ANR 25 8 6 1.94 2006-10-24 vRNA? unknown/synthetic RNA hairpin Not in PubMed | Malinina L et al, To be published
1AQ3 28 8 8 2.8 1997-12-24 vRNA Enterobacteriophage MS2 MS2 hairpin with AUUA tetraloop PubMed | van den Worm, SH et al, NAR 26, 1345-1351(1998)
1AQ4 30 9 9 3 1997-12-24 vRNA Enterobacteriophage MS2 MS2 hairpin with AUUA tetraloop PubMed | van den Worm, SH et al, NAR 26, 1345-1351(1998)
1ZSE 12 4 4 3 2006-05-09 vRNA Enterobacteriophage Qbeta Qb and MS2 RNA TR + Qb and MS2 coat protein PubMed | Horn, WT et al, Structure 14, 487-495(2006)
2B2D 12 3 3 2.9 2006-05-09 vRNA Enterobacteriophage Qbeta MS2 hairpin with UAA triloop PubMed | Horn, WT et al, Structure 14, 487-495(2006)
2B2E 30 9 9 3.15 2006-05-09 vRNA Enterobacteriophage MS2 MS2 hairpin with AUUA tetraloop PubMed | Horn, WT et al, Structure 14, 487-495(2006)
2B2G 31 9 9 3.02 2006-05-09 vRNA Enterobacteriophage MS2 MS2 hairpin with AUUA tetraloop (WT) PubMed | Horn, WT et al, Structure 14, 487-495(2006)
2BNY 28 9 9 3 2006-03-22 vRNA Enterobacteriophage MS2 MS2 hairpin with AUUA tetraloop PubMed | Horn, WT et al, Structure 14, 487-495(2006)
2BQ5 36 12 12 2.91 2006-03-22 vRNA Enterobacteriophage MS2 MS2 hairpin with AUUA tetraloop PubMed | Horn, WT et al, Structure 14, 487-495(2006)
2BS0 21 7 6 2.45 2006-03-22 vRNA Enterobacteriophage MS2 MS2 hairpin with AAU triloop PubMed | Horn, WT et al, Structure 14, 487-495(2006)
2BS1 23 8 7 2.8 2006-03-22 vRNA Enterobacteriophage MS2 MS2 hairpin with AAU triloop PubMed | Horn, WT et al, Structure 14, 487-495(2006)
437D 27 15 14 1.6 1998-12-16 vRNA BWYV RNA pseudoknot PubMed | Su, L et al, NSB 6, 285-292(1999)
2R92 19 8 8 3.8 2007-11-27 vRNA Synthetic vRNA + RdRPII PubMed | Lehmann, E et al, Nature 450, 445-449(2007)
2R93 14 6 6 4 2007-11-27 vRNA Synthetic vRNA + RdRPII PubMed | Lehmann, E et al, Nature 450, 445-449(2007)
1A34 20 8 9 1.81 1998-04-29 vRNA STMV RNA fragment PubMed | Larson, SB et al, JMB 277, 37-59(1998)
3CUN 184 72 65 3 2008-06-24 RNA Aptamer In vitro selected Flexizyme ribozyme aptamer PubMed | Xiao, H et al, Nature 454, 358-361(2008)
2OIU 142 72 63 2.6 2007-03-13 RNA Aptamer In vitro selected L1 ligase ribozyme PubMed | Robertson, MP et al, Science 315, 1549-1553(2007)
3EGZ 65 14 19 2.2 2008-10-28 Riboswitch In vitro selected Tetracycline riboswitch PubMed | Xiao, H et al, CB 15, 1125-1137(2008)
1YKV 98 46 41 3.3 2005-02-22 RNA Aptamer In vitro selected Diels-Alder ribozyme PubMed | Serganov, A et al, NSMB 12, 218-224(2005)
1YKQ 98 47 37 3.5 2005-02-22 RNA Aptamer In vitro selected Diels-Alder ribozyme PubMed | Serganov, A et al, NSMB 12, 218-224(2005)
1YLS 98 46 34 3 2005-02-22 RNA Aptamer In vitro selected Diels-Alder ribozyme PubMed | Serganov, A et al, NSMB 12, 218-224(2005)
1ET4 175 93 88 2.3 2000-11-13 RNA Aptamer In vitro selected vitamin B12-binding aptamer cf) 1DDY PubMed | Sussman, D et al, Structure 8, 719-727(2000)
1F1T 38 19 14 2.8 2000-09-04 RNA Aptamer In vitro selected malachite green aptamer PubMed | Baugh, C et al, JMB 301, 117-128(2000)
1OOA 58 24 18 2.45 2003-07-22 RNA Aptamer In vitro selected RNA aptamer complexed with NF-kB(p50)2 PubMed | Huang, DB et al, PNAS 100, 9268-9273(2003)
1NTA 40 19 16 2.9 2003-05-13 RNA Aptamer In vitro selected RNA aptamer + Streptomycin PubMed | Tereshko, V et al, CB 10, 175-187(2003)
1NTB 40 17 15 2.9 2003-05-13 RNA Aptamer In vitro selected RNA aptamer + Streptomycin PubMed | Tereshko, V et al, CB 10, 175-187(2003)
1EC6 40 12 9 2.4 2000-02-21 RNA Aptamer In vitro selected RNA hairpin + human Nova-2 antigen KH domain PubMed | Lewis, HA et al, Cell 100, 323-332(2000)
1F27 30 15 14 1.3 2000-06-12 RNA Aptamer In vitro selected RNA pseudoknot aptamer PubMed | Nix, J et al, JMB 296, 1235-1244(2000)
1U1Y 33 12 11 2.85 2004-12-07 RNA Aptamer In vitro selected F5 RNA aptamer + WT bacteriophage MS2 coat protein PubMed | Horn, WT et al, RNA 10, 1776-1782(2004)
3DD2 25 11 1 1.9 2008-11-11 RNA Aptamer In vitro selected RNA aptamer + human thrombin PubMed | Long, SB et al, RNA 14, 2504-2512(2008)
1NUJ 94 41 37 1.8 2003-08-19 RNA Aptamer In vitro selected leadzyme RNA PubMed | Wedekind, JE et al, Biochem 42, 9554-9563(2003)
1NUV 96 41 37 1.81 2003-08-19 RNA Aptamer In vitro selected Leadzyme RNA + Mg PubMed | Wedekind, JE et al, Biochem 42, 9554-9563(2003)
3FS0 21 8 8 2.3 2009-02-24 RNA Aptamer In vitro selected RNA ligase ribozyme (class II) PubMed | Pitt, JN et al, JACS 131, 3532-3540(2009)
3FTM 46 25 18 2.7 2009-02-24 RNA Aptamer In vitro selected RNA ligase ribozyme (class II) PubMed | Pitt, JN et al, JACS 131, 3532-3540(2009)
1DDY 140 65 49 3 2000-01-01 RNA aptamer In vitro selected Vitamin B12 RNA aptamer PubMed | Sussman, D et al, NSB 7, 53-57(2000)
6MSF 24 8 8 2.8 1998-07-08 RNA Aptamer Synthetic TR F6 RNA aptamer + MS2 coat protein PubMed | Convery, MA et al, NSB 5, 133-139(1998)
2JLT 34 17 16 2.9 2009-08-18 RNA Aptamer Synthetic TAR-06 aptamer PubMed | Lebars, I et al, NAR 36, 7146-7156(2008)
5MSF 34 11 11 2.8 1998-11-11 RNA Aptamer In vitro selected TR F7 RNA aptamer + phage MS2 coat protein PubMed | Rowsell, S et al, NSB 5, 970-975(1998)
7MSF 25 8 8 2.8 1998-11-11 RNA Aptamer In vitro selected TR F7 RNA aptamer + phage MS2 coat protein PubMed | Rowsell, S et al, NSB 5, 970-975(1998)
3CUL 183 76 67 2.8 2008-06-24 RNA Aptamer In vitro selected Flexizyme ribozyme aptamer PubMed | Xiao, H et al, Nature 454, 358-361(2008)
2B63 31 6 6 3.8 2005-12-06 RNA Aptamer In vitro selected FC* RNA + Sc RNAP II PubMed | Kettenberger, H et al, NSMB 13, 44-48(2006)
3AGV 43 19 2 2.15 2010-11-10 RNA aptamer Synthetic RNA aptamer + Hs IgG1 Fc fragment "Nomura, Y et al, NAR 38, 7822-7829(2010)
1MHK 26 11 9 2.5 2002-09-06 rRNA Chromatium minutissimum 5S rRNA loop E PubMed | Szep, S et al, RNA 9, 44-51(2003)
1MJI 68 32 26 2.5 2003-01-21 rRNA Escherichia coli 5S rRNA (Helix III and Loop C) + T.thermophilus L5 PubMed | Perederina, A et al, RNA 8, 1548-1557(2002)
354D 24 11 6 1.5 1997-11-26 rRNA Escherichia coli 5S rRNA loop E PubMed | Correll, CC et al, Cell 91, 705-712(1997)
357D 60 24 22 2.9 1997-12-01 rRNA Escherichia coli 5S rRNA fragment PubMed | Correll, CC et al, Cell 91, 705-712(1997)
364D 60 27 23 3 1998-01-02 rRNA Escherichia coli 5S rRNA Helix I PubMed | Correll, CC et al, Cell 91, 705-712(1997)
1FEU 80 43 28 2.3 2001-06-25 rRNA Escherichia coli 5S rRNA loop E + T.thermophils TL5 PubMed | Fedorov, R et al, Acta Cryst D57, 968-976(2001)
1DFU 38 17 13 1.8 1999-12-02 rRNA Escherichia coli 5S rRNA loop E + L25 PubMed | Lu, M et al, PNAS 97, 2023-2028(2000)
353D 24 12 12 2.4 1997-11-10 rRNA Thermus flavus 5S rRNA domain A PubMed | Betzel, C et al, FEBS Lett 351, 159-164(1994)
361D 49 17 10 3 1998-07-01 rRNA Thermus flavus 5S rRNA loop E with disrupted GNRA PubMed | Perbandt, M et al, FEBS Lett 429, 211-215(1998)
1UN6 122 59 50 3.1 2003-11-20 rRNA Xenopus laevis 5S rRNA H1, H4, H5, loop E PubMed | Lu, D et al, Nature 426, 96-100(2003)
1DQH 19 9 9 1.7 2000-11-13 rRNA Xenopus laevis 5S rRNA H2 PubMed | Xiong, Y et al, RNA 6, 1316-1324(2000)
1DQF 19 9 9 2.2 2000-11-13 rRNA Xenopus laevis 5S rRNA H2 PubMed | Xiong, Y et al, RNA 6, 1316-1324(2000)
2I91 45 16 14 2.65 2006-10-17 rRNA Xenopus laevis pre-5S rRNA misfolded + Rho PubMed | Fuchs, G et al, NSMB 13, 1002-1009(2006)
2G32 32 16 16 1.3 2006-05-30 rRNA Synthetic RNA racemate from Thermus flavus 5S rRNA PubMed | Rypniewski, W et al, Acta Cryst D62, 659-664(2006)
2GPM 32 16 16 1.4 2006-06-27 rRNA Synthetic RNA racemate from Thermus flavus 5S rRNA PubMed | Rypniewski, W et al, Acta Cryst D62, 659-664(2006)
2GQ4 32 16 16 1.35 2006-06-27 rRNA Synthetic RNA racemate from Thermus flavus 5S rRNA PubMed | Rypniewski, W et al, Acta Cryst D62, 659-664(2006)
2GQ5 32 16 16 1.4 2006-06-27 rRNA Synthetic RNA racemate from Thermus flavus 5S rRNA PubMed | Rypniewski, W et al, Acta Cryst D62, 659-664(2006)
2GQ6 32 16 16 1.3 2006-06-27 rRNA Synthetic RNA racemate from Thermus flavus 5S rRNA PubMed | Rypniewski, W et al, Acta Cryst D62, 659-664(2006)
2GQ7 32 16 16 1.6 2006-06-27 rRNA Synthetic RNA racemate from Thermus flavus 5S rRNA PubMed | Rypniewski, W et al, Acta Cryst D62, 659-664(2006)
1QA6 116 64 58 2.8 1999-05-25 rRNA Escherichia coli 23S rRNA + L11 PubMed | Conn, GL et al, Science 284, 1171-1174(1999)
1HC8 116 64 52 2.8 2002-05-23 rRNA Escherichia coli 23S rRNA L11-binding domain PubMed | Conn, GL et al, JMB 318, 963-973(2002)
2BH2 60 15 5 2.15 2005-03-30 rRNA Escherichia coli 23S rRNA fragment (1932-1968) + RumA PubMed | Lee, TT et al, Cell 120, 599-611(2005)
1C04 87 48 38 5 1999-08-31 rRNA Haloarcula marismortui 23S rRNA + L6 + L11 + L14 PubMed | Ban, N et al, Nature 400, 841-847(1999)
1FFZ 499 236 193 3.2 2000-08-28 rRNA Haloarcula marismortui 23S rRNA domain V + Tyr-tRNA acceptor stem PubMed | Nissen, P et al, Science 289, 920-930(2000)
1FG0 499 242 203 3 2000-08-28 rRNA Haloarcula marismortui 23S rRNA domain V + Tyr-tRNA acceptor stem PubMed | Nissen, P et al, Science 289, 920-930(2000)
3BO0 105 35 32 9.6 2008-12-09 rRNA Escherichia coli 23S rRNA + SecY PubMed | Menetret, JF et al, MC 28, 1083-1092(2007)
3BO1 105 35 32 9.6 2008-12-09 rRNA Escherichia coli 23S rRNA + SecY PubMed | Menetret, JF et al, MC 28, 1083-1092(2007)
3DVZ 27 14 10 1 2009-03-24 rRNA Escherichia coli 23S rRNA SRL domain PubMed | Olieric, V et al, RNA 15, 707-715(2009)
3DW4 27 13 9 0.97 2098-03-24 rRNA Escherichia coli 23S rRNA SRL domain with U2650-2'-OMe PubMed | Olieric, V et al, RNA 15, 707-715(2009)
3DW5 27 13 0 0.96 2098-03-24 rRNA Escherichia coli 23S rRNA SRL domain with U2650-2'-OMe PubMed | Olieric, V et al, RNA 15, 707-715(2009)
3DW6 27 13 8 1 2098-03-24 rRNA Escherichia coli 23S rRNA SRL domain with U2650-2'-SeMe PubMed | Olieric, V et al, RNA 15, 707-715(2009)
3DW7 27 13 9 1 2098-03-24 rRNA Escherichia coli 23S rRNA SRL domain with U2650-2'-SeMe PubMed | Olieric, V et al, RNA 15, 707-715(2009)
480D 27 13 10 1.5 1999-10-08 rRNA Escherichia coli 23S rRNA SRL domain PubMed | Correll, CC et al, JMB 292, 275-287(1999)
483D 27 13 10 1.11 1999-10-08 rRNA Escherichia coli 23S rRNA SRL domain PubMed | Correll, CC et al, JMB 292, 275-287(1999)
1Q9A 27 13 10 1.04 2003-11-25 rRNA Escherichia coli 23S rRNA SRL domain PubMed | Correll, CC et al, NAR 31, 6806-6818(2003)
3DH3 88 32 26 3 2009-04-28 rRNA Escherichia coli 23S rRNA fragment + RluF PubMed | Alian, A et al, JMB 388, 785-800(2009)
430D 29 16 10 2.1 1998-10-14 rRNA Rattus rattus 28S rRNA SRL domain PubMed | Correll, CC et al, PNAS 95, 13436-13441(1998)
1MSY 27 14 n/a 1.41 2003-02-25 rRNA Escherichia coli 23S rRNA SRL domain with A2660U PubMed | Correll, CC et al, RNA 9, 355-363(2003)
1JBR 62 29 26 2.15 2001-10-26 rRNA Rattus rattus 28S rRNA SRL domain RNA + Ar restrictus restrictocin PubMed | Yang, X et al, NSB 8, 968-973(2001)
1JBS 58 28 12 1.97 2001-10-26 rRNA Rattus rattus 23S rRNA SRL domain RNA + Ar ribotoxin restrictocin PubMed | Yang, X et al, NSB 8, 968-973(2001)
1JBT 58 26 22 2.7 2001-10-26 rRNA Rattus rattus 23S rRNA SRL domain RNA + Ar ribotoxin restrictocin PubMed | Yang, X et al, NSB 8, 968-973(2001)
1Q93 81 48 37 2.25 2003-11-25 rRNA Rattus rattus 28S rRNA SRL domain PubMed | Correll, CC et al, NAR 31, 6806-6818(2003)
1Q96 81 41 37 1.75 2003-11-25 rRNA Rattus rattus 28S rRNA SRL domain PubMed | Correll, CC et al, NAR 31, 6806-6818(2003)
2X7N 28 13 12 11.8 2010-03-31 rRNA Saccharomyces cerevisiae 28S rRNA SRL + eIF6 PubMed | Gartmann, M et al, JBC 285, 14848-14851(2010)
1Y39 115 68 51 2.8 2005-03-22 rRNA Geobacillus stearothermophilus 23S rRNA L11-binding domain PubMed | Dunstan, MS et al, Chem Biol 12, 201-206(2005)
1MMS 116 68 56 2.57 2000-04-17 rRNA Thermotoga maritima 23S rRNA L11-binding domain + L11 PubMed | Wimberly, BT et al, Cell 97, 491-502(1999)
1MZP 55 29 26 2.65 2003-01-21 rRNA Thermus thermophilus 23S rRNA + Sulfolobus acidocaldarius L1 PubMed | Nikulin, A et al, NSB 10, 104-108(2003)
3FTE 44 19 20 3 2009-03-24 rRNA Escherichia coli 16S rRNA H45 + Aquifex aeolicus VF5 KsgA PubMed | Tu, C et al, Structure 17, 374-385(2009)
3FTF 44 21 21 2.8 2009-03-24 rRNA Escherichia coli 16S rRNA H45 + Aquifex aeolicus VF5 KsgA PubMed | Tu, C et al, Structure 17, 374-385(2009)
1LC4 42 18 16 2.54 2003-04-08 rRNA Escherichia coli 16S rRNA A-site + Tobramycin PubMed | Vicens, Q et al, CB 9, 747-755(2002)
1T0D 66 29 28 2.2 2004-06-15 rRNA Escherichia coli 16S rRNA A-site PubMed | Shandrick, S et al, Angew Chem Int 43, 3177-3182(2004)
1T0E 35 16 15 1.7 2004-06-15 rRNA Escherichia coli 16S rRNA A-site PubMed | Shandrick, S et al, Angew Chem Int 43, 3177-3182(2004)
1MWL 42 17 18 2.4 2003-02-18 rRNA Escherichia coli 16S rRNA A-site PubMed | Vicens, Q et al, JMB 326, 1175-1188(2003)
1ZX7 116 50 49 2.15 2005-09-20 rRNA Escherichia coli 16S rRNA A-site + Neomycin PubMed | Zhao, F et al, Angew Chem Int 44, 5329-5334(2005)
1ZZ5 58 25 23 3 2005-09-20 rRNA Escherichia coli 16S rRNA A-site + Neomycin PubMed | Zhao, F et al, Angew Chem Int 44, 5329-5334(2005)
2A04 58 25 23 2.95 2005-09-20 rRNA Escherichia coli 16S rRNA A-site + Neomycin PubMed | Zhao, F et al, Angew Chem Int 44, 5329-5334(2005)
2FQN 43 19 18 2.3 2006-02-14 rRNA Homo sapiens 16S rRNA A-site PubMed | Kondo, J et al, NAR 34, 676-685(2006)
2G5K 44 18 18 2.8 2006-06-20 rRNA Homo sapiens 16S rRNA A-site + Apramycin PubMed | Kondo, J et al, Angew Chem Int 45, 3310-3314(2006)
2OE5 33 15 14 1.51 2007-02-13 rRNA Homo sapiens 16S rRNA A-site + Apramycin PubMed | Hermann, T et al, BCMD 38, 193-198(2007)
2OE6 33 15 14 2.4 2007-02-13 rRNA Homo sapiens 16S rRNA A-site PubMed | Hermann, T et al, BCMD 38, 193-198(2007)
2OE8 33 15 14 1.8 2007-02-13 rRNA Homo sapiens 16S rRNA A-site + Apramycin PubMed | Hermann, T et al, BCMD 38, 193-198(2007)
2O3V 43 18 17 2.8 2007-11-06 rRNA Homo sapiens 16S rRNA A-site + Paromomycin analog NB33 PubMed | Kondo, J et al, Chembiochem 8, 1700-1709(2007)
2O3W 43 19 18 2.8 2007-11-06 rRNA Homo sapiens 16S rRNA A-site + Paromomycin PubMed | Kondo, J et al, ChemMedChem 8, 1700-1709(2007)
2O3X 42 17 17 2.9 2007-11-06 rRNA Escherichia coli 16S A-site RNA + Paromomycin analog NB30 PubMed | Kondo, J et al, ChemMedChem 8, 1700-1709(2007)
2O3Y 43 19 18 2.8 2007-11-06 rRNA Homo sapiens 16S rRNA A-site + Paromomycin analog NB30 PubMed | Kondo, J et al, ChemMedChem 8, 1700-1709(2007)
3BNL 44 20 20 2.6 2008-06-24 rRNA Homo sapiens Mitochondrial 16S rRNA A-site + Co3+ PubMed | Kondo, J et al, NAR 36, 2654-2666(2008)
3BNN 84 34 28 2 2008-06-24 rRNA Homo sapiens Mitochondrial 16S rRNA A-site PubMed | Kondo, J et al, NAR 36, 2654-2666(2008)
3BNO 84 32 27 2.35 2008-06-24 rRNA Homo sapiens Mitochondrial 16S rRNA A-site (Br-derivative) PubMed | Kondo, J et al, NAR 36, 2654-2666(2008)
3BNP 43 16 16 2.7 2008-06-24 rRNA Homo sapiens mitochondrial 16S rRNA A-site A1555G mutant PubMed | Kondo, J et al, NAR 36, 2654-2666(2008)
3BNQ 90 38 30 2 2008-06-24 rRNA Homo sapiens mitochondrial 16S rRNA A-site A1555G mutant (Br-derivative) PubMed | Kondo, J et al, NAR 36, 2654-2666(2008)
3BNR 89 38 31 2.1 2008-06-24 rRNA Homo sapiens Mitochondrial 16S rRNA A-site A1555G mutant (Br-derivative) + Paromomycin PubMed | Kondo, J et al, NAR 36, 2654-2666(2008)
3BNS 89 38 31 1.9 2008-06-24 rRNA Homo sapiens Mitochondrial 16S rRNA A-site A1555G mutant (Br-derivative) PubMed | Kondo, J et al, NAR 36, 2654-2666(2008)
3BNT 44 20 31 2.3 2008-06-24 rRNA Homo sapiens Mitochondrial 16S rRNA A-site A1555G mutant (Br-derivative) PubMed | Kondo, J et al, NAR 36, 2654-2666(2008)
1I6U 74 40 37 2.6 2001-08-03 rRNA Methanococcus jannaschii 16S rRNA H21 + S8 PubMed | Tishchenko, S et al, JMB 311, 311-324(2001)
1F7Y 57 24 24 2.8 2000-11-22 rRNA Thermus thermophilus 16S rRNA with UUCG PubMed | Ennifar, E et al, JMB 304, 35-42(2000)
1G1X 169 73 61 2.6 2000-10-30 rRNA Thermus thermophilus 30S central domain + S15, S6, S18 PubMed | Agalarov, SC et al, Science 288, 107-113(2000)
1KUQ 57 26 22 2.84 2003-06-24 rRNA Thermus thermophilus 16S rRNA fragment + S15 PubMed | Revtovich, SV et al, Biochem Mosc 69, 1319-1323(2004)
2PWT 42 18 17 1.8 2007-09-18 rRNA Synthetic 16S rRNA A-site + Pamomomycin analogue PubMed | Kondo, J et al, ChemMedChem 2, 1631-1638(2007)
1J7T 42 18 16 2.5 2002-05-18 rRNA Synthetic 16S rRNA A-site + Paromomycin PubMed | Vicens, Q et al, Structure 9, 647-658(2001)
2BE0 42 18 18 2.63 2005-12-20 rRNA Synthetic 16S rRNA A-site + Paromomycin PubMed | Francois, B et al, Angew Chem Int 43, 6735-6738(2004)
2BEE 42 18 18 2.6 2005-12-20 rRNA Synthetic 16S rRNA A-site + Paromomycin PubMed | Francois, B et al, Angew Chem Int 43, 6735-6738(2004)
2ESI 44 18 16 3 2005-12-20 rRNA Synthetic 16S rRNA A-site + Kanamycin PubMed | Francois, B et al, NAR 33, 5677-5690(2005)
2ESJ 42 18 16 2.2 2005-12-20 rRNA Synthetic 16S rRNA A-site+ Lividomycin PubMed | Francois, B et al, NAR 33, 5677-5690(2005)
2ET3 42 18 16 2.8 2005-12-13 rRNA Synthetic 16S rRNA A-site + Gentamycin C1A PubMed | Francois, B et al, NAR 33, 5677-5690(2005)
2ET4 42 16 16 2.4 2005-12-13 rRNA Synthetic 16S rRNA A-site + Neomycin B PubMed | Francois, B et al, NAR 33, 5677-5690(2005)
2ET5 42 18 16 2.2 2005-12-13 rRNA Synthetic 16S rRNA A-site + Ribostamycin PubMed | Francois, B et al, NAR 33, 5677-5690(2005)
2ET8 42 18 17 2.5 2005-12-13 rRNA Synthetic 16S rRNA A-site + Neamine PubMed | Francois, B et al, NAR 33, 5677-5690(2005)
2F4S 42 17 16 2.8 2006-05-02 rRNA Synthetic 16S rRNA A-site + Neamine PubMed | Murray, JP et al, CB 13, 129-138(2006)
2F4T 44 17 17 3 2006-05-02 rRNA Synthetic 16S rRNA A-site + designer antibiotic 1 PubMed | Murray, JP et al, CB 13, 129-138(2006)
2F4U 42 18 17 2.6 2006-05-02 rRNA Synthetic 16S rRNA A-site + designer antibiotic 2 PubMed | Murray, JP et al, CB 13, 129-138(2006)
2G5Q 42 17 16 2.7 2006-10-03 rRNA Synthetic 16S rRNA A-site + Amikacin PubMed | Kondo, J et al, Biochimie 88, 1027-1031(2006)
1YRJ 45 18 18 2.7 2005-06-07 rRNA Synthetic 16S rRNA A-site + Apramycin PubMed | Han, Q et al, Angew Chem Int 44, 2694-2700(2005)
1O9M 42 18 17 2.4 2003-03-27 rRNA Synthetic 16S rRNA A-site + designed antibiotics PubMed | Russell, R et al, JACS 125, 3410-3411(2003)
1YSH 162 79 65 9.5 2005-07-05 rRNA Synthetic rRNA + Ta L30e + Os L37A + Os S13 PubMed | Halic, M et al, NSMB 12, 467-468(2005)
3LOA 44 19 15 2.3 2010-08-04 rRNA Synthetic 16S rRNA H44 PubMed | Dibrov, SM et al, NAR 38, 4458-4465(2010)
3MOJ 69 31 26 2.9 2010-08-04 rRNA Escherichia coli 23S rRNA (2508-2580) with GAAA + Bs DEAD-Box YxiN protein PubMed | Hardin, JW et al, JMB 402, 412-427(2010)
1C2W 2904 951 846 7.5 2000-04-10 rRNA Escherichia coli E23S rRNA fitted to cryo-EM 70S PubMed | Mueller, F et al, JMB 298, 35-59(2000)
1C2X 120 39 35 7.5 2000-04-10 rRNA Escherichia coli E5S rRNA fitted to cryo-EM 70S PubMed | Mueller, F et al, JMB 298, 35-59(2000)
2WW9 140 61 44 8.6 2009-12-08 rRNA Saccharomyces cerevisiae S80S-Sec61 complex PubMed | Becker, T et al, Science 326, 1369-1373(2009)
2WWA 140 55 44 8.9 2009-12-08 rRNA Saccharomyces cerevisiae S80S-Sec61 complex PubMed | Becker, T et al, Science 326, 1369-1373(2009)
2WWB 136 59 47 6.48 2009-12-08 rRNA Saccharomyces cerevisiae S80S-Sec61 complex PubMed | Becker, T et al, Science 326, 1369-1373(2009)
1DK1 57 23 23 2.8 2000-04-02 rRNA Thermus thermophilus 16S rRNA H20-H22 + S15 PubMed | Nikulin, A et al, NSB 7, 273-277(2000)
1GIX 232 103 71 5.5 2001-05-04 rRNA Thermus thermophilus T70S-30S (backbone only) + Sc APE-tRNAs + mRNA PubMed | Yusupov, MM et al, Science 292, 883-896(2001)
1JGO 232 103 71 5.6 2001-07-20 rRNA Thermus thermophilus T70S-30S (backbone only) + Sc APE-tRNAs + mRNA PubMed | Yusupova, GZ et al, Cell 106, 233-241(2001)
1JGP 232 103 71 7 2001-07-20 rRNA Thermus thermophilus T70S-30S (backbone only) + Sc APE-tRNAs + mRNA PubMed | Yusupova, GZ et al, Cell 106, 233-241(2001)
1JGQ 229 100 69 5 2001-07-20 rRNA Thermus thermophilus T70S-30S (backbone only) + Sc APE-tRNAs + mRNA PubMed | Yusupova, GZ et al, Cell 106, 233-241(2001)
2OM7 461 176 151 7.3 2008-01-15 rRNA Thermus thermophilus T70S (h5, h14, h15, h44, H42-44, H68, H76, H89, H95) + EF-G + GMPPNP PubMed | Connell, SR et al, MC 25, 751-764(2007)
3DEG 313 144 113 n/a 2008-08-19 rRNA Escherichia coli E70S h8, h14, H42-44, H95, H71, H92 + AP-tRNAs PubMed | Connell, SR et al, NSMB 15, 910-915(2008)
3DKN 69 34 30 8.7 2008-08-19 rRNA Canis lupus familiaris C80S H6, H7, H50 + Sec61 PubMed | Menetret, JF et al, Structure 16, 1126-1137(2008)
2B3J 50 16 12 2 2006-01-24 tRNA Staphylococcus aureus subsp. aureus Arg2-tRNA ASL + TadA PubMed | Losey, HC et al, NSMB 13, 153-159(2006)
1SZ1 152 70 44 6.21 2004-08-10 tRNA Saccharomyces cerevisiae Phe-tRNA + Af-CCA-adding enzyme PubMed | Xiong, Y & Steitz, TA, Nature 430, 640-645(2004)
1TFW 76 30 29 2.2 2004-08-10 tRNA Saccharomyces cerevisiae Phe-tRNA AS + Af-CCA-adding enzyme PubMed | Xiong, Y & Steitz, TA, Nature 430, 640-645(2004)
1TFY 73 30 30 3.2 2004-08-10 tRNA Saccharomyces cerevisiae Phe-tRNA AS + Af-CCA-adding enzyme PubMed | Xiong, Y & Steitz, TA, Nature 430, 640-645(2004)
2VUQ 14 7 7 1.16 2009-03-10 tRNA Homo sapiens Gly-tRNA AS microhelix PubMed | Eichert, A et al, BBRC 380, 503-507(2009)
2V7R 14 7 7 1.2 2007-08-01 tRNA Homo sapiens Gly-tRNA AS microhelix PubMed | Forster, C et al, BBRC 368, 996-1001(2008)
466D 28 14 14 1.16 1999-08-16 tRNA Escherichia coli Ala-tRNA AS microhelix PubMed | Mueller, U et al, Acta Cryst D55, 1405-1413(1999)
464D 28 14 12 1.23 1999-08-16 tRNA Escherichia coli Ala-tRNA AS microhelix PubMed | Mueller, U et al, Acta Cryst D55, 1405-1413(1999)
2W89 28 16 14 2 2009-11-17 tRNA Escherichia coli Arg-tRNA ASL microhelix PubMed | Eichert, A et al, BBRC 385, 84-87(2009)
3GVN 14 7 7 1.2 2009-07-28 tRNA Escherichia coli Ser-tRNA AS microhelix PubMed | Eichert, A et al, BBRC 386, 368-373(2009)
2V6W 14 7 7 1.8 2007-11-06 tRNA Escherichia coli Ser-tRNA AS microhelix PubMed | Forster, C et al, Acta Cryst D63, 1154-1161(2007)
2VAL 28 15 14 2 2007-10-16 tRNA Escherichia coli Gly-tRNA AS microhelix PubMed | Forster, C et al, BBRC 363, 621-625(2007)
2ZY6 38 13 12 1.75 2009-06-30 tRNA Synthetic truncated tRNA for Thil catalysis TPHE39A PubMed | Tanaka, Y et al, RNA 15, 1498-1506(2009)
2DR5 32 12 10 2.8 2006-10-31 tRNA Synthetic tRNA mini + Af CCA-adding enzyme PubMed | Tomita, K et al, Nature 443, 956-960(2006)
2DR7 33 14 13 2.8 2006-10-31 tRNA Synthetic tRNA mini-DC + Af CCA-adding enzyme PubMed | Tomita, K et al, Nature 443, 956-960(2006)
2DR8 33 14 13 2.5 2006-11-14 tRNA Synthetic tRNA mini-DC + Af CCA-adding enzyme PubMed | Tomita, K et al, Nature 443, 956-960(2006)
2DR9 34 14 13 2.8 2006-10-31 tRNA Synthetic tRNA mini-DCC + Af CCA-adding enzyme PubMed | Tomita, K et al, Nature 443, 956-960(2006)
2DRA 34 14 13 2.5 2006-10-31 tRNA Synthetic tRNA mini-DCC + Af CCA-adding enzyme + ATP PubMed | Tomita, K et al, Nature 443, 956-960(2006)
2DRB 35 14 13 2.8 2006-10-31 tRNA Synthetic tRNA mini-CCA + Af CCA-adding enzyme PubMed | Tomita, K et al, Nature 443, 956-960(2006)
2DVI 35 14 13 2.8 2006-11-14 tRNA Synthetic tRNA mini-DCC + Af CCA-adding enzyme + CTP PubMed | Tomita, K et al, Nature 443, 956-960(2006)
2ZH1 33 14 13 2.8 2008-08-05 tRNA Synthetic tRNA mini-DA + AFCCA PubMed | Toh, Y et al, EMBO J 27, 1944-1952(2008)
2ZH2 34 14 13 2.66 2008-08-05 tRNA Synthetic tRNA mini-DAC + AFCCA PubMed | Toh, Y et al, EMBO J 27, 1944-1952(2008)
2ZH3 34 14 13 2.5 2008-08-05 tRNA Synthetic tRNA mini-DCA + AFCCA PubMed | Toh, Y et al, EMBO J 27, 1944-1952(2008)
2ZH4 34 14 13 2.65 2008-08-05 tRNA Synthetic tRNA mini-DCG + AFCCA PubMed | Toh, Y et al, EMBO J 27, 1944-1952(2008)
2ZH5 34 14 13 2.6 2008-08-05 tRNA Synthetic tRNA mini-DCU + AFCCA PubMed | Toh, Y et al, EMBO J 27, 1944-1952(2008)
2ZH6 34 14 13 2.5 2008-08-05 tRNA Synthetic tRNA mini-DCU + AFCCA + ATP PubMed | Toh, Y et al, EMBO J 27, 1944-1952(2008)
2ZH7 33 14 13 3 2008-08-05 tRNA Synthetic tRNA mini-DG + AFCCA PubMed | Toh, Y et al, EMBO J 27, 1944-1952(2008)
2ZH8 34 14 13 2.65 2008-08-05 tRNA Synthetic tRNA mini-DGC + AFCCA PubMed | Toh, Y et al, EMBO J 27, 1944-1952(2008)
2ZH9 33 14 13 2.9 2008-08-05 tRNA Synthetic tRNA mini-DU + AFCCA PubMed | Toh, Y et al, EMBO J 27, 1944-1952(2008)
2ZHA 33 14 13 2.95 2008-08-05 tRNA Synthetic tRNA mini-DU + AFCCA + CTP PubMed | Toh, Y et al, EMBO J 27, 1944-1952(2008)
2ZHB 34 14 13 3.05 2008-08-05 tRNA Synthetic tRNA mini-DUC + AFCCA PubMed | Toh, Y et al, EMBO J 27, 1944-1952(2008)
434D 28 14 14 1.16 1999-06-14 tRNA Synthetic Ala-tRNA AS PubMed | Mueller, U et al, RNA 5, 670-677(1999)
435D 28 14 14 1.4 1999-06-14 tRNA Synthetic Ala-tRNA AS with U70C PubMed | Mueller, U et al, RNA 5, 670-677(1999)
1LU3 17 5 3 16.8 2002-06-26 tRNA Synthetic Phe-tRNA AL PubMed | Valle, M et al, EMBO J 21, 3557-3567(2002)
1ZL3 22 8 8 2.8 2005-08-09 tRNA Synthetic tRNA T-stem loop substrate RNA + Ec-Y55S PubMed | Hoang, C et al, Protein Sci 14, 2201-2206(2005)
2AB4 20 7 7 2.4 2005-12-13 tRNA Synthetic 5FU-RNA + Tm-Y55S PubMed | Phannachet, K et al, Biochem 44, 15488-15494(2005)
1ZE2 44 17 16 3 2005-04-26 tRNA Synthetic tRNA T-stem loop substrate RNA + Tm-Y55S PubMed | Phannachet, K et al, NAR 32, 1422-1429(2004)
1K8W 22 8 8 1.85 2001-12-31 tRNA Synthetic tRNA T stem-loop (TSL) RNA PubMed | Hoang, C et al, Cell 107, 929-939(2001)
2I82 79 32 28 2.05 2006-11-21 tRNA Synthetic tRNA anticodon-stem loop (ASL) + E.coli RluA PubMed | Hoang, C et al, MC 24, 535-545(2006)
1Q2R 38 13 13 2.9 2003-09-09 tRNA Synthetic tRNA fragment + Zm TGT covalent intermediate PubMed | Xie, W et al, NSB 10, 781-788(2003)
1Q2S 40 13 13 3.2 2003-09-09 tRNA Synthetic tRNA fragment + Zm TGT covalent intermediate PubMed | Xie, W et al, NSB 10, 781-788(2003)
3BT7 38 12 11 2.43 2008-04-29 tRNA Synthetic Phe-tRNA T-arm RNA + Ec TrmA PubMed | Alian, A et al, PNAS 105, 6876-6881(2008)
1R3E 51 20 20 2.1 2003-11-04 tRNA Synthetic Phe-tRNA TSL + Thermotoga maritima TruB PubMed | Pan, H et al, PNAS 100, 12648-12653(2003)
1VFG 65 24 16 2.8 2004-08-10 tRNA Synthetic primer tRNA AS + Aa CCA-adding enzyme Aa.LC PubMed | Tomita, K et al, Nature 430, 700-704(2004)
3OUY 70 26 22 2.69 2010-12-01 tRNA Synthetic tRNA ASL + tRNA-NT PubMed | Pan, B et al, Science 330, 937-940(2010)
3OV7 68 27 24 3 2010-12-01 tRNA Synthetic tRNA ASL + tRNA-NT PubMed | Pan, B et al, Science 330, 937-940(2010)
3OVA 34 14 13 1.98 2010-12-01 tRNA Synthetic tRNA ASL + tRNA-NT PubMed | Pan, B et al, Science 330, 937-940(2010)
3OVB 70 27 25 1.95 2010-12-01 tRNA Synthetic tRNA ASL + tRNA-NT PubMed | Pan, B et al, Science 330, 937-940(2010)
3OVS 68 28 25 2.8 2010-12-01 tRNA Synthetic tRNA ASL + tRNA-NT PubMed | Pan, B et al, Science 330, 937-940(2010)
2NUE 46 22 21 2.9 2007-11-20 dsRNA Synthetic dsRNA processing with Aquifex aeolicus RNase III PubMed | Gan, J et al, MM 67, 143-154(2008)
2NUF 56 28 2.5 2007-11-20 dsRNA Synthetic dsRNA processing with Aquifex aeolicus RNase III PubMed | Gan, J et al, MM 67, 143-154(2008)
2NUG 40 20 20 1.7 2007-11-20 dsRNA Synthetic dsRNA processing with Aquifex aeolicus RNase III PubMed | Gan J et al, MM 67, 143-154(2008)
439D 16 8 8 1.6 2001-09-14 dsRNA Synthetic dsRNA with C:G Wb and D-configuration PubMed | Perbandt, M et al, Acta Cryst D57, 219-224(2001)
3BSN 17 7 6 1.8 2008-01-08 dsRNA Synthetic template-primer dsRNA + NV RdRP PubMed | Zamyakin, DF et al, JBC 283, 7705-7712(2008)
3BSO 16 7 7 1.74 2008-01-08 dsRNA Synthetic template-primer dsRNA + NV RdRP PubMed | Zamyakin, DF et al, JBC 283, 7705-7712(2008)
1N35 13 5 5 2.5 2002-12-25 dsRNA Synthetic template-primer dsRNA + MOV3 lambda3 RdRP PubMed | Tao, Y et al, Cell 111, 733-745(2002)
1N38 7 2 2 2.8 2002-12-25 dsRNA Synthetic template-primer dsRNA + MOV3 lambda3 RdRP PubMed | Tao, Y et al, Cell 111, 733-745(2002)
2EZ6 56 28 26 2.05 2006-02-07 dsRNA Designed dsRNA with GCAA tetraloop + A.aeolicus RNaseIII D44N mutant PubMed | Gan, J et al, Cell 124, 355-366(2006)
2GJW 75 32 30 2.85 2006-09-12 dsRNA Synthetic BHB dsRNA recognized by Af Splicing Endonuclease PubMed | Xue, S et al, Science 312, 906-910(2006)
3KS8 36 18 18 2.4 2010-01-12 dsRNA Synthetic dsRNA + Reston ebolavirus VP35 RNA binding domain PubMed | Kimberlin, CR et al, PNAS 107, 314-319(2009)
420D 32 16 16 1.9 1999-01-13 dsRNA Synthetic dsRNA with G:A mismatches PubMed | Pan, B et al, Biochem 38, 2826-2831(1999)
406D 136 17/16/16/17 15 1.8 1999-02-05 dsRNA Synthetic dsRNA PubMed | Shah, SA et al, JMB 285, 1577-1588(1999)
2AZ0 36 18 12 2.6 2005-10-11 dsRNA Synthetic dsRNA + FHV B2 PubMed | Chao, JA et al, NSMB 12, 952-957(2005)
2AZ2 36 18 12 2.6 2006-10-11 dsRNA Synthetic dsRNA + FHV protein B2 PubMed | Chao, JA et al, NSMB 12, 952-957(2005)
1RNA 28 14 14 2.25 1991-04-15 dsRNA Synthetic dsRNA with consecutive U:A basepairs PubMed | Dock-Bregeon, AC et al, JMB 209, 459-474(1989)
433D 28 14 14 2.1 1998-12-04 dsRNA Synthetic dsRNA with tandem U:G basepairs PubMed | Trikha, J et al, NAR 27, 1728-1739(1999)
1FUF 28 14 12 1.7 2001-11-09 dsRNA Synthetic Chimeric RNA duplex with U(A:U) base triple PubMed | Deng, J et al, RNA 7, 1425-1431(2001)
1IK5 28 15 12 1.8 2001-11-09 dsRNA Synthetic Chimeric RNA duplex with U(A:U) base triple PubMed | Deng, J et al, RNA 7, 1425-1431(2001)
2R1S 26 13 11 1.4 2007-09-25 dsRNA Synthetic dsRNA with bromination PubMed | Timsit, Y & Bombard, S, RNA 13, 2098-2107(2007)
2R20 26 13 11 1.3 2007-09-25 dsRNA Synthetic dsRNA with bromination PubMed | Timsit, Y & Bombard, S, RNA 13, 2098-2107(2007)
2R21 26 13 11 1.59 2007-09-25 dsRNA Synthetic dsRNA with bromination PubMed | Timsit, Y & Bombard, S, RNA 13, 2098-2107(2007)
2R22 26 13 13 1.4 2007-09-25 dsRNA Synthetic dsRNA native PubMed | Timsit, Y & Bombard, S, RNA 13, 2098-2107(2007)
157D 24 12 12 1.8 1994-05-31 dsRNA Synthetic dsRNA with G:A WC basepair PubMed | Leonard, GA et al, Structure 2, 483-494(1994)
1QBP 84 42 29 2.1 1999-11-26 dsRNA Synthetic brominated dsRNA PubMed | Anderson, AC et al, Biochem 38, 12577-12585(1999)
1SDR 48 24 24 2.6 1995-02-27 dsRNA Synthetic dsRNA similar to E. coli SD sequence PubMed | Schindelin, H et al, JMB 249, 595-603(1995)
1YYK 48 24 24 2.5 2005-11-25 dsRNA Synthetic dsRNA + Aquifex aeolicus Rnase III PubMed | Gan, J et al, Structure, 13, 1435-1442(2005)
1YYO 48 24 24 2.9 2005-11-25 dsRNA Synthetic dsRNA + Aquifex aeolicus Rnase III with E110K PubMed | Gan, J et al, Structure, 13, 1435-1442(2005)
1YYW 96 48 48 2.8 2005-11-22 dsRNA Synthetic dsRNA + Aquifex aeolicus RNase III PubMed | Gan, J et al, Structure, 13, 1435-1442(2005)
1YZ9 44 20 20 2.1 2005-11-22 dsRNA Synthetic dsRNA + Aquifex aeolicus Rnase III with E110Q PubMed | Gan, J et al, Structure, 13, 1435-1442(2005)
205D 24 12 12 2.64 1995-09-15 dsRNA Synthetic dsRNA with tandem U:U basepairs PubMed | Baeyens, KJ et al, NSB 2, 56-62(1995)
3CJZ 26 11 10 1.8 2008-10-14 dsRNA Synthetic dsRNA with tandem G:A basepairs PubMed | Pallan, PS et al, RNA 14, 2125-2135(2008)
422D 24 8 8 2.6 2003-06-03 dsRNA Synthetic dsRNA with tandem U:C basepairs PubMed | Eswaramoorthy, S etal, Acta Cryst D60, 8-12(2004)
1KD3 22 10 10 1.8 2003-03-04 dsRNA Synthetic dsRNA with Tl PubMed | Kacer, V etal, Acta Cryst D59, 423-432(2003)
1KD4 22 10 10 1.58 2003-03-04 dsRNA Synthetic dsRNA with Ba PubMed | Kacer, V etal, Acta Cryst D59, 423-432(2003)
1KD5 22 10 10 1.58 2003-03-04 dsRNA Synthetic dsRNA with no metal PubMed | Kacer, V etal, Acta Cryst D59, 423-432(2003)
3EQT 16 8 8 2 2009-03-10 dsRNA Synthetic dsRNA + human LGP2 C-terminal domain PubMed | Li, X et al, JBC 284, 13881-13891(2009)
1J9H 36 19 16 1.4 2001-10-26 dsRNA Synthetic dsRNA with uridine bulge PubMed | Xiong, Y et al, JMB 313, 573-582(2001)
1SA9 48 24 16 2.86 2004-05-18 dsRNA Synthetic dsRNA with tandem G:A basepairs PubMed | Jang, SB et al, Acta Cryst D60, 829-835(2004)
1SAQ 48 17 12 2.7 2004-05-18 dsRNA Synthetic dsRNA with tandem G:A basepairs PubMed | Jang, SB et al, Acta Cryst D60, 829-835(2004)
2G3S 80 42 40 1.5 2007-01-16 dsRNA Synthetic dsRNA with tandem U:G basepairs PubMed | Jang, SB etal, Biophys J 90, 4530-4537(2006)
2G91 17 8 6 1.5 2007-04-03 dsRNA Synthetic dsRNA Not in PubMed | Shi, K et al, To be published
402D 16 8 6 2.3 1998-06-16 dsRNA Synthetic dsRNA with tandem C:A basepairs PubMed | Jang, SB et al, Biochem 37, 11726-11731(1998)
438D 16 8 8 2.5 1999-05-12 dsRNA Synthetic dsRNA with non-tandem U:G basepairs PubMed | Shi, K et al, NAR 27, 2196-2201(1999)
472D 16 8 8 1.9 2000-11-27 dsRNA Synthetic dsRNA with tandem U:G basepairs PubMed | Deng, J et al, NAR 28, 4376-4381(2000)
1L3Z 28 13 1 2.01 2003-02-25 dsRNA Synthetic dsRNA with A overhang PubMed | Shi, K et al, NAR 31, 1392-1397(2003)
2A0P 16 8 6 1.95 2005-08-16 dsRNA Synthetic dsRNA with thioribose PubMed | Haeberli, P et al, NAR 33, 3965-3975(2005)
1YRM 64 32 n/a 2.5 2005-10-18 dsRNA Synthetic dsRNA containing C:A replaced with 2'-NH2-substituted C PubMed | Gherghe, CM et al, JACS 127, 13622-13628(2005)
1YY0 64 32 14 3.2 2005-10-18 dsRNA Synthetic dsRNA containing C:A replaced with 2'-NH2-substituted C PubMed | Gherghe, CM et al, JACS 127, 13622-13628(2005)
1YZD 64 32 14 2.35 2005-10-18 dsRNA Synthetic dsRNA containing C:G replaced with 2'-NH2-substituted C PubMed | Gherghe, CM et al, JACS 127, 13622-13628(2005)
1Z79 64 32 14 2.55 2005-10-18 dsRNA Synthetic dsRNA containing C:A replaced with 2'-NH2-substituted C PubMed | Gherghe, CM et al, JACS 127, 13622-13628(2005)
1Z7F 64 32 16 2.1 2005-10-18 dsRNA Synthetic dsRNA containing C:A replaced with 2'-NH2-substituted C PubMed | Gherghe, CM et al, JACS 127, 13622-13628(2005)
2AO5 40 20 16 2.1 2006-03-28 dsRNA Synthetic dsRNA with tandem U:G basepairs PubMed | Utsunomiya, R et al, Acta Cryst D62, 331-338(2006)
2Q1O 44 20 20 1.1 2007-10-30 dsRNA Synthetic dsRNA with 2,4-dFU:G Wb PubMed | Li, F et al, NAR 35, 6424-6438(2007)
2Q1R 24 12 0 1.12 2007-10-30 dsRNA Synthetic dsRNA with G:A WC PubMed | Li, F et al, NAR 35, 6424-6438(2007)
377D 24 12 8 1.76 1998-08-10 dsRNA Synthetic A-RNA duplex PubMed | Biswas, R et al, Acta Cryst D54, 570-576(1998)
1DI2 40 10 10 1.9 1999-12-02 dsRNA Synthetic dsRNA + Xl-DSRBP A PubMed | Ryter, JM et al, EMBO J 17, 7505-7513(1998)
1G2J 16 6 0 1.97 2000-12-06 dsRNA Synthetic dSRNA with PYY PubMed | Minasov, G et al, RNA 6, 1516-1528(2000)
1KFO 38 18 18 1.6 2001-12-07 dsRNA Synthetic dsRNA with C:A/U:G tandem PubMed | Lima, S et al, RNA 8, 924-932(2002)
1OSU 18 6 0 1.4 1996-04-04 dsRNA Synthetic dsRNA with U:U rH PubMed | Wahl, MC et al, NSB 3, 24-31(1996)
1R3O 32 16 n/a 1.9 2003-12-23 dsRNA Synthetic dsRNA with L-configuration PubMed | Vallazza, M et al, Acta Cryst D60, 1-7(2004)
1RC7 40 20 20 2.15 2004-03-30 dsRNA Synthetic dsRNA + Aa-RNase III dsRBD with E110K PubMed | Blazczyk, J et al, Structure 12, 457-466(2004)
1RXA 16 8 0 2.9 1996-10-20 dsRNA Synthetic dsRNA vs dsDNA PubMed | Portmann, S et al, Biochem 34, 7569-7575(1995)
1RXB 16 8 8 1.8 1996-08-26 dsRNA Synthetic dsRNA vs dsDNA PubMed | Portmann, S et al, Biochem 34, 7569-7575(1995)
255D 24 12 0 2 1995-02-07 dsRNA Synthetic dsRNA with tandem U:C PubMed | Holbrook, SR et al, Nature 353, 579-581(1991)
259D 16 8 8 1.46 1996-08-26 dsRNA Synthetic dsRNA hydration PubMed | Egli, M et al, Biochem 35, 8489-8494(1996)
280D 48 24 24 2.4 1996-09-30 dsRNA Synthetic dsRNA with tandem U:U PubMed | Lietzke, SE et al, Structure 4, 917-930(1996)
283D 24 14 0 2.3 1996-09-30 dsRNA Synthetic dsRNA with G:A and A:A PubMed | Baeyens, KJ et al, PNAS 93, 12851-12855(1996)
2H1M 32 16 12 2.9 2006-07-018 dsRNA Synthetic dsRNA with 2'-SeMe PubMed | Moroder, H et al, JACS 128, 9909-9918(2006)
310D 12 6 n/a 1.3 1997-06-24 dsRNA Synthetic dsRNA with 2'-OMe PubMed | Adamiak, DA et al, NAR 25, 4599-4607(1997)
3CIY 92 46 46 3.41 2008-05-06 dsRNA WNV dsRNA + mouse TLR3 PubMed | Liu, L et al, Science 320, 379-381(2008)
3CZW 28 14 0 1.4 2008-09-09 dsRNA Synthetic dsRNA formed by shorter strans of HH ribozyme PubMed | Rypniewski, W et al, RNA 14, 1845-1851(2008)
3D0M 28 14 0 2 2008-09-09 dsRNA Synthetic dsRNA formed by shorter strans of HH ribozyme PubMed | Rypniewski, W et al, RNA 14, 1845-1851(2008)
405D 32 16 16 2.5 1999-01-13 dsRNA Synthetic dsRNA with C:A Wb PubMed | Pan, B et al, JMB 283, 977-984(1998)
409D 48 20 18 2.5 1999-01-13 dsRNA Synthetic dsRNA with tandem I:U Wb PubMed | Pan, B et al, NAR 26, 5699-5706(1998)
413D 26 12 0 1.8 1998-07-10 dsRNA Synthetic dsRNA with A'-RNA conformation PubMed | Tanaka, Y et al, NAR 27, 949-955(1999)
418D 16 6 n/a 2.4 2003-06-03 dsRNA Synthetic dsRNA with 3'-overhangs Not in PubMed | Mitra, SN et al, JBSD 11, 189-194(2000)
419D 32 13 n/a 2.2 2000-05-29 dsRNA Synthetic dsRNA with 3'-overhangs PubMed | Shi, K et al, JMB 299, 113-122(2000)
468D 24 12 n/a 1.8 1999-05-12 dsRNA Synthetic dsRNA with 2'-MeOEt PubMed | Teplova, M et al, NSB 6, 535-539(1999)
469D 24 12 n/a 1.7 1999-05-12 dsRNA Synthetic dsRNA with 2'-MeOEt PubMed | Teplova, M et al, NSB 6, 535-539(1999)
470D 24 12 n/a 1.95 1999-05-12 dsRNA Synthetic dsRNA with 2'-MeOEt PubMed | Teplova, M et al, NSB 6, 535-539(1999)
471D 24 12 n/a 2.7 1999-05-12 dsRNA Synthetic dsRNA with 2'-MeOEt PubMed | Teplova, M et al, NSB 6, 535-539(1999)
485D 16 8 n/a 0.97 1999-12-18 dsRNA Synthetic dsRNA with sulfate pocket PubMed | Masquida, B et al, RNA 5, 1384-1395(1999)
165D 19 8 8 1.55 1994-08-31 dsRNA Synthetic dsRNA with U:C tandem PubMed | Cruse, WB et al, PNAS 91, 4160-4164(1994)
1UON 13 5 5 7.6 2003-11-13 dsRNA Synthetic dsRNA + Reovirus polymerase lamda PubMed | Zhang, X et al, NSB 10, 1011-(2003)
333D 16 6 0 2.52 1997-10-16 dsRNA Synthetic dsRNA with tandem A:I PubMed | Carter, RJ et al, NAR 25, 4117-4122(1997)
3JXQ 24 12 8 1.45 2010-02-09 dsRNA Synthetic dsRNA with alternating C:G basepairs Not in PubMed | Adamiak, DA et al, New J Chem 34, 903-909(2010)
3JXR 18 6 4 1.25 2010-02-09 dsRNA Synthetic dsRNA with alternating C:G basepairs Not in PubMed | Adamiak, DA et al, New J Chem 34, 903-909(2010)
3L25 16 8 8 2 2010-01-26 dsRNA Synthetic dsRNA + Zaire Ebola VP35 interferon inhibitory domain PubMed | Leung, DW et al, NSMB 17, 165-172(2010)
3L26 16 8 0 2.4 2010-01-26 dsRNA Synthetic dsRNA + Zaire Ebola VP35 interferon inhibitory domain PubMed | Leung, DW et al, NSMB 17, 165-172(2010)
3LRN 28 14 12 2.6 2010-06-02 dsRNA Synthetic dsRNA + human RIG-I CTD PubMed | Lu, C et al, Structure 18, 1032-1043(2010)
3LRR 24 12 9 2.15 2010-06-02 dsRNA Synthetic dsRNA + human RIG-I CTD PubMed | Lu, C et al, Structure 18, 1032-1043(2010)
3NCU 24 12 10 2.55 2010-06-30 dsRNA Synthetic dsRNA + human RIG-I CTD PubMed | Wang, Y et al, NSMB 17, 781-787(2010)
3NJ7 60 25 24 1.9 2010-08-25 dsRNA Synthetic CAG repeat RNA PubMed | Kiliszek, A et al, NAR 38, 8370-8376(2010)
3OG8 28 14 14 2.4 2010-11-03 dsRNA Synthetic dsRNA + human RIG-I CTD PubMed | Lu, C et al, NAR 39, 1565-1575(2011)
3P4A 48 24 0 1.2 2011-01-05 dsRNA Synthtic dsRNA with modified base PubMed | Pallan, PS et al, NAR 39, 3482-3495(2011) 22 (2010)
3P4B 48 24 0 1.45 2011-01-05 dsRNA Synthtic dsRNA with modified base PubMed | Pallan, PS et al, NAR 39, 3482-3495(2011) 22 (2010)
3P4C 16 8 0 1.15 2011-01-05 dsRNA Synthtic dsRNA with modified base PubMed | Pallan, PS et al, NAR 39, 3482-3495(2011) 22 (2010)
3P4D 16 8 0 1.85 2011-01-05 dsRNA Synthtic dsRNA with modified base PubMed | Pallan, PS et al, NAR 39, 3482-3495(2011) 22 (2010)
2E9R 15 6 6 2.81 2007-06-26 Misc RNA FMDV Template-primer RNA + FMDV RdRP + Ribavirin PubMed | Ferrer-Orta, C et al, PNAS 104, 9463-9468(2007)
2E9T 30 14 12 2.6 2007-06-26 Misc RNA FMDV Template-primer RNA + FMDV RdRP + 5F-UTP PubMed | Ferrer-Orta, C et al, PNAS 104, 9463-9468(2007)
2E9Z 16 5 4 3 2007-06-26 Misc RNA FMDV Template-primer RNA + FMDV RdRP + ATP + UTP PubMed | Ferrer-Orta, C et al, PNAS 104, 9463-9468(2007)
2EC0 30 14 14 2.75 2007-06-26 Misc RNA FMDV Template-primer dsRNA + FMDV RdRP + ATP PubMed | Ferrer-Orta, C et al, PNAS 104, 9463-9468(2007)
1WNE 13 4 4 3 2004-08-31 Misc RNA FMDV Template-primer dsRNA + FMDV 3D RdRP PubMed | Ferrer-Orta, C et al, JBC 279, 47212-47221(2004)
1YTY 18 5 4 2.29 2006-01-17 Misc RNA Synthetic RNAP III transcript + human Lupus La protein PubMed | Teplova, M et al, Mol Cell 21, 75-85(2006)
1ZH5 18 5 4 1.85 2006-01-17 Misc RNA Synthetic RNAP III transcript + human Lupus La protein PubMed | Teplova, M et al, Mol Cell 21, 75-85(2006)
1J8G 96 96 4 0.61 2001-11-23 Misc RNA Synthetic RNA tetraplex PubMed | Deng, J et al, PNAS 98, 13665-13670(2001)
2GXB 13 6 6 2.25 2007-05-01 Misc RNA Synthetic Z-RNA PubMed | Placido, D et al, Structure 15, 395-404(2007)
2AWE 47 38 24 2.1 2006-02-07 Misc RNA Synthetic RNA tetraplex i-motif PubMed | Pan, B et al, PNAS 103, 3130-3134(2006)
2GRB 45 34 31 1.4 2006-11-21 Misc RNA Synthetic RNA tetraplex with inosine PubMed | Pan, B et al, JMB 363, 451-459(2006)
387D 26 5 5 3.1 2003-08-26 Misc RNA Synthetic RNA pseudoknot Not in PubMed | Lietzke, SE et al, SMIEBM 2, 91-101(1998) no pdf available
1J6S 92 84 0 1.4 2003-08-05 Misc RNA Synthetic Tetraplex PubMed | Pan, B et al, Structure 11, 815-823(2003)
1MDG 24 20 0 1.5 2003-08-12 Misc RNA Synthetic Tetraplex RNA PubMed | Pan, B et al, Structure 11, 825-831(2003)
1P79 20 8 0 1.1 2003-11-04 Misc RNA Synthetic Tetraplex RNA PubMed | Pan, B et al, Structure 11, 1423-1430(2003)
2ANN 23 6 6 2.3 2006-10-24 Misc RNA Synthetic RNA hairpin + Nova-1 HH1/KH2 domain Not in PubMed | Malinina, L et al, To be published
3G9Y 6 1 1 1.4 2009-03-03 Misc RNA Synthetic ssRNA + Homo sapiens second zinc finger ZRANB2/ZNF265 PubMed | Loughlin, FE et al, PNAS 106, 5581-5586(2009)
1KOG 296 125 132 3.5 2002-04-26 Misc RNA Escherichia coli thrS mRNA operator (5'-UTR leader sequence domain 2) + Ec ThrRS PubMed | Torres-Larios, A et al, NSB 9, 343-347(2002)
2ATW 24 2 0 2.25 2005-10-11 Misc RNA Mycobacterium tuberculosis Leader antitermination sequence of Mtb rrn operon + Mtb NusA PubMed | Beuth, B et al, EMBOJ 24, 3576-3587(2005)
2XD0 216 72 68 3 2011-03-12 Misc RNA Pectobacterium astrosepticum ToxI RNA + toxin ToxN PubMed | Blower, TR et al, NSMB 18, 185-190(2011)
2XDB 36 13 12 2.55 2011-03-12 Misc RNA Pectobacterium astrosepticum ToxI RNA + toxin ToxN PubMed | Blower, TR et al, NSMB 18, 185-190(2011)
2XDD 108 36 35 3.2 2011-01-12 Misc RNA Pectobacterium astrosepticum ToxI RNA + toxin ToxN PubMed | Fineran, PC et al, PNAS 106, 894-899(2009)
3OIJ 28 8 8 3 2010-12-01 Misc RNA Synthetic RNA hairpin + Sc Nep1 PubMed | Thomas, SR et al, NAR 39, 2445-2457 (2011)
3OIN 14 4 4 1.9 2010-12-01 Misc RNA Synthetic RNA hairpin + Sc Nep1 PubMed | Thomas, SR et al, NAR 39, 2445-2457 (2011)